Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

9427151 .. 9429350

Gene Structure 2200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGAGATCTAGTAGAGGCGGTGCCGATTTTCAGGAATTGCTTCGGAGATCCTCAGGAGGTCCGATTTCATTCTTGAGCTTTACAAGACTTTTGCTCGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCCTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGCTGCAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCGTCTCACGGCCAAGGCTGTCACCAACCAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAAGGTTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTGCTTTTTCCAGTGAGTAGATCTGATCCCATCACAGTTATTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.15

Weight (kDa)

10.24

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	2 cut(s)	280, 613
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	45, 752
AcoI	YGGCCR	3 cut(s)	109, 369, 627
AfaI	GTAC	2 cut(s)	637, 689
AfiI	CCNNNNNNNGG	4 cut(s)	263, 280, 303, 613
AflII	CTTAAG	1 cut(s)	466
AgeI	ACCGGT	1 cut(s)	568
AgsI	TTSAA	5 cut(s)	210, 420, 533, 551, 559
AjnI	CCWGG	5 cut(s)	302, 387, 606, 673, 716
AluBI	AGCT	5 cut(s)	81, 462, 547, 619, 663
AluI	AGCT	5 cut(s)	81, 462, 547, 619, 663
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	2 cut(s)	45, 752
AoxI	GGCC	4 cut(s)	109, 190, 369, 627
ApeKI	GCWGC	2 cut(s)	260, 713
AsiGI	ACCGGT	1 cut(s)	568
Asp700I	GAANNNNTTC	1 cut(s)	42
AspS9I	GGNCC	5 cut(s)	62, 201, 391, 509, 680
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	5 cut(s)	62, 201, 391, 509, 680
AxyI	CCTNAGG	1 cut(s)	55
BalI	TGGCCA	2 cut(s)	111, 629
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	247, 700
BccI	CCATC	1 cut(s)	770
BceAI	ACGGC	1 cut(s)	384
BciT130I	CCWGG	5 cut(s)	304, 389, 608, 675, 718
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	3 cut(s)	12, 120, 134
BfmI	CTRYAG	2 cut(s)	261, 513
BfrI	CTTAAG	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	189
BglII	AGATCT	3 cut(s)	8, 400, 752
BisI	GCNGC	2 cut(s)	261, 714
BlsI	GCNGC	2 cut(s)	262, 715
Bme1390I	CCNGG	5 cut(s)	304, 389, 608, 675, 718
Bme18I	GGWCC	5 cut(s)	62, 201, 391, 509, 680
BmgT120I	GGNCC	5 cut(s)	62, 201, 391, 509, 680
BmiI	GGNNCC	5 cut(s)	25, 103, 182, 218, 567
BmrFI	CCNGG	5 cut(s)	304, 389, 608, 675, 718
BmsI	GCATC	1 cut(s)	712
BpmI	CTGGAG	2 cut(s)	199, 590
BpuEI	CTTGAG	2 cut(s)	97, 476
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	4 cut(s)	159, 372, 607, 717
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 280, 303, 613
Bse118I	RCCGGY	2 cut(s)	188, 568
Bse1I	ACTGG	3 cut(s)	274, 324, 743
Bse21I	CCTNAGG	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	5 cut(s)	304, 389, 608, 675, 718
BseDI	CCNNGG	4 cut(s)	159, 372, 607, 717
BseGI	GGATG	1 cut(s)	727
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	4 cut(s)	263, 280, 303, 613
BseMII	CTCAG	3 cut(s)	69, 456, 611
BseNI	ACTGG	3 cut(s)	274, 324, 743
BseXI	GCAGC	2 cut(s)	247, 700
BshFI	GGCC	4 cut(s)	111, 192, 371, 629
BshNI	GGYRCC	1 cut(s)	23
BshTI	ACCGGT	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	189, 257, 569
BslI	CCNNNNNNNGG	4 cut(s)	263, 280, 303, 613
BsmAI	GTCTC	1 cut(s)	368
BsmBI	CGTCTC	1 cut(s)	368
BsmI	GAATGC	2 cut(s)	252, 496
BsnI	GGCC	4 cut(s)	111, 192, 371, 629
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	4 cut(s)	111, 192, 371, 629
BspCNI	CTCAG	3 cut(s)	68, 455, 612
BspLI	GGNNCC	5 cut(s)	25, 103, 182, 218, 567
BspMAI	CTGCAG	2 cut(s)	265, 517
BspPI	GGATC	2 cut(s)	45, 752
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	466
BsrFI	RCCGGY	2 cut(s)	188, 568
BsrI	ACTGG	3 cut(s)	274, 324, 743
BssAI	RCCGGY	2 cut(s)	188, 568
BssECI	CCNNGG	4 cut(s)	159, 372, 607, 717
BssMI	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
BssT1I	CCWWGG	2 cut(s)	159, 372
Bst2UI	CCWGG	5 cut(s)	304, 389, 608, 675, 718
Bst4CI	ACNGT	3 cut(s)	116, 127, 769
BstAFI	CTTAAG	1 cut(s)	466
BstC8I	GCNNGC	3 cut(s)	190, 265, 288
BstDEI	CTNAG	3 cut(s)	55, 442, 620
BstF5I	GGATG	1 cut(s)	727
BstKTI	GATC	7 cut(s)	11, 53, 133, 403, 544, 755, 760
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 316, 722
BstNI	CCWGG	5 cut(s)	304, 389, 608, 675, 718
BstSCI	CCNGG	5 cut(s)	302, 387, 606, 673, 716
BstSFI	CTRYAG	2 cut(s)	261, 513
BstV1I	GCAGC	2 cut(s)	247, 700
BstX2I	RGATCY	4 cut(s)	8, 50, 400, 752
BstYI	RGATCY	4 cut(s)	8, 50, 400, 752
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	4 cut(s)	111, 192, 371, 629
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	1 cut(s)	750
Cac8I	GCNNGC	3 cut(s)	190, 265, 288
Cfr10I	RCCGGY	2 cut(s)	188, 568
Cfr13I	GGNCC	5 cut(s)	62, 201, 391, 509, 680
CpoI	CGGWCCG	1 cut(s)	201
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	636, 688
CspAI	ACCGGT	1 cut(s)	568
CspI	CGGWCCG	1 cut(s)	201
CviAII	CATG	2 cut(s)	613, 710
CviQI	GTAC	2 cut(s)	636, 688
DdeI	CTNAG	3 cut(s)	55, 442, 620
DpnI	GATC	7 cut(s)	10, 52, 132, 402, 543, 754, 759
DpnII	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
EaeI	YGGCCR	3 cut(s)	109, 369, 627
Eco130I	CCWWGG	2 cut(s)	159, 372
Eco47I	GGWCC	5 cut(s)	62, 201, 391, 509, 680
Eco81I	CCTNAGG	1 cut(s)	55
EcoRII	CCWGG	5 cut(s)	302, 387, 606, 673, 716
EcoT14I	CCWWGG	2 cut(s)	159, 372
ErhI	CCWWGG	2 cut(s)	159, 372
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	2 cut(s)	616, 713
FaiI	YATR	6 cut(s)	342, 428, 438, 614, 660, 711
FatI	CATG	2 cut(s)	612, 709
Fnu4HI	GCNGC	2 cut(s)	261, 714
FokI	GGATG	1 cut(s)	734
Fsp4HI	GCNGC	2 cut(s)	261, 714
FspBI	CTAG	3 cut(s)	12, 120, 134
GluI	GCNGC	2 cut(s)	261, 714
GsuI	CTGGAG	2 cut(s)	199, 590
HaeIII	GGCC	4 cut(s)	111, 192, 371, 629
HapII	CCGG	3 cut(s)	189, 257, 569
Hin1II	CATG	2 cut(s)	616, 713
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HpaII	CCGG	3 cut(s)	189, 257, 569
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	334, 448
Hpy188I	TCNGA	3 cut(s)	48, 66, 757
Hpy188III	TCNNGA	5 cut(s)	35, 57, 76, 146, 487
Hpy8I	GTNNAC	2 cut(s)	334, 448
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	2 cut(s)	346, 553
HpyCH4III	ACNGT	3 cut(s)	116, 127, 769
HpyCH4V	TGCA	3 cut(s)	263, 515, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 316, 722
HpyF3I	CTNAG	3 cut(s)	55, 442, 620
Hsp92II	CATG	2 cut(s)	616, 713
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
LmnI	GCTCC	4 cut(s)	180, 216, 582, 616
Lsp1109I	GCAGC	2 cut(s)	247, 700
LweI	GCATC	1 cut(s)	712
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	3 cut(s)	12, 120, 134
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	7 cut(s)	10, 52, 132, 402, 543, 754, 759
MboI	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
MflI	RGATCY	4 cut(s)	8, 50, 400, 752
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	2 cut(s)	111, 629
MluCI	AATT	2 cut(s)	38, 554
MluNI	TGGCCA	2 cut(s)	111, 629
MnlI	CCTC	7 cut(s)	11, 53, 64, 203, 238, 247, 342
Mox20I	TGGCCA	2 cut(s)	111, 629
MroNI	GCCGGC	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	2 cut(s)	111, 629
MseI	TTAA	4 cut(s)	467, 597, 644, 778
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	2 cut(s)	111, 629
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	3 cut(s)	189, 257, 569
MspR9I	CCNGG	5 cut(s)	304, 389, 608, 675, 718
Mva1269I	GAATGC	2 cut(s)	252, 496
MvaI	CCWGG	5 cut(s)	304, 389, 608, 675, 718
MwoI	GCNNNNNNNGC	3 cut(s)	189, 316, 722
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
NgoMIV	GCCGGC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	616, 713
NlaIV	GGNNCC	5 cut(s)	25, 103, 182, 218, 567
NmuCI	GTSAC	1 cut(s)	379
PctI	GAATGC	2 cut(s)	252, 496
PdiI	GCCGGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	42
PflMI	CCANNNNNTGG	2 cut(s)	280, 613
PinAI	ACCGGT	1 cut(s)	568
PkrI	GCNGC	2 cut(s)	262, 715
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	5 cut(s)	302, 387, 606, 673, 716
PspGI	CCWGG	5 cut(s)	302, 387, 606, 673, 716
PspN4I	GGNNCC	5 cut(s)	25, 103, 182, 218, 567
PspPI	GGNCC	5 cut(s)	62, 201, 391, 509, 680
PstI	CTGCAG	2 cut(s)	265, 517
PsuI	RGATCY	4 cut(s)	8, 50, 400, 752
RsaI	GTAC	2 cut(s)	637, 689
RsaNI	GTAC	2 cut(s)	636, 688
RseI	CAYNNNNRTG	1 cut(s)	339
Rsr2I	CGGWCCG	1 cut(s)	201
RsrII	CGGWCCG	1 cut(s)	201
SaqAI	TTAA	4 cut(s)	467, 597, 644, 778
SatI	GCNGC	2 cut(s)	261, 714
Sau3AI	GATC	7 cut(s)	8, 50, 130, 400, 541, 752, 757
Sau96I	GGNCC	5 cut(s)	62, 201, 391, 509, 680
ScrFI	CCNGG	5 cut(s)	304, 389, 608, 675, 718
SduI	GDGCHC	1 cut(s)	288
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	2 cut(s)	261, 513
SinI	GGWCC	5 cut(s)	62, 201, 391, 509, 680
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	3 cut(s)	76, 455, 466
SmoI	CTYRAG	3 cut(s)	76, 455, 466
Sse9I	AATT	2 cut(s)	38, 554
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	3 cut(s)	12, 120, 134
StyD4I	CCNGG	5 cut(s)	302, 387, 606, 673, 716
StyI	CCWWGG	2 cut(s)	159, 372
TaaI	ACNGT	3 cut(s)	116, 127, 769
TaqII	GACCGA	1 cut(s)	189
TasI	AATT	2 cut(s)	38, 554
TatI	WGTACW	1 cut(s)	635
Tru1I	TTAA	4 cut(s)	467, 597, 644, 778
Tru9I	TTAA	4 cut(s)	467, 597, 644, 778
TscAI	CASTG	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	260, 713
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	1 cut(s)	60
TspGWI	ACGGA	2 cut(s)	185, 193
TspRI	CASTG	1 cut(s)	750
Van91I	CCANNNNNTGG	2 cut(s)	280, 613
Vha464I	CTTAAG	1 cut(s)	466
VpaK11BI	GGWCC	5 cut(s)	62, 201, 391, 509, 680
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	3 cut(s)	12, 120, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.