Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020840.1

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2913

Gene Structure 2913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020840.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

agatggagagatctggtagaggcggtgccgattttcgggaattgcttcagagatcctcaggagcttttgcttggttccaatggccaccgttctaggatagttgatctaggagattgtcaagaaaacaactccttggtcaagcagttcggctggagccaagccgccgtccgtcggtccgtttcaacaaggagcctaacaacctctacaacctccactcctaaaagcattccggtttggcaaacaagaagactgttgagtattcaggctgcaggcaaagaccagtctgtggtgctcgccaccaccaagaccaagaagcagaacaagccaaccagtttggttcacaagtatgtgatgaggaaggattttcgtctcacggccaaggctgtcaccaaccaggtaccgaatactccattcactattctgtggaatgaaatgaatgataataacaatgatgtatgtgatgcgattagttttctaatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

160

Amino Acids

18.07

Weight (kDa)

9.95

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	397
AccB1I	GGYRCC	2 cut(s)	25, 397
AccB7I	CCANNNNNTGG	1 cut(s)	286
AciI	CCGC	2 cut(s)	23, 162
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	82, 375
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	3 cut(s)	35, 171, 286
AgsI	TTSAA	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	82, 375
ApeKI	GCWGC	1 cut(s)	266
Asp700I	GAANNNNTTC	1 cut(s)	44
Asp718I	GGTACC	1 cut(s)	397
AspS9I	GGNCC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	84
BanI	GGYRCC	2 cut(s)	25, 397
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	253
BceAI	ACGGC	2 cut(s)	149, 390
BciT130I	CCWGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	374
BfaI	CTAG	2 cut(s)	93, 107
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	10
BisI	GCNGC	2 cut(s)	162, 267
BlsI	GCNGC	2 cut(s)	163, 268
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	5 cut(s)	27, 76, 155, 191, 399
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	132, 378
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 171, 286
Bse1I	ACTGG	2 cut(s)	280, 330
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	132, 378
BseLI	CCNNNNNNNGG	3 cut(s)	35, 171, 286
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	2 cut(s)	280, 330
BseXI	GCAGC	1 cut(s)	253
BshFI	GGCC	2 cut(s)	84, 377
BshNI	GGYRCC	2 cut(s)	25, 397
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	35, 171, 286
BsmAI	GTCTC	1 cut(s)	374
BsmBI	CGTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	84, 377
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	10, 52, 103
BspACI	CCGC	2 cut(s)	23, 162
BspANI	GGCC	2 cut(s)	84, 377
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	5 cut(s)	27, 76, 155, 191, 399
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	2 cut(s)	25, 397
BsrI	ACTGG	2 cut(s)	280, 330
BssECI	CCNNGG	2 cut(s)	132, 378
BssMI	GATC	3 cut(s)	10, 52, 103
BssT1I	CCWWGG	2 cut(s)	132, 378
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	2 cut(s)	89, 252
BstC8I	GCNNGC	2 cut(s)	271, 294
BstDEI	CTNAG	1 cut(s)	57
BstKTI	GATC	3 cut(s)	13, 55, 106
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	10, 52, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	395
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	10, 52
BstYI	RGATCY	2 cut(s)	10, 52
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	84, 377
Cac8I	GCNNGC	2 cut(s)	271, 294
Cfr13I	GGNCC	1 cut(s)	174
CpoI	CGGWCCG	1 cut(s)	174
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	398
CspI	CGGWCCG	1 cut(s)	174
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	3 cut(s)	12, 54, 105
DpnII	GATC	3 cut(s)	10, 52, 103
EaeI	YGGCCR	2 cut(s)	82, 375
Eco130I	CCWWGG	2 cut(s)	132, 378
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	31
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	132, 378
ErhI	CCWWGG	2 cut(s)	132, 378
Esp3I	CGTCTC	1 cut(s)	374
FaiI	YATR	2 cut(s)	348, 457
Fnu4HI	GCNGC	2 cut(s)	162, 267
Fsp4HI	GCNGC	2 cut(s)	162, 267
FspBI	CTAG	2 cut(s)	93, 107
GluI	GCNGC	2 cut(s)	162, 267
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	84, 377
HapII	CCGG	1 cut(s)	230
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	3 cut(s)	37, 59, 119
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	352
HpyCH4III	ACNGT	2 cut(s)	89, 252
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	57
KpnI	GGTACC	1 cut(s)	401
Kzo9I	GATC	3 cut(s)	10, 52, 103
LmnI	GCTCC	3 cut(s)	61, 153, 189
LpnPI	CCDG	9 cut(s)	44, 136, 243, 248, 255, 293, 343, 380, 407
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	451
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	2 cut(s)	93, 107
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	3 cut(s)	12, 54, 105
MboI	GATC	3 cut(s)	10, 52, 103
MboII	GAAGA	1 cut(s)	258
MflI	RGATCY	2 cut(s)	10, 52
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	1 cut(s)	40
MluNI	TGGCCA	1 cut(s)	84
MnlI	CCTC	5 cut(s)	13, 66, 211, 220, 348
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	345
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	3 cut(s)	10, 52, 103
NlaIV	GGNNCC	5 cut(s)	27, 76, 155, 191, 399
NmuCI	GTSAC	1 cut(s)	385
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	163, 268
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	5 cut(s)	27, 76, 155, 191, 399
PspPI	GGNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	10, 52
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	345
Rsr2I	CGGWCCG	1 cut(s)	174
RsrII	CGGWCCG	1 cut(s)	174
SatI	GCNGC	2 cut(s)	162, 267
Sau3AI	GATC	3 cut(s)	10, 52, 103
Sau96I	GGNCC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	4 cut(s)	66, 203, 212, 399
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	40
SsiI	CCGC	2 cut(s)	23, 162
SspMI	CTAG	2 cut(s)	93, 107
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	132, 378
TaaI	ACNGT	2 cut(s)	89, 252
TaqII	GACCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	40
TauI	GCSGC	1 cut(s)	164
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	444, 449
TspGWI	ACGGA	2 cut(s)	158, 166
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	93, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.