Rh1DG131600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005895
Physical Location & Seq
Reverse (-)
27445240 .. 27448134
2895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG131600.1

Sequence Viewer

Length: 294 bp
ATGCGGAGGCATGCCTTGAATTGTCGCTTGCTGATGAGCACGATGGTTGAGTATGTGTCTCCGGTAGGGGGGCTCCAGCTGATCGAGAATAGGCTTTTGCTTGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACTATTGAGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.86

Weight (kDa)

11.38

Isoelectric Point (pI)

67.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 112
AcyI GRCGYC 1 cut(s) 195
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 2 cut(s) 19, 213
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 63
AoxI GGCC 1 cut(s) 112
AspS9I GGNCC 1 cut(s) 204
AvaII GGWCC 1 cut(s) 204
BalI TGGCCA 1 cut(s) 114
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 41
BccI CCATC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 123, 137
BglI GCCNNNNNGGC 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 4 cut(s) 74, 106, 185, 221
BpiI GAAGAC 1 cut(s) 283
BpmI CTGGAG 2 cut(s) 59, 202
BsaHI GRCGYC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 162
BsaWI WCCGGW 2 cut(s) 61, 259
BsaXI ACNNNNNCTCC 2 cut(s) 229, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 68
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 41
BsiSI CCGG 3 cut(s) 62, 192, 260
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 255
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 41, 75
Bsp143I GATC 2 cut(s) 81, 133
BspACI CCGC 1 cut(s) 4
BspANI GGCC 1 cut(s) 114
BspLI GGNNCC 4 cut(s) 74, 106, 185, 221
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 2 cut(s) 81, 133
BssNI GRCGYC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 119, 130
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 12, 29, 193
BstKTI GATC 2 cut(s) 84, 136
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 2 cut(s) 81, 133
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNSI RCATGY 1 cut(s) 14
BstV2I GAAGAC 1 cut(s) 283
BsuRI GGCC 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 12, 29, 193
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 204
CpoI CGGWCCG 1 cut(s) 204
CseI GACGC 1 cut(s) 184
CspI CGGWCCG 1 cut(s) 204
CviAII CATG 1 cut(s) 11
CviJI RGCY 8 cut(s) 73, 79, 94, 114, 180, 186, 191, 222
CviKI_1 RGCY 8 cut(s) 73, 79, 94, 114, 180, 186, 191, 222
DpnI GATC 2 cut(s) 83, 135
DpnII GATC 2 cut(s) 81, 133
EaeI YGGCCR 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 14
FaiI YATR 2 cut(s) 12, 54
FatI CATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 75
FspBI CTAG 2 cut(s) 123, 137
GsuI CTGGAG 2 cut(s) 59, 202
HaeIII GGCC 1 cut(s) 114
HapII CCGG 3 cut(s) 62, 192, 260
HgaI GACGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 1 cut(s) 14
HpaII CCGG 3 cut(s) 62, 192, 260
Hpy188III TCNNGA 2 cut(s) 85, 149
Hpy99I CGWCG 1 cut(s) 204
HpyCH4III ACNGT 2 cut(s) 119, 130
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 1 cut(s) 14
KroI GCCGGC 1 cut(s) 191
KroNI GCCGGC 1 cut(s) 193
Kzo9I GATC 2 cut(s) 81, 133
LmnI GCTCC 3 cut(s) 78, 183, 219
LpnPI CCDG 5 cut(s) 75, 89, 166, 205, 273
MaeI CTAG 2 cut(s) 123, 137
MalI GATC 2 cut(s) 83, 135
MboI GATC 2 cut(s) 81, 133
MboII GAAGA 1 cut(s) 288
MhlI GDGCHC 2 cut(s) 41, 75
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 1 cut(s) 19
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 2 cut(s) 241, 250
Mox20I TGGCCA 1 cut(s) 114
MroNI GCCGGC 1 cut(s) 191
MscI TGGCCA 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 79
MspI CCGG 3 cut(s) 62, 192, 260
Mva1269I GAATGC 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 192
NaeI GCCGGC 1 cut(s) 193
NdeII GATC 2 cut(s) 81, 133
NgoMIV GCCGGC 1 cut(s) 191
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 4 cut(s) 74, 106, 185, 221
NspI RCATGY 1 cut(s) 14
PaeI GCATGC 1 cut(s) 14
PctI GAATGC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 193
PspN4I GGNNCC 4 cut(s) 74, 106, 185, 221
PspPI GGNCC 1 cut(s) 204
PvuII CAGCTG 1 cut(s) 79
Rsr2I CGGWCCG 1 cut(s) 204
RsrII CGGWCCG 1 cut(s) 204
Sau3AI GATC 2 cut(s) 81, 133
Sau96I GGNCC 1 cut(s) 204
SduI GDGCHC 2 cut(s) 41, 75
SetI ASST 3 cut(s) 81, 233, 242
SinI GGWCC 1 cut(s) 204
SphI GCATGC 1 cut(s) 14
Sse9I AATT 1 cut(s) 19
SsiI CCGC 1 cut(s) 4
SspMI CTAG 2 cut(s) 123, 137
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 2 cut(s) 119, 130
TaqI TCGA 1 cut(s) 84
TaqII GACCGA 1 cut(s) 192
TasI AATT 1 cut(s) 19
TspGWI ACGGA 2 cut(s) 188, 196
VpaK11BI GGWCC 1 cut(s) 204
XceI RCATGY 1 cut(s) 14
XspI CTAG 2 cut(s) 123, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.