Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Reverse (-)

69189101 .. 69189885

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G039170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCACCGTTCTAGGACAGTTGATCTGGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCAGCTGGAGCCAAGCCGGTGTCCGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCGTCTCACGGCCAAGGCTGTCACCAACCAGGTTTTCAATGCAATTTATTTGTTACGCTTGGCTTCTGAGCAGACATTTAGGTATAATGATTATGATGCAAGGGATGATATAATTAAGGGAAGCGTTAGGGAATTTGGAATTGGAAAAAAAAATCATATCTTGTTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

131

Amino Acids

14.84

Weight (kDa)

10.36

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	145
AcoI	YGGCCR	2 cut(s)	3, 234
AcsI	RAATTY	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	145, 168
AgsI	TTSAA	1 cut(s)	262
AjnI	CCWGG	2 cut(s)	167, 252
AjuI	GAANNNNNNNTTGG	4 cut(s)	242, 274, 348, 380
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	2 cut(s)	3, 234
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	112
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	169, 254
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	126, 392
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	169, 254
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	169, 254
BmsI	GCATC	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	53, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 168
Bse118I	RCCGGY	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	139, 189
BseBI	CCWGG	2 cut(s)	169, 254
BseDI	CCNNGG	2 cut(s)	53, 237
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	145, 168
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	139, 189
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	2 cut(s)	5, 236
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	145, 168
BsmAI	GTCTC	1 cut(s)	233
BsmBI	CGTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	5, 236
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	5, 236
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	82
BsrI	ACTGG	2 cut(s)	139, 189
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	53, 237
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	53, 237
Bst2UI	CCWGG	2 cut(s)	169, 254
Bst4CI	ACNGT	3 cut(s)	10, 21, 111
BstC8I	GCNNGC	2 cut(s)	130, 153
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	2 cut(s)	169, 254
BstSCI	CCNGG	2 cut(s)	167, 252
BstSFI	CTRYAG	2 cut(s)	126, 392
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	5, 236
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	130, 153
Cfr10I	RCCGGY	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	252
CviJI	RGCY	9 cut(s)	5, 71, 77, 82, 125, 184, 236, 242, 287
CviKI_1	RGCY	9 cut(s)	5, 71, 77, 82, 125, 184, 236, 242, 287
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	2 cut(s)	3, 234
Eco130I	CCWWGG	2 cut(s)	53, 237
EcoRII	CCWGG	2 cut(s)	167, 252
EcoT14I	CCWWGG	2 cut(s)	53, 237
ErhI	CCWWGG	2 cut(s)	53, 237
Esp3I	CGTCTC	1 cut(s)	233
FaiI	YATR	6 cut(s)	207, 309, 318, 335, 381, 394
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	5, 236
HapII	CCGG	1 cut(s)	83
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	3 cut(s)	10, 21, 111
HpyCH4V	TGCA	3 cut(s)	128, 266, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	310
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	244, 276
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	153
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	267, 336, 356, 363
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	207
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	339
MslI	CAYNNNNRTG	1 cut(s)	204
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	169, 254
MvaI	CCWGG	2 cut(s)	169, 254
MwoI	GCNNNNNNNGC	1 cut(s)	181
NdeII	GATC	1 cut(s)	24
NlaIV	GGNNCC	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	167, 252
PspGI	CCWGG	2 cut(s)	167, 252
PspN4I	GGNNCC	1 cut(s)	76
PstI	CTGCAG	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	24
ScrFI	CCNGG	2 cut(s)	169, 254
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	3 cut(s)	73, 258, 308
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	2 cut(s)	126, 392
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	267, 336, 356, 363
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	167, 252
StyI	CCWWGG	2 cut(s)	53, 237
TaaI	ACNGT	3 cut(s)	10, 21, 111
TasI	AATT	4 cut(s)	267, 336, 356, 363
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	244
TspGWI	ACGGA	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	145
XapI	RAATTY	1 cut(s)	356
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.