Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

2217716 .. 2218495

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0027900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGCGGTGCAGCGACAGTGGCAGGCTCACCCATGTGGGATTGCCCTGTTTCAGGCCCGCCTTTCGATGAGGCTCTGAGGGAAGCGGTGCAGTCGACCAGCAGAAATTTGGATCAGGTTATGGTCAGAGCGGATGGCACACCGGTAGCTGGACCTTCGTTGGTGTTCAGAGCGCAAGGAGGTGGGGAGGGAACTGACAGTTTGAATCGCTTCATGCCAGCCTTGACTCTTAAGGCTAGAGTATGGAGGGCTCTTATACCCCGTCCTTCTGGGGAGGGTACCTCTGGCACTAAAGATGTAGTTGAGGATGATGGCCATGGGGGTCATTTGACAGTGGAACCGGAGAGGGAAGGAGAGGCTAGTGCAGTTGGCTTGGAAATCAATAGGGACGGCCAGAACCTAGAACCTCTATATGGGGAGTTGGTGTTGGTTACGAAGACTTTAATTGATGGGCTGAGAAGGAAACGGATGGAGGATGATGGAGTTTCGCCAAAGAAGCCACGGCTTAGTCTTGCGATTGGTAGAACCAATTTGGATAATGTAACAATGGGATTAGTTGCTGTGAATTCTTCACAAGAGAGCAAGAAGAAGCGTGGCCGTCCTCGAGGTGTCAAGAATAAAGTGAAAGTTGATTGCAAGGTGGTGAAAACCTCACCTATGAAGAAAGGCAAGAATTCGAAGAAAACAGAGAAACTTGCGAATGGGCTACCAGAGCTTACTTTACCAGTTGAGAGGGGTACACCTAAAGCCTCCAAGGGTAAGGATGTAGTAGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

259

Amino Acids

27.58

Weight (kDa)

9.64

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	603
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	95
AciI	CCGC	4 cut(s)	6, 59, 86, 131
AclWI	GGATC	1 cut(s)	120
AcoI	YGGCCR	3 cut(s)	313, 391, 595
AcsI	RAATTY	3 cut(s)	106, 565, 673
AfaI	GTAC	2 cut(s)	280, 739
AfiI	CCNNNNNNNGG	3 cut(s)	53, 149, 413
AflII	CTTAAG	1 cut(s)	230
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	205
AleI	CACNNNNGTG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	149, 715
AluI	AGCT	2 cut(s)	149, 715
AlwI	GGATC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	4 cut(s)	55, 313, 391, 595
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	3 cut(s)	106, 565, 673
AsiGI	ACCGGT	1 cut(s)	142
Asp700I	GAANNNNTTC	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	56, 152
AsuHPI	GGTGA	3 cut(s)	21, 645, 655
AsuII	TTCGAA	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	5 cut(s)	128, 305, 443, 463, 473
BceAI	ACGGC	3 cut(s)	406, 518, 582
BfaI	CTAG	3 cut(s)	237, 360, 401
BfrI	CTTAAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	152
BmeT110I	CYCGRG	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	56, 152
BmiI	GGNNCC	2 cut(s)	280, 339
BpiI	GAAGAC	1 cut(s)	443
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu14I	TTCGAA	1 cut(s)	677
BsaJI	CCNNGG	3 cut(s)	316, 500, 753
BsaWI	WCCGGW	2 cut(s)	142, 340
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 149, 413
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	316, 500, 753
BseGI	GGATG	5 cut(s)	139, 313, 474, 481, 769
BseLI	CCNNNNNNNGG	3 cut(s)	53, 149, 413
BseMII	CTCAG	2 cut(s)	68, 446
BseNI	ACTGG	1 cut(s)	725
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	3 cut(s)	30, 110, 384
BshFI	GGCC	4 cut(s)	57, 315, 393, 597
BshNI	GGYRCC	1 cut(s)	278
BshTI	ACCGGT	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	2 cut(s)	143, 341
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	53, 149, 413
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	4 cut(s)	57, 315, 393, 597
BsoBI	CYCGRG	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	112
Bsp19I	CCATGG	1 cut(s)	316
BspACI	CCGC	4 cut(s)	6, 59, 86, 131
BspANI	GGCC	4 cut(s)	57, 315, 393, 597
BspCNI	CTCAG	2 cut(s)	69, 447
BspLI	GGNNCC	2 cut(s)	280, 339
BspPI	GGATC	1 cut(s)	120
BspT104I	TTCGAA	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	316, 500, 753
BssMI	GATC	1 cut(s)	112
BssT1I	CCWWGG	2 cut(s)	316, 753
Bst4CI	ACNGT	3 cut(s)	19, 200, 334
BstAFI	CTTAAG	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	3 cut(s)	25, 59, 219
BstDEI	CTNAG	3 cut(s)	77, 455, 506
BstDSI	CCRYGG	2 cut(s)	316, 500
BstENI	CCTNNNNNAGG	1 cut(s)	51
BstF5I	GGATG	5 cut(s)	139, 313, 474, 481, 769
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 496, 712
BstV1I	GCAGC	1 cut(s)	23
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	4 cut(s)	57, 315, 393, 597
BtgI	CCRYGG	2 cut(s)	316, 500
BtsCI	GGATG	5 cut(s)	139, 313, 474, 481, 769
BtsIMutI	CAGTG	2 cut(s)	24, 339
Cac8I	GCNNGC	3 cut(s)	25, 59, 219
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	2 cut(s)	56, 152
Csp6I	GTAC	2 cut(s)	279, 738
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	3 cut(s)	34, 214, 317
CviQI	GTAC	2 cut(s)	279, 738
DdeI	CTNAG	3 cut(s)	77, 455, 506
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	3 cut(s)	313, 391, 595
Eco130I	CCWWGG	2 cut(s)	316, 753
Eco24I	GRGCYC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	51
EcoRI	GAATTC	2 cut(s)	565, 673
EcoT14I	CCWWGG	2 cut(s)	316, 753
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	2 cut(s)	316, 753
FaeI	CATG	3 cut(s)	37, 217, 320
FaiI	YATR	9 cut(s)	35, 122, 215, 244, 257, 318, 412, 414, 659
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	33, 213, 316
FauI	CCCGC	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	5 cut(s)	146, 320, 481, 488, 776
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	3 cut(s)	237, 360, 401
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	57, 315, 393, 597
HapII	CCGG	2 cut(s)	143, 341
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	3 cut(s)	37, 217, 320
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	205, 226
HpaII	CCGG	2 cut(s)	143, 341
HphI	GGTGA	3 cut(s)	21, 645, 655
Hpy166II	GTNNAC	2 cut(s)	96, 740
Hpy188I	TCNGA	3 cut(s)	78, 128, 170
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	2 cut(s)	96, 740
HpyAV	CCTTC	4 cut(s)	165, 276, 344, 453
HpyCH4III	ACNGT	3 cut(s)	19, 200, 334
HpyCH4V	TGCA	4 cut(s)	11, 91, 365, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 496, 712
HpyF3I	CTNAG	3 cut(s)	77, 455, 506
Hsp92II	CATG	3 cut(s)	37, 217, 320
HspAI	GCGC	1 cut(s)	173
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	3 cut(s)	237, 360, 401
MaeIII	GTNAC	2 cut(s)	430, 541
MalI	GATC	1 cut(s)	114
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	1 cut(s)	112
MboII	GAAGA	5 cut(s)	448, 561, 598, 673, 691
MhlI	GDGCHC	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	5 cut(s)	106, 444, 529, 565, 673
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	220
Mox20I	TGGCCA	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	2 cut(s)	231, 443
MslI	CAYNNNNRTG	1 cut(s)	34
Msp20I	TGGCCA	1 cut(s)	315
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	2 cut(s)	143, 341
MwoI	GCNNNNNNNGC	3 cut(s)	20, 496, 712
NcoI	CCATGG	1 cut(s)	316
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	37, 217, 320
NlaIV	GGNNCC	2 cut(s)	280, 339
NspV	TTCGAA	1 cut(s)	677
OliI	CACNNNNGTG	1 cut(s)	34
PaeR7I	CTCGAG	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PspN4I	GGNNCC	2 cut(s)	280, 339
PspPI	GGNCC	2 cut(s)	56, 152
PspXI	VCTCGAGB	1 cut(s)	603
RsaI	GTAC	2 cut(s)	280, 739
RsaNI	GTAC	2 cut(s)	279, 738
RseI	CAYNNNNRTG	1 cut(s)	34
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	231, 443
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	2 cut(s)	56, 152
SchI	GAGTC	1 cut(s)	220
SduI	GDGCHC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	603
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	603
SmiMI	CAYNNNNRTG	1 cut(s)	34
SmlI	CTYRAG	2 cut(s)	230, 603
SmoI	CTYRAG	2 cut(s)	230, 603
Sse9I	AATT	5 cut(s)	106, 444, 529, 565, 673
SsiI	CCGC	4 cut(s)	6, 59, 86, 131
SspMI	CTAG	3 cut(s)	237, 360, 401
StyI	CCWWGG	2 cut(s)	316, 753
TaaI	ACNGT	3 cut(s)	19, 200, 334
TaqI	TCGA	4 cut(s)	66, 95, 604, 677
TasI	AATT	5 cut(s)	106, 444, 529, 565, 673
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	231, 443
Tru9I	TTAA	2 cut(s)	231, 443
TscAI	CASTG	2 cut(s)	24, 339
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	202, 674
TspGWI	ACGGA	1 cut(s)	481
TspRI	CASTG	2 cut(s)	24, 339
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	152
XagI	CCTNNNNNAGG	1 cut(s)	51
XapI	RAATTY	3 cut(s)	106, 565, 673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	3 cut(s)	237, 360, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.