Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

77431885 .. 77485370

Gene Structure 53486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG545400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCAGCCACTTGACCAGAGCACCACGACAAAACCAATGTCTCTCCATACACCACCTCGTGAAAGCCACAAACTTTTGTTTGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCGTCTCACGGCCAAGGCTGTCACCAACCAGTTTTGGCAACTTCAGATGAACATTGCATGTGGGAAGCTCACATTTTTAGATGAAATTATGACCAAACATGGATCTTTCCAACTATTTGATAAGAGATCGCTAGTCTACATATCATACAAAGGTGTGCAGAGGACACCATCAGAAGAAGATAAAATTCCGCTCAAGATTGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

193

Amino Acids

21.87

Weight (kDa)

10.35

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	510
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	1 cut(s)	484
AcoI	YGGCCR	2 cut(s)	91, 384
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	174
AdeI	CACNNNGTG	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	295, 318
AgsI	TTSAA	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	442
AluI	AGCT	1 cut(s)	442
Alw21I	GWGCWC	2 cut(s)	23, 303
Alw26I	GTCTC	2 cut(s)	45, 383
AlwI	GGATC	1 cut(s)	484
AoxI	GGCC	2 cut(s)	91, 384
ApeKI	GCWGC	2 cut(s)	4, 275
ApoI	RAATTY	1 cut(s)	558
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	93
BauI	CACGAG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	2 cut(s)	23, 303
BbvI	GCAGC	2 cut(s)	16, 262
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	399
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	45, 383
BfaI	CTAG	3 cut(s)	102, 116, 506
BfmI	CTRYAG	1 cut(s)	276
BglI	GCCNNNNNGGC	1 cut(s)	171
BisI	GCNGC	2 cut(s)	5, 276
BlsI	GCNGC	2 cut(s)	6, 277
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	85, 164, 200
BmrFI	CCNGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	262
BpmI	CTGGAG	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	141, 387
BsaWI	WCCGGW	1 cut(s)	238
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 318
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	289, 339, 403
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	141, 387
BseLI	CCNNNNNNNGG	2 cut(s)	295, 318
BseMI	GCAATG	1 cut(s)	426
BseNI	ACTGG	3 cut(s)	289, 339, 403
BseXI	GCAGC	2 cut(s)	16, 262
BsgI	GTGCAG	1 cut(s)	551
BshFI	GGCC	2 cut(s)	93, 386
BsiHKAI	GWGCWC	2 cut(s)	23, 303
BsiSI	CCGG	2 cut(s)	171, 239
BslI	CCNNNNNNNGG	2 cut(s)	295, 318
BsmAI	GTCTC	2 cut(s)	45, 383
BsmBI	CGTCTC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	2 cut(s)	93, 386
Bsp1286I	GDGCHC	2 cut(s)	23, 303
Bsp143I	GATC	3 cut(s)	112, 476, 500
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	2 cut(s)	93, 386
BspLI	GGNNCC	3 cut(s)	85, 164, 200
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	565
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	289, 339, 403
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	141, 387
BssMI	GATC	3 cut(s)	112, 476, 500
BssNI	GRCGYC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	141, 387
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	3 cut(s)	98, 109, 261
BstACI	GRCGYC	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	172, 280, 303
BstKTI	GATC	3 cut(s)	115, 479, 503
BstMAI	GTCTC	2 cut(s)	45, 383
BstMBI	GATC	3 cut(s)	112, 476, 500
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 331
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	16, 262
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	93, 386
Cac8I	GCNNGC	3 cut(s)	172, 280, 303
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	183
CpoI	CGGWCCG	1 cut(s)	183
CseI	GACGC	1 cut(s)	163
CspI	CGGWCCG	1 cut(s)	183
CviAII	CATG	2 cut(s)	432, 473
DpnI	GATC	3 cut(s)	114, 478, 502
DpnII	GATC	3 cut(s)	112, 476, 500
DraIII	CACNNNGTG	1 cut(s)	59
EaeI	YGGCCR	2 cut(s)	91, 384
Eco130I	CCWWGG	2 cut(s)	141, 387
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	2 cut(s)	141, 387
ErhI	CCWWGG	2 cut(s)	141, 387
Esp3I	CGTCTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	435, 476
FaiI	YATR	7 cut(s)	48, 357, 433, 464, 474, 515, 520
FatI	CATG	2 cut(s)	431, 472
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	2 cut(s)	5, 276
Fsp4HI	GCNGC	2 cut(s)	5, 276
FspBI	CTAG	3 cut(s)	102, 116, 506
GluI	GCNGC	2 cut(s)	5, 276
GsuI	CTGGAG	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	93, 386
HapII	CCGG	2 cut(s)	171, 239
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	435, 476
HpaII	CCGG	2 cut(s)	171, 239
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	2 cut(s)	349, 511
Hpy188I	TCNGA	2 cut(s)	420, 547
Hpy188III	TCNNGA	3 cut(s)	59, 128, 568
Hpy8I	GTNNAC	2 cut(s)	349, 511
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	3 cut(s)	98, 109, 261
HpyCH4V	TGCA	4 cut(s)	4, 278, 431, 532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 331
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	435, 476
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	3 cut(s)	112, 476, 500
LmnI	GCTCC	2 cut(s)	162, 198
Lsp1109I	GCAGC	2 cut(s)	16, 262
MaeI	CTAG	3 cut(s)	102, 116, 506
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	3 cut(s)	114, 478, 502
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	3 cut(s)	112, 476, 500
MboII	GAAGA	3 cut(s)	267, 560, 563
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	23, 303
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	2 cut(s)	459, 558
MluNI	TGGCCA	1 cut(s)	93
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	5 cut(s)	66, 220, 229, 357, 528
Mox20I	TGGCCA	1 cut(s)	93
MroNI	GCCGGC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	93
MspI	CCGG	2 cut(s)	171, 239
MspR9I	CCNGG	1 cut(s)	319
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	171, 331
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	3 cut(s)	112, 476, 500
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	2 cut(s)	435, 476
NlaIV	GGNNCC	3 cut(s)	85, 164, 200
NmuCI	GTSAC	1 cut(s)	394
NspI	RCATGY	1 cut(s)	435
PctI	GAATGC	1 cut(s)	234
PdiI	GCCGGC	1 cut(s)	172
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	6, 277
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	3 cut(s)	85, 164, 200
PspPI	GGNCC	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	280
PsuI	RGATCY	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	354
Rsr2I	CGGWCCG	1 cut(s)	183
RsrII	CGGWCCG	1 cut(s)	183
SatI	GCNGC	2 cut(s)	5, 276
Sau3AI	GATC	3 cut(s)	112, 476, 500
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	23, 303
SetI	ASST	5 cut(s)	58, 212, 221, 444, 529
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	2 cut(s)	459, 558
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	3 cut(s)	102, 116, 506
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	2 cut(s)	141, 387
TaaI	ACNGT	3 cut(s)	98, 109, 261
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	459, 558
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	4, 275
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	437, 471
TspGWI	ACGGA	2 cut(s)	167, 175
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	3 cut(s)	102, 116, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.