Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

40691266 .. 40692068

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACCACTGTTCTAGGACAGTTGATCTGGGAGATTGTCAAGAAGAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGTTTGGCAAAGAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACTATTCTGTGGTGCTCACCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTCCACAAGTCTGTGATGAGGAAGGATTTTCGTGTCACGGCCACGGCTGTCACCAACCAGCAGACATTTAGGTATAATGATTATGATGCAAGGGATGATATAATTAAGAGAAGCGTTAGGGAATTTGGAGTTGGAAAAAAAAAAATCTTATCTTGTTGCTATAGGGTCCAGCTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

121

Amino Acids

14.13

Weight (kDa)

10.48

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	158
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 300, 332
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	144
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	187, 352
AsuHPI	GGTGA	2 cut(s)	136, 229
AvaII	GGWCC	2 cut(s)	187, 352
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	240, 246
BciT130I	CCWGG	1 cut(s)	160
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	2 cut(s)	117, 346
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	2 cut(s)	187, 352
BmgT120I	GGNCC	2 cut(s)	187, 352
BmiI	GGNNCC	2 cut(s)	77, 353
BmrFI	CCNGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	54, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	2 cut(s)	54, 228
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	227
BspLI	GGNNCC	2 cut(s)	77, 353
BspMAI	CTGCAG	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	54, 228
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	10, 21, 102
BstC8I	GCNNGC	1 cut(s)	121
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	158
BstSFI	CTRYAG	2 cut(s)	117, 346
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	187, 352
CviJI	RGCY	7 cut(s)	72, 78, 116, 175, 227, 233, 358
CviKI_1	RGCY	7 cut(s)	72, 78, 116, 175, 227, 233, 358
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	187, 352
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaiI	YATR	4 cut(s)	261, 270, 287, 348
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	227
HphI	GGTGA	2 cut(s)	136, 229
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	3 cut(s)	10, 21, 102
HpyCH4V	TGCA	2 cut(s)	119, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	8 cut(s)	13, 58, 98, 105, 145, 172, 193, 257
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	220, 235
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	3 cut(s)	55, 105, 108
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	2 cut(s)	288, 308
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	1 cut(s)	198
MseI	TTAA	2 cut(s)	291, 364
MspA1I	CMGCKG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	24
NlaIV	GGNNCC	2 cut(s)	77, 353
NmuCI	GTSAC	2 cut(s)	220, 235
PkrI	GCNGC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	77, 353
PspPI	GGNCC	2 cut(s)	187, 352
PstI	CTGCAG	1 cut(s)	121
PvuII	CAGCTG	1 cut(s)	358
SaqAI	TTAA	2 cut(s)	291, 364
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	2 cut(s)	187, 352
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	2 cut(s)	260, 360
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	2 cut(s)	117, 346
SinI	GGWCC	2 cut(s)	187, 352
Sse9I	AATT	2 cut(s)	288, 308
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	3 cut(s)	10, 21, 102
TasI	AATT	2 cut(s)	288, 308
Tru1I	TTAA	2 cut(s)	291, 364
Tru9I	TTAA	2 cut(s)	291, 364
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	2 cut(s)	220, 235
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	220, 235
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	187, 352
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.