Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

41751740 .. 41754225

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGAGATCTGGTAGAGGCGGTGCCAATTTTCGGGAATTGCTTCAGAGATCCTCAGGAGTTGATCTGGGAGATTGTCAAGAAGAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGTCGGCATCTGTTGGTCCATTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCAGTCTGGTTTGGCAAAGAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACTATTCTGTGGTGCTCACCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTCCACAAGTCTGTGATGAGGAAGGATTTTCGTGTCACGGCCACGGCTGTCACCAACCAGGTACCGAATACTCCATTCACTGTTCTGTGGAATGAAATGAATGATAATAACAATGATGTATGTGATGCGTTTAGTTTTCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

147

Amino Acids

16.51

Weight (kDa)

10.01

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	358
AccB1I	GGYRCC	2 cut(s)	23, 358
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	336
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	33, 270
AgsI	TTSAA	1 cut(s)	144
AjnI	CCWGG	2 cut(s)	269, 354
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	136, 298
AsuHPI	GGTGA	2 cut(s)	247, 340
AvaII	GGWCC	2 cut(s)	136, 298
AxyI	CCTNAGG	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	23, 358
BbsI	GAAGAC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	214
BceAI	ACGGC	2 cut(s)	351, 357
BciT130I	CCWGG	2 cut(s)	271, 356
BfmI	CTRYAG	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	124
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	271, 356
Bme18I	GGWCC	2 cut(s)	136, 298
BmgT120I	GGNCC	2 cut(s)	136, 298
BmiI	GGNNCC	4 cut(s)	25, 117, 152, 360
BmrFI	CCNGG	2 cut(s)	271, 356
BmsI	GCATC	2 cut(s)	136, 412
BpiI	GAAGAC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	134
BsaJI	CCNNGG	2 cut(s)	94, 339
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 270
Bse1I	ACTGG	1 cut(s)	291
Bse21I	CCTNAGG	1 cut(s)	55
BseBI	CCWGG	2 cut(s)	271, 356
BseDI	CCNNGG	2 cut(s)	94, 339
BseLI	CCNNNNNNNGG	2 cut(s)	33, 270
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	338
BshNI	GGYRCC	2 cut(s)	23, 358
BsiHKAI	GWGCWC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	33, 270
BsnI	GGCC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp143I	GATC	3 cut(s)	8, 50, 64
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	68
BspLI	GGNNCC	4 cut(s)	25, 117, 152, 360
BspMAI	CTGCAG	1 cut(s)	232
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	2 cut(s)	23, 358
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	2 cut(s)	94, 339
BssMI	GATC	3 cut(s)	8, 50, 64
BssT1I	CCWWGG	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	271, 356
Bst4CI	ACNGT	2 cut(s)	213, 379
BstC8I	GCNNGC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	339
BstKTI	GATC	3 cut(s)	11, 53, 67
BstMBI	GATC	3 cut(s)	8, 50, 64
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 283
BstNI	CCWGG	2 cut(s)	271, 356
BstSCI	CCNGG	2 cut(s)	269, 354
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	214
BstX2I	RGATCY	2 cut(s)	8, 50
BstYI	RGATCY	2 cut(s)	8, 50
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	136, 298
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	359
CviJI	RGCY	7 cut(s)	112, 118, 153, 227, 286, 338, 344
CviKI_1	RGCY	7 cut(s)	112, 118, 153, 227, 286, 338, 344
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	3 cut(s)	10, 52, 66
DpnII	GATC	3 cut(s)	8, 50, 64
EaeI	YGGCCR	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	136, 298
Eco57I	CTGAAG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	269, 354
EcoT14I	CCWWGG	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	94
FaiI	YATR	1 cut(s)	418
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	338
HphI	GGTGA	2 cut(s)	247, 340
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	3 cut(s)	35, 57, 80
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	2 cut(s)	213, 379
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 283
HpyF3I	CTNAG	1 cut(s)	55
KpnI	GGTACC	1 cut(s)	362
Kzo9I	GATC	3 cut(s)	8, 50, 64
LmnI	GCTCC	2 cut(s)	115, 150
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	136, 412
MabI	ACCWGGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	331, 346
MalI	GATC	3 cut(s)	10, 52, 66
MboI	GATC	3 cut(s)	8, 50, 64
MboII	GAAGA	3 cut(s)	95, 216, 219
MflI	RGATCY	2 cut(s)	8, 50
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	28, 38
MnlI	CCTC	5 cut(s)	11, 64, 172, 181, 309
MroXI	GAANNNNTTC	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	271, 356
MvaI	CCWGG	2 cut(s)	271, 356
MwoI	GCNNNNNNNGC	2 cut(s)	124, 283
NdeII	GATC	3 cut(s)	8, 50, 64
NlaIV	GGNNCC	4 cut(s)	25, 117, 152, 360
NmuCI	GTSAC	2 cut(s)	331, 346
PdmI	GAANNNNTTC	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	269, 354
PspGI	CCWGG	2 cut(s)	269, 354
PspN4I	GGNNCC	4 cut(s)	25, 117, 152, 360
PspPI	GGNCC	2 cut(s)	136, 298
PstI	CTGCAG	1 cut(s)	232
PsuI	RGATCY	2 cut(s)	8, 50
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	8, 50, 64
Sau96I	GGNCC	2 cut(s)	136, 298
ScrFI	CCNGG	2 cut(s)	271, 356
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	3 cut(s)	164, 173, 360
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	2 cut(s)	136, 412
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	136, 298
Sse9I	AATT	2 cut(s)	28, 38
SsiI	CCGC	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	269, 354
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	2 cut(s)	213, 379
TasI	AATT	2 cut(s)	28, 38
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	331, 346
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	2 cut(s)	331, 346
TspDTI	ATGAA	2 cut(s)	405, 410
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	2 cut(s)	136, 298
XmnI	GAANNNNTTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.