Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023010.1

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Reverse (-)

548 .. 1816

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023010.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggcctccgcccacataagcactttaacggaggaaattgatggagtgagatggagagatctggtagaggcggtgccgattttcgggaattgcttcggagatcctcaggagcttttgcttggttccaatggccaccgttctaggacagttgatctaggagattttcaagaaaacaactccttggtcaagcagttcggctggagccaagccggcgtccgtcgatccgtttcaacaaggagcctaacaacctctacagcctccactcctaaaagcattccggtttggcaaacaagaagactgttgagtattcaggctgcaggcaaagaccagtctgtggtgctcgccaccaccaagaccaggaggcagaacaagccaaccagtttggttcacaagtatgtgatgaggaaggattttcgtctcacggccaaggctgtcaccaaccaggtaccgaatactccattcactgttctgtggaatgaaatgaatgataataacaatgatgtatgtgatgcgtttagtttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

174

Amino Acids

19.44

Weight (kDa)

9.56

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	445
AccB1I	GGYRCC	2 cut(s)	73, 445
AccB7I	CCANNNNNTGG	1 cut(s)	334
AciI	CCGC	2 cut(s)	9, 71
AclWI	GGATC	2 cut(s)	95, 216
AcoI	YGGCCR	2 cut(s)	130, 423
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	3 cut(s)	83, 334, 357
AgsI	TTSAA	2 cut(s)	167, 231
AjnI	CCWGG	2 cut(s)	356, 441
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	95, 216
AoxI	GGCC	3 cut(s)	3, 130, 423
ApeKI	GCWGC	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	92
Asp718I	GGTACC	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	2 cut(s)	73, 445
BbsI	GAAGAC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	35, 45
BceAI	ACGGC	1 cut(s)	438
BciT130I	CCWGG	2 cut(s)	358, 443
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	141, 155
BfmI	CTRYAG	2 cut(s)	252, 315
BglI	GCCNNNNNGGC	1 cut(s)	210
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	358, 443
BmiI	GGNNCC	5 cut(s)	75, 124, 203, 239, 447
BmrFI	CCNGG	2 cut(s)	358, 443
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	220
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	180, 426
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 334, 357
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	328, 378
Bse21I	CCTNAGG	1 cut(s)	105
BseBI	CCWGG	2 cut(s)	358, 443
BseDI	CCNNGG	2 cut(s)	180, 426
BseLI	CCNNNNNNNGG	3 cut(s)	83, 334, 357
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	328, 378
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	3 cut(s)	5, 132, 425
BshNI	GGYRCC	2 cut(s)	73, 445
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	210, 278
BslI	CCNNNNNNNGG	3 cut(s)	83, 334, 357
BsmAI	GTCTC	1 cut(s)	422
BsmBI	CGTCTC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	5, 132, 425
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	58, 100, 151, 221
BspACI	CCGC	2 cut(s)	9, 71
BspANI	GGCC	3 cut(s)	5, 132, 425
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	5 cut(s)	75, 124, 203, 239, 447
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	95, 216
BspT107I	GGYRCC	2 cut(s)	73, 445
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	328, 378
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	180, 426
BssMI	GATC	4 cut(s)	58, 100, 151, 221
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	180, 426
Bst2UI	CCWGG	2 cut(s)	358, 443
Bst4CI	ACNGT	4 cut(s)	137, 148, 300, 466
BstACI	GRCGYC	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	211, 319, 342
BstDEI	CTNAG	1 cut(s)	105
BstKTI	GATC	4 cut(s)	61, 103, 154, 224
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	58, 100, 151, 221
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 370
BstNI	CCWGG	2 cut(s)	358, 443
BstSCI	CCNGG	2 cut(s)	356, 441
BstSFI	CTRYAG	2 cut(s)	252, 315
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	58, 100
BstYI	RGATCY	2 cut(s)	58, 100
Bsu36I	CCTNAGG	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	5, 132, 425
BtsIMutI	CAGTG	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	211, 319, 342
Cfr10I	RCCGGY	1 cut(s)	209
CseI	GACGC	1 cut(s)	202
CsiI	ACCWGGT	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	446
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	4 cut(s)	60, 102, 153, 223
DpnII	GATC	4 cut(s)	58, 100, 151, 221
EaeI	YGGCCR	2 cut(s)	130, 423
Eco130I	CCWWGG	2 cut(s)	180, 426
Eco81I	CCTNAGG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	356, 441
EcoT14I	CCWWGG	2 cut(s)	180, 426
ErhI	CCWWGG	2 cut(s)	180, 426
Esp3I	CGTCTC	1 cut(s)	422
FaiI	YATR	3 cut(s)	17, 396, 505
Fnu4HI	GCNGC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	141, 155
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	5, 132, 425
HapII	CCGG	2 cut(s)	210, 278
HgaI	GACGC	1 cut(s)	202
Hin1I	GRCGYC	1 cut(s)	213
HpaII	CCGG	2 cut(s)	210, 278
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	1 cut(s)	98
Hpy188III	TCNNGA	3 cut(s)	85, 107, 167
Hpy8I	GTNNAC	1 cut(s)	388
Hpy99I	CGWCG	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	4 cut(s)	137, 148, 300, 466
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 370
HpyF3I	CTNAG	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	213
KpnI	GGTACC	1 cut(s)	449
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	58, 100, 151, 221
LmnI	GCTCC	3 cut(s)	109, 201, 237
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	499
MabI	ACCWGGT	1 cut(s)	441
MaeI	CTAG	2 cut(s)	141, 155
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	60, 102, 153, 223
MboI	GATC	4 cut(s)	58, 100, 151, 221
MboII	GAAGA	1 cut(s)	306
MflI	RGATCY	2 cut(s)	58, 100
MhlI	GDGCHC	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	2 cut(s)	36, 88
MluNI	TGGCCA	1 cut(s)	132
MnlI	CCTC	8 cut(s)	16, 25, 61, 114, 259, 268, 354, 396
Mox20I	TGGCCA	1 cut(s)	132
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	2 cut(s)	210, 278
MspR9I	CCNGG	2 cut(s)	358, 443
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	358, 443
MwoI	GCNNNNNNNGC	2 cut(s)	210, 370
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	4 cut(s)	58, 100, 151, 221
NgoMIV	GCCGGC	1 cut(s)	209
NlaIV	GGNNCC	5 cut(s)	75, 124, 203, 239, 447
NmuCI	GTSAC	1 cut(s)	433
PctI	GAATGC	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	92
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	356, 441
PspGI	CCWGG	2 cut(s)	356, 441
PspN4I	GGNNCC	5 cut(s)	75, 124, 203, 239, 447
PstI	CTGCAG	1 cut(s)	319
PsuI	RGATCY	2 cut(s)	58, 100
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	4 cut(s)	58, 100, 151, 221
ScrFI	CCNGG	2 cut(s)	358, 443
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	3 cut(s)	114, 251, 447
SexAI	ACCWGGT	1 cut(s)	441
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	2 cut(s)	252, 315
SmiMI	CAYNNNNRTG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	36, 88
SsiI	CCGC	2 cut(s)	9, 71
SspMI	CTAG	2 cut(s)	141, 155
StyD4I	CCNGG	2 cut(s)	356, 441
StyI	CCWWGG	2 cut(s)	180, 426
TaaI	ACNGT	4 cut(s)	137, 148, 300, 466
TaqI	TCGA	1 cut(s)	220
TasI	AATT	2 cut(s)	36, 88
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	2 cut(s)	492, 497
TspGWI	ACGGA	3 cut(s)	44, 206, 214
TspRI	CASTG	1 cut(s)	469
Van91I	CCANNNNNTGG	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	141, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.