Rorug02G0445200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005895
Physical Location & Seq
Forward (+)
57138514 .. 57140630
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0445200.1

Sequence Viewer

Length: 618 bp
ATGGAGGTCTGTGCTACTAATGCTCAAAACCGAGATCAACAGGAAAGTACCCATCGGGGTGGTGTAATGCCATTTATTCAGCATGCTTTGCAAGCAGCAAAGGAAGGTGGTAAGCCTATATCATTTATAGACAATTATGAAAACATGTATCAGGATGCAGAGCATAAGTGGGTTAGTGAGGCTAAACGAGTGAGACATGAGAAAATGAAGCAGAAGAGGGAAGATGTCAAGGCAAAGCTCATTGAAGAGGCACCAGAAGGTACTCCTATTGAATCAATAGAAGTGGCTTTGAATGACGAGATTGCAATTATGGTTGAGGAGTGTGGGAGAAAAGGTGGCAAGGTTCAAGGTTTAGGTGTTTTCCCTCGCTTGGATATCTCGTCTTCTTCTTCTTCTTCAATGCCAATAAATTCTGAGTGGAATGAGATGCAAGGTAATCTACAAAAGCTTACATCCACTGTAAGTTGCTTGGAATCTGAGAATGCAAAGTTGAAATCTATGTTGCGAGCAATATTTAGCAAATTGAATGGGAGTGATGACATTAATTGTGATGTTGATGATAGCTCTGCTCAAGAAACTGATGGTATTGAAGGAACTGATGACTTCTCTAATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.7

Weight (kDa)

4.75

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 2 - 122 6.6e-07 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 409
AfaI GTAC 2 cut(s) 49, 262
AfiI CCNNNNNNNGG 1 cut(s) 370
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 8 cut(s) 245, 272, 292, 347, 399, 493, 526, 590
AluBI AGCT 3 cut(s) 238, 448, 564
AluI AGCT 3 cut(s) 238, 448, 564
Alw26I GTCTC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 409
AseI ATTAAT 1 cut(s) 543
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 60, 575
BcoDI GTCTC 1 cut(s) 187
BfaI CTAG 1 cut(s) 616
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 252
BmsI GCATC 2 cut(s) 145, 417
BpiI GAAGAC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 555
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 160, 452
BseLI CCNNNNNNNGG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 405, 468
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 487
Bsp143I GATC 1 cut(s) 34
BspCNI CTCAG 2 cut(s) 406, 469
BspLI GGNNCC 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 250
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 460
Bst6I CTCTTC 2 cut(s) 209, 240
BstAPI GCANNNNNTGC 1 cut(s) 88
BstC8I GCNNGC 3 cut(s) 84, 93, 507
BstDEI CTNAG 2 cut(s) 414, 477
BstF5I GGATG 2 cut(s) 160, 452
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 187
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 20, 88, 92
BstNSI RCATGY 2 cut(s) 86, 148
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 375
BstXI CCANNNNNNTGG 1 cut(s) 59
BtsCI GGATG 2 cut(s) 160, 452
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 3 cut(s) 84, 93, 507
Csp6I GTAC 2 cut(s) 48, 261
CspCI CAANNNNNGTGG 2 cut(s) 264, 299
CviAII CATG 3 cut(s) 83, 145, 197
CviJI RGCY 6 cut(s) 115, 182, 238, 287, 448, 564
CviKI_1 RGCY 6 cut(s) 115, 182, 238, 287, 448, 564
CviQI GTAC 2 cut(s) 48, 261
DdeI CTNAG 2 cut(s) 414, 477
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 209, 240
EarI CTCTTC 2 cut(s) 209, 240
Eco32I GATATC 1 cut(s) 376
EcoRV GATATC 1 cut(s) 376
FaeI CATG 3 cut(s) 86, 148, 200
FaiI YATR 9 cut(s) 84, 119, 128, 138, 146, 165, 198, 311, 500
FatI CATG 3 cut(s) 82, 144, 196
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 167, 439
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 616
GluI GCNGC 1 cut(s) 96
Hin1II CATG 3 cut(s) 86, 148, 200
HindIII AAGCTT 1 cut(s) 446
HinfI GANTC 2 cut(s) 272, 473
Hpy188I TCNGA 2 cut(s) 415, 478
Hpy188III TCNNGA 2 cut(s) 152, 572
HpyAV CCTTC 3 cut(s) 98, 251, 584
HpyCH4III ACNGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 91, 158, 305, 430, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 88, 92
HpyF3I CTNAG 2 cut(s) 414, 477
Hsp92II CATG 3 cut(s) 86, 148, 200
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 26, 137, 267
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 2 cut(s) 145, 417
MaeI CTAG 1 cut(s) 616
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 8 cut(s) 226, 233, 257, 375, 378, 381, 384, 387
MluCI AATT 5 cut(s) 133, 306, 409, 521, 544
MnlI CCTC 5 cut(s) 172, 210, 241, 310, 375
MseI TTAA 1 cut(s) 543
MslI CAYNNNNRTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 487
MwoI GCNNNNNNNGC 3 cut(s) 20, 88, 92
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 86, 148, 200
NlaIV GGNNCC 1 cut(s) 252
NspI RCATGY 2 cut(s) 86, 148
PaeI GCATGC 1 cut(s) 86
PciI ACATGT 1 cut(s) 144
PctI GAATGC 1 cut(s) 487
PfeI GAWTC 2 cut(s) 272, 473
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 252
RsaI GTAC 2 cut(s) 49, 262
RsaNI GTAC 2 cut(s) 48, 261
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 34
SfaNI GCATC 2 cut(s) 145, 417
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 570
SmoI CTYRAG 1 cut(s) 570
SphI GCATGC 1 cut(s) 86
Sse9I AATT 5 cut(s) 133, 306, 409, 521, 544
SspI AATATT 1 cut(s) 513
SspMI CTAG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 460
TasI AATT 5 cut(s) 133, 306, 409, 521, 544
TfiI GAWTC 2 cut(s) 272, 473
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 463
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 153, 221
TspRI CASTG 1 cut(s) 463
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 1 cut(s) 409
XceI RCATGY 2 cut(s) 86, 148
XspI CTAG 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.