Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Reverse (-)

52932244 .. 52932572

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGAGAGATCTGGTAGAGGAGGCGCCAATTTCCAGGACTTGCTTTGGAGATCCTCAGGAGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTGGGAGATTGGCAACTCCTTGGTCAAGCAGTTCGGCCGGAGCCACGCCAGCGTCCATTTCAACAAGGAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

55

Amino Acids

6.12

Weight (kDa)

11.52

Isoelectric Point (pI)

63.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	2 cut(s)	70, 128
AcyI	GRCGYC	1 cut(s)	24
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	33
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	70, 128
AspLEI	GCGC	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	35
BfaI	CTAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	27
BglII	AGATCT	1 cut(s)	8
Bme1390I	CCNGG	1 cut(s)	35
BmiI	GGNNCC	4 cut(s)	25, 64, 135, 163
BmrFI	CCNGG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	112
Bse21I	CCTNAGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	33
BseX3I	CGGCCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	72, 130
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	131
BsnI	GGCC	2 cut(s)	72, 130
Bsp143I	GATC	3 cut(s)	8, 50, 91
BspANI	GGCC	2 cut(s)	72, 130
BspCNI	CTCAG	1 cut(s)	68
BspLI	GGNNCC	4 cut(s)	25, 64, 135, 163
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	3 cut(s)	8, 50, 91
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	2 cut(s)	77, 88
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	3 cut(s)	11, 53, 94
BstMBI	GATC	3 cut(s)	8, 50, 91
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstX2I	RGATCY	2 cut(s)	8, 50
BstYI	RGATCY	2 cut(s)	8, 50
BstZI	CGGCCG	1 cut(s)	128
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	72, 130
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	1 cut(s)	26
CseI	GACGC	1 cut(s)	134
CviJI	RGCY	4 cut(s)	72, 130, 136, 164
CviKI_1	RGCY	4 cut(s)	72, 130, 136, 164
DdeI	CTNAG	1 cut(s)	55
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	3 cut(s)	10, 52, 93
DpnII	GATC	3 cut(s)	8, 50, 91
EaeI	YGGCCR	2 cut(s)	70, 128
EagI	CGGCCG	1 cut(s)	128
EclXI	CGGCCG	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	112
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	25
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	2 cut(s)	72, 130
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HpaII	CCGG	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	57
HpyCH4III	ACNGT	2 cut(s)	77, 88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	55
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	8, 50, 91
LmnI	GCTCC	2 cut(s)	133, 161
LpnPI	CCDG	6 cut(s)	20, 42, 47, 80, 144, 155
MaeI	CTAG	1 cut(s)	81
MalI	GATC	3 cut(s)	10, 52, 93
MboI	GATC	3 cut(s)	8, 50, 91
MflI	RGATCY	2 cut(s)	8, 50
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	1 cut(s)	28
MluNI	TGGCCA	1 cut(s)	72
Mly113I	GGCGCC	1 cut(s)	24
MnlI	CCTC	4 cut(s)	11, 14, 53, 64
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	142
NarI	GGCGCC	1 cut(s)	24
NdeII	GATC	3 cut(s)	8, 50, 91
NlaIV	GGNNCC	4 cut(s)	25, 64, 135, 163
PfoI	TCCNGGA	1 cut(s)	33
PluTI	GGCGCC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	4 cut(s)	25, 64, 135, 163
PsuI	RGATCY	2 cut(s)	8, 50
Sau3AI	GATC	3 cut(s)	8, 50, 91
ScrFI	CCNGG	1 cut(s)	35
SetI	ASST	1 cut(s)	64
SfoI	GGCGCC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	28
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	33
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	77, 88
TasI	AATT	1 cut(s)	28
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.