Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Reverse (-)

36668358 .. 36668883

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG350800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCACCGTTTCAGGACAGTTGATCTGGGAGATTGTTAAGAAGAACAACTCCTTGGTCAAGCAGTTCAGCCGGAGCCAAGCCGGCGTCCGTCGGTCCATTTCAACTAGGATTCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACAGTTGAGTATTCAGGCTGGAGGCAAAGACCAGTCAGTGGTGCTCGCCACCACTAAAACCAGGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTCTGTGATGAGGAAGGATTTTCGTCACATGGCCAAGGCCGTTACCAACCAGGTACCGAATACTCCATTCACTGTTCTGTGGAATGAAATGAATGATAATAACAATGATGTATGTGATGCGTTTAGTTTTCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

134

Amino Acids

15.11

Weight (kDa)

11.05

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	8 - 109	9.4e-10	Ribosomal L28e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	208
AcoI	YGGCCR	2 cut(s)	3, 297
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	230, 315
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
Alw21I	GWGCWC	1 cut(s)	216
AoxI	GGCC	3 cut(s)	3, 297, 303
Asp718I	GGTACC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	96
AvaII	GGWCC	1 cut(s)	96
BalI	TGGCCA	2 cut(s)	5, 299
BanI	GGYRCC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	216
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	2 cut(s)	232, 317
BfaI	CTAG	1 cut(s)	108
BglI	GCCNNNNNGGC	1 cut(s)	84
Bme1390I	CCNGG	2 cut(s)	232, 317
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	2 cut(s)	77, 321
BmrFI	CCNGG	2 cut(s)	232, 317
BmsI	GCATC	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	54, 300
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	2 cut(s)	202, 252
BseBI	CCWGG	2 cut(s)	232, 317
BseDI	CCNNGG	2 cut(s)	54, 300
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	202, 252
BshFI	GGCC	3 cut(s)	5, 299, 305
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	73, 84, 152
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	5, 299, 305
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	24
BspANI	GGCC	3 cut(s)	5, 299, 305
BspLI	GGNNCC	2 cut(s)	77, 321
BspT107I	GGYRCC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	202, 252
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	54, 300
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	54, 300
Bst2UI	CCWGG	2 cut(s)	232, 317
Bst4CI	ACNGT	4 cut(s)	10, 21, 174, 340
BstACI	GRCGYC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	85, 216
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 244
BstNI	CCWGG	2 cut(s)	232, 317
BstSCI	CCNGG	2 cut(s)	230, 315
BstV2I	GAAGAC	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	5, 299, 305
BtsIMutI	CAGTG	2 cut(s)	213, 336
Cac8I	GCNNGC	2 cut(s)	85, 216
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	1 cut(s)	76
CsiI	ACCWGGT	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	8 cut(s)	5, 72, 78, 83, 188, 247, 299, 305
CviKI_1	RGCY	8 cut(s)	5, 72, 78, 83, 188, 247, 299, 305
CviQI	GTAC	1 cut(s)	320
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	2 cut(s)	3, 297
Eco130I	CCWWGG	2 cut(s)	54, 300
Eco47I	GGWCC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	230, 315
EcoT14I	CCWWGG	2 cut(s)	54, 300
ErhI	CCWWGG	2 cut(s)	54, 300
FaeI	CATG	1 cut(s)	298
FaiI	YATR	2 cut(s)	296, 379
FatI	CATG	1 cut(s)	294
FspBI	CTAG	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	5, 299, 305
HapII	CCGG	3 cut(s)	73, 84, 152
HgaI	GACGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	298
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	3 cut(s)	73, 84, 152
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	15
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	4 cut(s)	10, 21, 174, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 244
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	75
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	2 cut(s)	290, 307
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	55, 180
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	2 cut(s)	5, 299
MluNI	TGGCCA	2 cut(s)	5, 299
MnlI	CCTC	4 cut(s)	133, 142, 185, 270
Mox20I	TGGCCA	2 cut(s)	5, 299
MroNI	GCCGGC	1 cut(s)	83
MscI	TGGCCA	2 cut(s)	5, 299
MseI	TTAA	1 cut(s)	39
Msp20I	TGGCCA	2 cut(s)	5, 299
MspI	CCGG	3 cut(s)	73, 84, 152
MspR9I	CCNGG	2 cut(s)	232, 317
Mva1269I	GAATGC	1 cut(s)	147
MvaI	CCWGG	2 cut(s)	232, 317
MwoI	GCNNNNNNNGC	2 cut(s)	84, 244
NaeI	GCCGGC	1 cut(s)	85
NdeII	GATC	1 cut(s)	24
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	2 cut(s)	77, 321
NmuCI	GTSAC	1 cut(s)	290
PctI	GAATGC	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	112
PflMI	CCANNNNNTGG	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	230, 315
PspGI	CCWGG	2 cut(s)	230, 315
PspN4I	GGNNCC	2 cut(s)	77, 321
PspPI	GGNCC	1 cut(s)	96
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	232, 317
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	3 cut(s)	125, 134, 321
SexAI	ACCWGGT	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	230, 315
StyI	CCWWGG	2 cut(s)	54, 300
TaaI	ACNGT	4 cut(s)	10, 21, 174, 340
TaqII	GACCGA	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	213, 343
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	366, 371
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	213, 343
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	96
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.