Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

64414402 .. 64433217

Gene Structure 18816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG479300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTATCCTTTCTCCCGGGTAATCACTCTCCCTCTCAGCAGGTCTGATCATTGTCCACTACTTATCGAGGTTAATCCAGAGTTACCTACACTACGTCGATCCCCCAGACAGTTTCGGTTTGAAGAAATGTGGCTGCACCATTCTGGTTGTGGTAATATTGTGCAACAAGGCTGGATGCTGCCATCTACTGGTGATTCGATGCTACAGAGATGGAGAGATCTGGTAGAGGCGGTGCCGATTTTCGGGAATTGCTTCGGAGATCCTCAGGAGCTTTTGCTTGGTTCCATTAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACTATTGAGTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

157

Amino Acids

17.85

Weight (kDa)

9.24

Isoelectric Point (pI)

76.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	232
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	1 cut(s)	230
AclWI	GGATC	2 cut(s)	93, 254
AcoI	YGGCCR	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	188, 242
AgsI	TTSAA	2 cut(s)	122, 393
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
AlwI	GGATC	2 cut(s)	93, 254
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	133, 178
AseI	ATTAAT	1 cut(s)	288
Asp700I	GAANNNNTTC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	2 cut(s)	16, 17
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	120, 165
BccI	CCATC	2 cut(s)	190, 204
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	46
BcnI	CCSGG	2 cut(s)	16, 17
BfaI	CTAG	2 cut(s)	303, 317
BfmI	CTRYAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	372
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	134, 179
BlsI	GCNGC	2 cut(s)	135, 180
Bme1390I	CCNGG	2 cut(s)	16, 17
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	4 cut(s)	234, 283, 365, 401
BmrFI	CCNGG	2 cut(s)	16, 17
BmsI	GCATC	2 cut(s)	165, 189
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	382
BpuMI	CCSGG	2 cut(s)	16, 17
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	15, 342
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	409, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 242
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	193
Bse21I	CCTNAGG	1 cut(s)	264
BseDI	CCNNGG	2 cut(s)	15, 342
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	188, 242
BseMII	CTCAG	2 cut(s)	49, 278
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	120, 165
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	1 cut(s)	232
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	3 cut(s)	16, 372, 440
BslI	CCNNNNNNNGG	2 cut(s)	188, 242
BsmI	GAATGC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	15
Bsp143I	GATC	5 cut(s)	46, 98, 217, 259, 313
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	48, 277
BspLI	GGNNCC	4 cut(s)	234, 283, 365, 401
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	2 cut(s)	93, 254
BspT107I	GGYRCC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	15, 342
BssMI	GATC	5 cut(s)	46, 98, 217, 259, 313
BssNI	GRCGYC	1 cut(s)	375
BssT1I	CCWWGG	1 cut(s)	342
Bst4CI	ACNGT	3 cut(s)	111, 299, 310
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	2 cut(s)	35, 264
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	5 cut(s)	49, 101, 220, 262, 316
BstMBI	GATC	5 cut(s)	46, 98, 217, 259, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstSCI	CCNGG	2 cut(s)	14, 15
BstSFI	CTRYAG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	120, 165
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	2 cut(s)	217, 259
BstYI	RGATCY	2 cut(s)	217, 259
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	373
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	384
Cfr9I	CCCGGG	1 cut(s)	15
CpoI	CGGWCCG	1 cut(s)	384
CseI	GACGC	1 cut(s)	364
CspI	CGGWCCG	1 cut(s)	384
CviJI	RGCY	8 cut(s)	133, 171, 271, 294, 360, 366, 371, 402
CviKI_1	RGCY	8 cut(s)	133, 171, 271, 294, 360, 366, 371, 402
DdeI	CTNAG	2 cut(s)	35, 264
DpnI	GATC	5 cut(s)	48, 100, 219, 261, 315
DpnII	GATC	5 cut(s)	46, 98, 217, 259, 313
EaeI	YGGCCR	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	342
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	134, 179
FokI	GGATG	1 cut(s)	187
Fsp4HI	GCNGC	2 cut(s)	134, 179
FspBI	CTAG	2 cut(s)	303, 317
GluI	GCNGC	2 cut(s)	134, 179
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	3 cut(s)	16, 372, 440
HgaI	GACGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	375
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	3 cut(s)	16, 372, 440
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	46, 257
Hpy188III	TCNNGA	4 cut(s)	77, 244, 266, 329
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	2 cut(s)	99, 384
HpyCH4III	ACNGT	3 cut(s)	111, 299, 310
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	136, 163
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpyF3I	CTNAG	2 cut(s)	35, 264
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	375
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	5 cut(s)	46, 98, 217, 259, 313
LmnI	GCTCC	3 cut(s)	268, 363, 399
Lsp1109I	GCAGC	2 cut(s)	120, 165
LweI	GCATC	2 cut(s)	165, 189
MaeI	CTAG	2 cut(s)	303, 317
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	81
MalI	GATC	5 cut(s)	48, 100, 219, 261, 315
MboI	GATC	5 cut(s)	46, 98, 217, 259, 313
MboII	GAAGA	2 cut(s)	134, 468
MflI	RGATCY	2 cut(s)	217, 259
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	1 cut(s)	247
MluNI	TGGCCA	1 cut(s)	294
MnlI	CCTC	6 cut(s)	42, 61, 220, 273, 421, 430
Mox20I	TGGCCA	1 cut(s)	294
MroNI	GCCGGC	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	2 cut(s)	72, 288
Msp20I	TGGCCA	1 cut(s)	294
MspI	CCGG	3 cut(s)	16, 372, 440
MspR9I	CCNGG	2 cut(s)	16, 17
Mva1269I	GAATGC	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	372
NaeI	GCCGGC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	16, 17
NdeII	GATC	5 cut(s)	46, 98, 217, 259, 313
NgoMIV	GCCGGC	1 cut(s)	371
NlaIV	GGNNCC	4 cut(s)	234, 283, 365, 401
PctI	GAATGC	1 cut(s)	435
PdiI	GCCGGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	135, 180
PshBI	ATTAAT	1 cut(s)	288
PspN4I	GGNNCC	4 cut(s)	234, 283, 365, 401
PspPI	GGNCC	1 cut(s)	384
PsuI	RGATCY	2 cut(s)	217, 259
Rsr2I	CGGWCCG	1 cut(s)	384
RsrII	CGGWCCG	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	72, 288
SatI	GCNGC	2 cut(s)	134, 179
Sau3AI	GATC	5 cut(s)	46, 98, 217, 259, 313
Sau96I	GGNCC	1 cut(s)	384
ScrFI	CCNGG	2 cut(s)	16, 17
SetI	ASST	7 cut(s)	44, 72, 88, 97, 273, 413, 422
SfaNI	GCATC	2 cut(s)	165, 189
SfcI	CTRYAG	1 cut(s)	203
SinI	GGWCC	1 cut(s)	384
SmaI	CCCGGG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	230
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	2 cut(s)	303, 317
StyD4I	CCNGG	2 cut(s)	14, 15
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	111, 299, 310
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	66, 97, 197
TaqII	GACCGA	1 cut(s)	372
TasI	AATT	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	72, 288
Tru9I	TTAA	2 cut(s)	72, 288
TseI	GCWGC	2 cut(s)	133, 178
TspGWI	ACGGA	2 cut(s)	368, 376
TspMI	CCCGGG	1 cut(s)	15
Van91I	CCANNNNNTGG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	384
VspI	ATTAAT	1 cut(s)	288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	2 cut(s)	303, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.