Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Reverse (-)

53327480 .. 53329921

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG302600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCATCCAAGGCGGTGCCGATTTTCGGGAATTGCTTCGGAGATCCTCAGGAGCTTTTGCTTGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCGTCTCACGGCCAAGGCTGTCACCAACCAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGTTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTGCTTTTTCCAATTGGCAATAAGCTCAAGAAGTTTGCGACTTGTAAATATGTTACATATTTGTCAGGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

30.06

Weight (kDa)

10.04

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	2 cut(s)	277, 610
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	3 cut(s)	73, 366, 624
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	634, 686
AfiI	CCNNNNNNNGG	4 cut(s)	26, 277, 300, 610
AflII	CTTAAG	1 cut(s)	463
AgeI	ACCGGT	1 cut(s)	565
AgsI	TTSAA	5 cut(s)	174, 417, 530, 548, 556
AjnI	CCWGG	5 cut(s)	299, 384, 603, 670, 713
AluBI	AGCT	6 cut(s)	55, 459, 544, 616, 660, 754
AluI	AGCT	6 cut(s)	55, 459, 544, 616, 660, 754
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	3 cut(s)	73, 366, 624
ApeKI	GCWGC	2 cut(s)	257, 710
AsiGI	ACCGGT	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	4 cut(s)	165, 388, 506, 677
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	4 cut(s)	165, 388, 506, 677
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	2 cut(s)	75, 626
BanI	GGYRCC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	244
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	244, 697
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	5 cut(s)	301, 386, 605, 672, 715
BcoDI	GTCTC	1 cut(s)	365
BfaI	CTAG	2 cut(s)	84, 98
BfmI	CTRYAG	2 cut(s)	258, 510
BfrI	CTTAAG	1 cut(s)	463
BglI	GCCNNNNNGGC	1 cut(s)	153
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	2 cut(s)	258, 711
BlsI	GCNGC	2 cut(s)	259, 712
Bme1390I	CCNGG	5 cut(s)	301, 386, 605, 672, 715
Bme18I	GGWCC	4 cut(s)	165, 388, 506, 677
BmgT120I	GGNCC	4 cut(s)	165, 388, 506, 677
BmiI	GGNNCC	5 cut(s)	18, 67, 146, 182, 564
BmrFI	CCNGG	5 cut(s)	301, 386, 605, 672, 715
BmsI	GCATC	2 cut(s)	14, 709
BpiI	GAAGAC	1 cut(s)	244
BpmI	CTGGAG	2 cut(s)	163, 587
BpuEI	CTTGAG	2 cut(s)	473, 740
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	5 cut(s)	9, 123, 369, 604, 714
BsaWI	WCCGGW	2 cut(s)	220, 565
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 277, 300, 610
Bse118I	RCCGGY	2 cut(s)	152, 565
Bse1I	ACTGG	2 cut(s)	271, 321
Bse21I	CCTNAGG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	5 cut(s)	301, 386, 605, 672, 715
BseDI	CCNNGG	5 cut(s)	9, 123, 369, 604, 714
BseGI	GGATG	2 cut(s)	5, 724
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	26, 277, 300, 610
BseMII	CTCAG	3 cut(s)	62, 453, 608
BseNI	ACTGG	2 cut(s)	271, 321
BseXI	GCAGC	2 cut(s)	244, 697
BshFI	GGCC	3 cut(s)	75, 368, 626
BshNI	GGYRCC	1 cut(s)	16
BshTI	ACCGGT	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	285
BsiSI	CCGG	3 cut(s)	153, 221, 566
BslI	CCNNNNNNNGG	4 cut(s)	26, 277, 300, 610
BsmAI	GTCTC	1 cut(s)	365
BsmBI	CGTCTC	1 cut(s)	365
BsmI	GAATGC	2 cut(s)	216, 493
BsnI	GGCC	3 cut(s)	75, 368, 626
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	4 cut(s)	43, 94, 397, 538
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	3 cut(s)	75, 368, 626
BspCNI	CTCAG	3 cut(s)	61, 452, 609
BspLI	GGNNCC	5 cut(s)	18, 67, 146, 182, 564
BspMAI	CTGCAG	2 cut(s)	262, 514
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	16
BspTI	CTTAAG	1 cut(s)	463
BsrFI	RCCGGY	2 cut(s)	152, 565
BsrI	ACTGG	2 cut(s)	271, 321
BssAI	RCCGGY	2 cut(s)	152, 565
BssECI	CCNNGG	5 cut(s)	9, 123, 369, 604, 714
BssMI	GATC	4 cut(s)	43, 94, 397, 538
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	3 cut(s)	9, 123, 369
Bst2UI	CCWGG	5 cut(s)	301, 386, 605, 672, 715
Bst4CI	ACNGT	3 cut(s)	80, 91, 243
BstACI	GRCGYC	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	463
BstC8I	GCNNGC	3 cut(s)	154, 262, 285
BstDEI	CTNAG	3 cut(s)	48, 439, 617
BstF5I	GGATG	2 cut(s)	5, 724
BstKTI	GATC	4 cut(s)	46, 97, 400, 541
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	4 cut(s)	43, 94, 397, 538
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 153, 313, 719
BstNI	CCWGG	5 cut(s)	301, 386, 605, 672, 715
BstSCI	CCNGG	5 cut(s)	299, 384, 603, 670, 713
BstSFI	CTRYAG	2 cut(s)	258, 510
BstV1I	GCAGC	2 cut(s)	244, 697
BstV2I	GAAGAC	1 cut(s)	244
BstX2I	RGATCY	2 cut(s)	43, 397
BstYI	RGATCY	2 cut(s)	43, 397
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	75, 368, 626
BtsCI	GGATG	2 cut(s)	5, 724
Cac8I	GCNNGC	3 cut(s)	154, 262, 285
Cfr10I	RCCGGY	2 cut(s)	152, 565
Cfr13I	GGNCC	4 cut(s)	165, 388, 506, 677
CpoI	CGGWCCG	1 cut(s)	165
CseI	GACGC	1 cut(s)	145
CsiI	ACCWGGT	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	633, 685
CspAI	ACCGGT	1 cut(s)	565
CspI	CGGWCCG	1 cut(s)	165
CviAII	CATG	3 cut(s)	610, 707, 801
CviQI	GTAC	2 cut(s)	633, 685
DdeI	CTNAG	3 cut(s)	48, 439, 617
DpnI	GATC	4 cut(s)	45, 96, 399, 540
DpnII	GATC	4 cut(s)	43, 94, 397, 538
EaeI	YGGCCR	3 cut(s)	73, 366, 624
Eco130I	CCWWGG	3 cut(s)	9, 123, 369
Eco47I	GGWCC	4 cut(s)	165, 388, 506, 677
Eco81I	CCTNAGG	1 cut(s)	48
EcoRII	CCWGG	5 cut(s)	299, 384, 603, 670, 713
EcoT14I	CCWWGG	3 cut(s)	9, 123, 369
ErhI	CCWWGG	3 cut(s)	9, 123, 369
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	3 cut(s)	613, 710, 804
FaiI	YATR	9 cut(s)	339, 425, 435, 611, 657, 708, 780, 787, 802
FatI	CATG	3 cut(s)	609, 706, 800
Fnu4HI	GCNGC	2 cut(s)	258, 711
FokI	GGATG	1 cut(s)	731
Fsp4HI	GCNGC	2 cut(s)	258, 711
FspBI	CTAG	2 cut(s)	84, 98
GluI	GCNGC	2 cut(s)	258, 711
GsuI	CTGGAG	2 cut(s)	163, 587
HaeIII	GGCC	3 cut(s)	75, 368, 626
HapII	CCGG	3 cut(s)	153, 221, 566
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	613, 710, 804
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HpaII	CCGG	3 cut(s)	153, 221, 566
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	331, 445
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	6 cut(s)	28, 50, 110, 484, 757, 795
Hpy8I	GTNNAC	2 cut(s)	331, 445
Hpy99I	CGWCG	1 cut(s)	165
HpyAV	CCTTC	2 cut(s)	343, 550
HpyCH4III	ACNGT	3 cut(s)	80, 91, 243
HpyCH4V	TGCA	3 cut(s)	260, 512, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 153, 313, 719
HpyF3I	CTNAG	3 cut(s)	48, 439, 617
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	613, 710, 804
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	43, 94, 397, 538
LmnI	GCTCC	6 cut(s)	52, 144, 180, 579, 613, 797
Lsp1109I	GCAGC	2 cut(s)	244, 697
LweI	GCATC	2 cut(s)	14, 709
MabI	ACCWGGT	1 cut(s)	384
MaeI	CTAG	2 cut(s)	84, 98
MaeIII	GTNAC	2 cut(s)	376, 781
MalI	GATC	4 cut(s)	45, 96, 399, 540
MboI	GATC	4 cut(s)	43, 94, 397, 538
MboII	GAAGA	1 cut(s)	249
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	2 cut(s)	43, 397
MhlI	GDGCHC	1 cut(s)	285
MlsI	TGGCCA	2 cut(s)	75, 626
MluCI	AATT	3 cut(s)	31, 551, 741
MluNI	TGGCCA	2 cut(s)	75, 626
MnlI	CCTC	4 cut(s)	57, 202, 211, 339
Mox20I	TGGCCA	2 cut(s)	75, 626
MroNI	GCCGGC	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	35
MscI	TGGCCA	2 cut(s)	75, 626
MseI	TTAA	3 cut(s)	464, 594, 641
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	2 cut(s)	75, 626
MspCI	CTTAAG	1 cut(s)	463
MspI	CCGG	3 cut(s)	153, 221, 566
MspR9I	CCNGG	5 cut(s)	301, 386, 605, 672, 715
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	216, 493
MvaI	CCWGG	5 cut(s)	301, 386, 605, 672, 715
MwoI	GCNNNNNNNGC	4 cut(s)	11, 153, 313, 719
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	4 cut(s)	43, 94, 397, 538
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	3 cut(s)	613, 710, 804
NlaIV	GGNNCC	5 cut(s)	18, 67, 146, 182, 564
NmuCI	GTSAC	1 cut(s)	376
PctI	GAATGC	2 cut(s)	216, 493
PdiI	GCCGGC	1 cut(s)	154
PdmI	GAANNNNTTC	1 cut(s)	35
PflMI	CCANNNNNTGG	2 cut(s)	277, 610
PinAI	ACCGGT	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	259, 712
PsiI	TTATAA	1 cut(s)	435
Psp6I	CCWGG	5 cut(s)	299, 384, 603, 670, 713
PspGI	CCWGG	5 cut(s)	299, 384, 603, 670, 713
PspN4I	GGNNCC	5 cut(s)	18, 67, 146, 182, 564
PspPI	GGNCC	4 cut(s)	165, 388, 506, 677
PstI	CTGCAG	2 cut(s)	262, 514
PsuI	RGATCY	2 cut(s)	43, 397
RsaI	GTAC	2 cut(s)	634, 686
RsaNI	GTAC	2 cut(s)	633, 685
RseI	CAYNNNNRTG	1 cut(s)	336
Rsr2I	CGGWCCG	1 cut(s)	165
RsrII	CGGWCCG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	464, 594, 641
SatI	GCNGC	2 cut(s)	258, 711
Sau3AI	GATC	4 cut(s)	43, 94, 397, 538
Sau96I	GGNCC	4 cut(s)	165, 388, 506, 677
ScrFI	CCNGG	5 cut(s)	301, 386, 605, 672, 715
SduI	GDGCHC	1 cut(s)	285
SexAI	ACCWGGT	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	14, 709
SfcI	CTRYAG	2 cut(s)	258, 510
SinI	GGWCC	4 cut(s)	165, 388, 506, 677
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	452, 463, 755
SmoI	CTYRAG	3 cut(s)	452, 463, 755
Sse9I	AATT	3 cut(s)	31, 551, 741
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	84, 98
StyD4I	CCNGG	5 cut(s)	299, 384, 603, 670, 713
StyI	CCWWGG	3 cut(s)	9, 123, 369
TaaI	ACNGT	3 cut(s)	80, 91, 243
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	3 cut(s)	31, 551, 741
TatI	WGTACW	1 cut(s)	632
Tru1I	TTAA	3 cut(s)	464, 594, 641
Tru9I	TTAA	3 cut(s)	464, 594, 641
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	257, 710
Tsp45I	GTSAC	1 cut(s)	376
TspGWI	ACGGA	2 cut(s)	149, 157
Van91I	CCANNNNNTGG	2 cut(s)	277, 610
Vha464I	CTTAAG	1 cut(s)	463
VpaK11BI	GGWCC	4 cut(s)	165, 388, 506, 677
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	84, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.