Rh6AG173000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005895
Physical Location & Seq
Forward (+)
28043391 .. 28046431
3041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG173000.1

Sequence Viewer

Length: 1026 bp
ATGGAGAGATCTGGTAGAGGCGGTGCCGATTTTCGGGAATTGCTTCGGAGATCCTCAGGAGGTCCGATTTCATTCTTGAGCTTTACGAGACTTTTGCTTGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCATCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTTTGTGGTGCTCGCCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCGTCTCACGGCCAAGGCTGTCACCAACCAGCTTTTTGAAGTTCAACTTGACAACTCTGAAGTCCTTCTACGATTCTCATCTGCTCTTGTTCAAGGTGCTACAAACGTTTTCTGGATTGACATTCAGTCAAATACAAGGCGGTTTGAATCCCTCTTTCTTTATCTTCATGAGGATGTTGCTTTGGAACCCACCCGGTTAAATAAAATTCCTGTACAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTCAAGGCACTTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCTATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGTTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTGCTTTTTCCAATTGGAAATAAGCTCAAGAAGTTTGCGACTTGTAAATATGTTACATATTTGTCAGGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

38.77

Weight (kDa)

10.08

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 657
AccB1I GGYRCC 1 cut(s) 23
AccB7I CCANNNNNTGG 2 cut(s) 313, 832
AciI CCGC 2 cut(s) 21, 532
AclI AACGTT 1 cut(s) 498
AclWI GGATC 1 cut(s) 45
AcoI YGGCCR 3 cut(s) 109, 402, 846
AcsI RAATTY 1 cut(s) 597
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 3 cut(s) 606, 856, 908
AfiI CCNNNNNNNGG 4 cut(s) 33, 313, 336, 832
AgeI ACCGGT 1 cut(s) 787
AgsI TTSAA 9 cut(s) 210, 431, 437, 485, 539, 639, 752, 770, 778
AhdI GACNNNNNGTC 1 cut(s) 517
AjnI CCWGG 4 cut(s) 335, 825, 892, 935
AluBI AGCT 7 cut(s) 81, 424, 681, 766, 838, 882, 976
AluI AGCT 7 cut(s) 81, 424, 681, 766, 838, 882, 976
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 82, 401
AlwI GGATC 1 cut(s) 45
AoxI GGCC 3 cut(s) 109, 402, 846
ApeKI GCWGC 2 cut(s) 293, 932
ApoI RAATTY 1 cut(s) 597
AsiGI ACCGGT 1 cut(s) 787
Asp700I GAANNNNTTC 2 cut(s) 42, 456
AspS9I GGNCC 5 cut(s) 62, 201, 610, 728, 899
AsuC2I CCSGG 1 cut(s) 586
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 5 cut(s) 62, 201, 610, 728, 899
AxyI CCTNAGG 1 cut(s) 55
BalI TGGCCA 2 cut(s) 111, 848
BanI GGYRCC 1 cut(s) 23
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 2 cut(s) 280, 919
BceAI ACGGC 1 cut(s) 417
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 4 cut(s) 337, 827, 894, 937
BcnI CCSGG 1 cut(s) 586
BcoDI GTCTC 2 cut(s) 82, 401
BfaI CTAG 2 cut(s) 120, 134
BfmI CTRYAG 2 cut(s) 294, 732
BglI GCCNNNNNGGC 1 cut(s) 189
BglII AGATCT 2 cut(s) 8, 619
BisI GCNGC 2 cut(s) 294, 933
BlsI GCNGC 2 cut(s) 295, 934
Bme1390I CCNGG 5 cut(s) 337, 586, 827, 894, 937
Bme18I GGWCC 5 cut(s) 62, 201, 610, 728, 899
BmeRI GACNNNNNGTC 1 cut(s) 517
BmgT120I GGNCC 5 cut(s) 62, 201, 610, 728, 899
BmiI GGNNCC 6 cut(s) 25, 103, 182, 218, 579, 786
BmrFI CCNGG 5 cut(s) 337, 586, 827, 894, 937
BmsI GCATC 2 cut(s) 201, 931
BpiI GAAGAC 1 cut(s) 280
BplI GAGNNNNNCTC 2 cut(s) 668, 700
BpmI CTGGAG 2 cut(s) 199, 809
BpuEI CTTGAG 4 cut(s) 97, 670, 695, 962
BpuMI CCSGG 1 cut(s) 586
BsaBI GATNNNNATC 2 cut(s) 469, 624
BsaJI CCNNGG 4 cut(s) 159, 405, 826, 936
BsaWI WCCGGW 2 cut(s) 256, 787
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 313, 336, 832
Bse118I RCCGGY 2 cut(s) 188, 787
Bse1I ACTGG 2 cut(s) 307, 357
Bse21I CCTNAGG 1 cut(s) 55
Bse8I GATNNNNATC 2 cut(s) 469, 624
BseBI CCWGG 4 cut(s) 337, 827, 894, 937
BseDI CCNNGG 4 cut(s) 159, 405, 826, 936
BseGI GGATG 3 cut(s) 192, 571, 946
BseJI GATNNNNATC 2 cut(s) 469, 624
BseLI CCNNNNNNNGG 4 cut(s) 33, 313, 336, 832
BseMII CTCAG 3 cut(s) 69, 675, 830
BseNI ACTGG 2 cut(s) 307, 357
BseXI GCAGC 2 cut(s) 280, 919
BshFI GGCC 3 cut(s) 111, 404, 848
BshNI GGYRCC 1 cut(s) 23
BshTI ACCGGT 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 4 cut(s) 189, 257, 586, 788
BslI CCNNNNNNNGG 4 cut(s) 33, 313, 336, 832
BsmAI GTCTC 2 cut(s) 82, 401
BsmBI CGTCTC 1 cut(s) 401
BsmI GAATGC 2 cut(s) 252, 715
BsnI GGCC 3 cut(s) 111, 404, 848
Bsp1286I GDGCHC 1 cut(s) 321
Bsp1407I TGTACA 1 cut(s) 604
Bsp143I GATC 5 cut(s) 8, 50, 130, 619, 760
BspACI CCGC 2 cut(s) 21, 532
BspANI GGCC 3 cut(s) 111, 404, 848
BspCNI CTCAG 3 cut(s) 68, 674, 831
BspHI TCATGA 1 cut(s) 559
BspLI GGNNCC 6 cut(s) 25, 103, 182, 218, 579, 786
BspMAI CTGCAG 2 cut(s) 298, 736
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 23
BsrFI RCCGGY 2 cut(s) 188, 787
BsrGI TGTACA 1 cut(s) 604
BsrI ACTGG 2 cut(s) 307, 357
BssAI RCCGGY 2 cut(s) 188, 787
BssECI CCNNGG 4 cut(s) 159, 405, 826, 936
BssMI GATC 5 cut(s) 8, 50, 130, 619, 760
BssT1I CCWWGG 2 cut(s) 159, 405
Bst2UI CCWGG 4 cut(s) 337, 827, 894, 937
Bst4CI ACNGT 3 cut(s) 116, 127, 279
BstAUI TGTACA 1 cut(s) 604
BstC8I GCNNGC 3 cut(s) 190, 298, 321
BstDEI CTNAG 3 cut(s) 55, 661, 839
BstF5I GGATG 3 cut(s) 192, 571, 946
BstKTI GATC 5 cut(s) 11, 53, 133, 622, 763
BstMAI GTCTC 2 cut(s) 82, 401
BstMBI GATC 5 cut(s) 8, 50, 130, 619, 760
BstMWI GCNNNNNNNGC 3 cut(s) 189, 349, 941
BstNI CCWGG 4 cut(s) 337, 827, 894, 937
BstSCI CCNGG 5 cut(s) 335, 584, 825, 892, 935
BstSFI CTRYAG 2 cut(s) 294, 732
BstV1I GCAGC 2 cut(s) 280, 919
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 3 cut(s) 8, 50, 619
BstYI RGATCY 3 cut(s) 8, 50, 619
Bsu36I CCTNAGG 1 cut(s) 55
BsuRI GGCC 3 cut(s) 111, 404, 848
BtsCI GGATG 3 cut(s) 192, 571, 946
Cac8I GCNNGC 3 cut(s) 190, 298, 321
CciI TCATGA 1 cut(s) 559
Cfr10I RCCGGY 2 cut(s) 188, 787
Cfr13I GGNCC 5 cut(s) 62, 201, 610, 728, 899
CpoI CGGWCCG 1 cut(s) 201
Csp6I GTAC 3 cut(s) 605, 855, 907
CspAI ACCGGT 1 cut(s) 787
CspI CGGWCCG 1 cut(s) 201
CviAII CATG 4 cut(s) 560, 832, 929, 1023
CviQI GTAC 3 cut(s) 605, 855, 907
DdeI CTNAG 3 cut(s) 55, 661, 839
DpnI GATC 5 cut(s) 10, 52, 132, 621, 762
DpnII GATC 5 cut(s) 8, 50, 130, 619, 760
DriI GACNNNNNGTC 1 cut(s) 517
EaeI YGGCCR 3 cut(s) 109, 402, 846
Eam1105I GACNNNNNGTC 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 159, 405
Eco47I GGWCC 5 cut(s) 62, 201, 610, 728, 899
Eco57I CTGAAG 1 cut(s) 471
Eco81I CCTNAGG 1 cut(s) 55
EcoRII CCWGG 4 cut(s) 335, 825, 892, 935
EcoT14I CCWWGG 2 cut(s) 159, 405
ErhI CCWWGG 2 cut(s) 159, 405
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 4 cut(s) 563, 835, 932, 1026
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 4 cut(s) 559, 831, 928, 1022
Fnu4HI GCNGC 2 cut(s) 294, 933
FokI GGATG 3 cut(s) 179, 578, 953
Fsp4HI GCNGC 2 cut(s) 294, 933
FspBI CTAG 2 cut(s) 120, 134
GluI GCNGC 2 cut(s) 294, 933
GsuI CTGGAG 2 cut(s) 199, 809
HaeIII GGCC 3 cut(s) 111, 404, 848
HapII CCGG 4 cut(s) 189, 257, 586, 788
Hin1II CATG 4 cut(s) 563, 835, 932, 1026
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 2 cut(s) 465, 539
HpaII CCGG 4 cut(s) 189, 257, 586, 788
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 367, 667
Hpy188I TCNGA 3 cut(s) 48, 66, 451
Hpy188III TCNNGA 9 cut(s) 35, 57, 76, 146, 505, 560, 706, 979, 1017
Hpy8I GTNNAC 2 cut(s) 367, 667
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 379, 467, 772
HpyCH4III ACNGT 3 cut(s) 116, 127, 279
HpyCH4IV ACGT 1 cut(s) 498
HpyCH4V TGCA 3 cut(s) 296, 734, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 349, 941
HpyF3I CTNAG 3 cut(s) 55, 661, 839
HpySE526I ACGT 1 cut(s) 498
Hsp92II CATG 4 cut(s) 563, 835, 932, 1026
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 5 cut(s) 8, 50, 130, 619, 760
LmnI GCTCC 4 cut(s) 180, 216, 835, 1019
Lsp1109I GCAGC 2 cut(s) 280, 919
LweI GCATC 2 cut(s) 201, 931
MaeI CTAG 2 cut(s) 120, 134
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 412, 1003
MalI GATC 5 cut(s) 10, 52, 132, 621, 762
MboI GATC 5 cut(s) 8, 50, 130, 619, 760
MboII GAAGA 2 cut(s) 285, 548
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 3 cut(s) 8, 50, 619
MhlI GDGCHC 1 cut(s) 321
MlsI TGGCCA 2 cut(s) 111, 848
MluCI AATT 4 cut(s) 38, 597, 773, 963
MluNI TGGCCA 2 cut(s) 111, 848
MnlI CCTC 8 cut(s) 11, 53, 64, 238, 247, 375, 554, 556
Mox20I TGGCCA 2 cut(s) 111, 848
MroNI GCCGGC 1 cut(s) 188
MroXI GAANNNNTTC 2 cut(s) 42, 456
MscI TGGCCA 2 cut(s) 111, 848
MseI TTAA 3 cut(s) 590, 816, 863
MslI CAYNNNNRTG 2 cut(s) 372, 564
Msp20I TGGCCA 2 cut(s) 111, 848
MspI CCGG 4 cut(s) 189, 257, 586, 788
MspR9I CCNGG 5 cut(s) 337, 586, 827, 894, 937
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 2 cut(s) 252, 715
MvaI CCWGG 4 cut(s) 337, 827, 894, 937
MwoI GCNNNNNNNGC 3 cut(s) 189, 349, 941
NaeI GCCGGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 586
NdeII GATC 5 cut(s) 8, 50, 130, 619, 760
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 4 cut(s) 563, 835, 932, 1026
NlaIV GGNNCC 6 cut(s) 25, 103, 182, 218, 579, 786
NmuCI GTSAC 1 cut(s) 412
PagI TCATGA 1 cut(s) 559
PctI GAATGC 2 cut(s) 252, 715
PdiI GCCGGC 1 cut(s) 190
PdmI GAANNNNTTC 2 cut(s) 42, 456
PfeI GAWTC 2 cut(s) 465, 539
PflMI CCANNNNNTGG 2 cut(s) 313, 832
PinAI ACCGGT 1 cut(s) 787
PkrI GCNGC 2 cut(s) 295, 934
PsiI TTATAA 1 cut(s) 657
Psp1406I AACGTT 1 cut(s) 498
Psp6I CCWGG 4 cut(s) 335, 825, 892, 935
PspGI CCWGG 4 cut(s) 335, 825, 892, 935
PspN4I GGNNCC 6 cut(s) 25, 103, 182, 218, 579, 786
PspPI GGNCC 5 cut(s) 62, 201, 610, 728, 899
PstI CTGCAG 2 cut(s) 298, 736
PsuI RGATCY 3 cut(s) 8, 50, 619
RsaI GTAC 3 cut(s) 606, 856, 908
RsaNI GTAC 3 cut(s) 605, 855, 907
RseI CAYNNNNRTG 2 cut(s) 372, 564
Rsr2I CGGWCCG 1 cut(s) 201
RsrII CGGWCCG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 590, 816, 863
SatI GCNGC 2 cut(s) 294, 933
Sau3AI GATC 5 cut(s) 8, 50, 130, 619, 760
Sau96I GGNCC 5 cut(s) 62, 201, 610, 728, 899
ScrFI CCNGG 5 cut(s) 337, 586, 827, 894, 937
SduI GDGCHC 1 cut(s) 321
SfaNI GCATC 2 cut(s) 201, 931
SfcI CTRYAG 2 cut(s) 294, 732
SinI GGWCC 5 cut(s) 62, 201, 610, 728, 899
SmiMI CAYNNNNRTG 2 cut(s) 372, 564
SmlI CTYRAG 4 cut(s) 76, 674, 685, 977
SmoI CTYRAG 4 cut(s) 76, 674, 685, 977
Sse9I AATT 4 cut(s) 38, 597, 773, 963
SsiI CCGC 2 cut(s) 21, 532
SspMI CTAG 2 cut(s) 120, 134
StyD4I CCNGG 5 cut(s) 335, 584, 825, 892, 935
StyI CCWWGG 2 cut(s) 159, 405
TaaI ACNGT 3 cut(s) 116, 127, 279
TaiI ACGT 1 cut(s) 501
TaqII GACCGA 1 cut(s) 189
TasI AATT 4 cut(s) 38, 597, 773, 963
TatI WGTACW 2 cut(s) 604, 854
TfiI GAWTC 2 cut(s) 465, 539
Tru1I TTAA 3 cut(s) 590, 816, 863
Tru9I TTAA 3 cut(s) 590, 816, 863
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 2 cut(s) 293, 932
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 2 cut(s) 60, 548
TspGWI ACGGA 2 cut(s) 185, 193
Van91I CCANNNNNTGG 2 cut(s) 313, 832
VpaK11BI GGWCC 5 cut(s) 62, 201, 610, 728, 899
XapI RAATTY 1 cut(s) 597
XmnI GAANNNNTTC 2 cut(s) 42, 456
XspI CTAG 2 cut(s) 120, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.