Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Reverse (-)

57078611 .. 57079133

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGTCCAGTACGCCCGGTCTCCCTACGCCGTCGTTTCTGCGCTTTTTCGCCGGAGCGGGAGCTTCGAATCGGCCCTGTAGAGATGGAGAGATCTGGTATAGGTGGCGTTTATTTTCGGGAATTGCTTCGGAGATCCTCAGGAGGTTCGATTTCGTTCTTACGCTTTACGAGAGTTATTCCTGCTTTGTGATATTTGTTGCTTCGGAGATCCTCAGGAGGTTCGATTTCGTTCTTAAGCTTTACGAGAGTTATTCCTGCTTTTTCGTACAGCTTTTGCTTGGTTCCAATGGCAACCATTCCAGGACAGTTGATTTGGGAGATTGTCAAGAAGAACAACTCCTTGGTCAAGCAGTTCGGTTGGAGCCAATCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAAGCTCTACAACCTCCACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.52

Weight (kDa)

8.78

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	2 cut(s)	130, 205
AcyI	GRCGYC	2 cut(s)	5, 376
AfaI	GTAC	2 cut(s)	13, 270
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	4 cut(s)	65, 241, 274, 412
AluI	AGCT	4 cut(s)	65, 241, 274, 412
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	130, 205
AoxI	GGCC	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	2 cut(s)	75, 385
AsuC2I	CCSGG	1 cut(s)	18
AsuII	TTCGAA	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	385
AxyI	CCTNAGG	2 cut(s)	140, 215
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	16
BciT130I	CCWGG	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	79
BfrI	CTTAAG	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	373
BglII	AGATCT	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	18, 304
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	75, 385
BmiI	GGNNCC	3 cut(s)	286, 366, 402
BmrFI	CCNGG	2 cut(s)	18, 304
Bpu14I	TTCGAA	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	2 cut(s)	5, 376
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	343
BsaXI	ACNNNNNCTCC	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	9
Bse21I	CCTNAGG	2 cut(s)	140, 215
BseBI	CCWGG	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	154, 229
BseNI	ACTGG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	18, 54, 373
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	26
Bsp119I	TTCGAA	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	93, 135, 210
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	153, 228
BspLI	GGNNCC	3 cut(s)	286, 366, 402
BspPI	GGATC	2 cut(s)	130, 205
BspT104I	TTCGAA	1 cut(s)	68
BspTI	CTTAAG	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	3 cut(s)	93, 135, 210
BssNI	GRCGYC	2 cut(s)	5, 376
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	310
BstACI	GRCGYC	2 cut(s)	5, 376
BstAFI	CTTAAG	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	140, 215
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	3 cut(s)	96, 138, 213
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	93, 135, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 409
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	16, 302
BstSFI	CTRYAG	1 cut(s)	79
BstX2I	RGATCY	3 cut(s)	93, 135, 210
BstYI	RGATCY	3 cut(s)	93, 135, 210
Bsu36I	CCTNAGG	2 cut(s)	140, 215
BsuRI	GGCC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	75, 385
CpoI	CGGWCCG	1 cut(s)	385
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	2 cut(s)	12, 269
CspI	CGGWCCG	1 cut(s)	385
CviJI	RGCY	7 cut(s)	65, 76, 241, 274, 367, 403, 412
CviKI_1	RGCY	7 cut(s)	65, 76, 241, 274, 367, 403, 412
CviQI	GTAC	2 cut(s)	12, 269
DdeI	CTNAG	2 cut(s)	140, 215
DpnI	GATC	3 cut(s)	95, 137, 212
DpnII	GATC	3 cut(s)	93, 135, 210
Eco130I	CCWWGG	1 cut(s)	343
Eco31I	GGTCTC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	385
Eco81I	CCTNAGG	2 cut(s)	140, 215
EcoRII	CCWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaiI	YATR	1 cut(s)	102
FauI	CCCGC	1 cut(s)	52
GlaI	GCGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	3 cut(s)	18, 54, 373
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	2 cut(s)	5, 376
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	3 cut(s)	18, 54, 373
Hpy188I	TCNGA	2 cut(s)	133, 208
Hpy188III	TCNNGA	4 cut(s)	120, 142, 217, 329
Hpy99I	CGWCG	2 cut(s)	37, 385
HpyCH4III	ACNGT	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 409
HpyF3I	CTNAG	2 cut(s)	140, 215
Hsp92I	GRCGYC	2 cut(s)	5, 376
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	93, 135, 210
LmnI	GCTCC	4 cut(s)	56, 62, 364, 400
MalI	GATC	3 cut(s)	95, 137, 212
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	3 cut(s)	93, 135, 210
MboII	GAAGA	1 cut(s)	344
MflI	RGATCY	3 cut(s)	93, 135, 210
MluCI	AATT	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	5 cut(s)	138, 149, 213, 224, 431
MroXI	GAANNNNTTC	1 cut(s)	127
MseI	TTAA	1 cut(s)	237
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	3 cut(s)	18, 54, 373
MspR9I	CCNGG	2 cut(s)	18, 304
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	2 cut(s)	373, 409
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	93, 135, 210
NlaIV	GGNNCC	3 cut(s)	286, 366, 402
NspV	TTCGAA	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	286, 366, 402
PspPI	GGNCC	2 cut(s)	75, 385
PsuI	RGATCY	3 cut(s)	93, 135, 210
RsaI	GTAC	2 cut(s)	13, 270
RsaNI	GTAC	2 cut(s)	12, 269
Rsr2I	CGGWCCG	1 cut(s)	385
RsrII	CGGWCCG	1 cut(s)	385
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	3 cut(s)	93, 135, 210
Sau96I	GGNCC	2 cut(s)	75, 385
ScrFI	CCNGG	2 cut(s)	18, 304
SetI	ASST	8 cut(s)	67, 107, 149, 224, 243, 276, 414, 423
SfcI	CTRYAG	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	68
SinI	GGWCC	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	16, 302
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	3 cut(s)	68, 150, 225
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TspGWI	ACGGA	2 cut(s)	369, 377
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.