Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

56167018 .. 56184207

Gene Structure 17190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG413700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGACAAAACTGCAGGCCTAGTCCTGCTGTCTTTCTTTTGCGTCTCTTTTGCTGGTTGTGTCTCGAAGTTCCCAGAGAAGAAGTTTGATGGGGAAACGGTTCGTTTGGATTGGATGGGATCGTTGGATCGCGGTGGTGGTTCGCGATGCAGTGATGGAGGGGCCTCGCTTCTGAGAGGCTGGAGAGTTGGAATCGGGGTTCTGCGTTTTGCTGGTTTGTCTCCAGCATGGGCTATGCGAAGTCGTGGCTTTGATGGTGTTGTTGGGCCGTCAGAAGTGGTCGTCGGCGTCGATCTCGTCAGCGATGGCTATTGCAGTTTGCCATTCTCCATTGCAGAGGCGGTGCCGATTTTTGGGAATTGCTTCGGAGATCCTCAGGAGCTTTTGCTTGGTTCCAATGGCCACCGTTCTAGGATAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCGTCCGTCGGTCAGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGTATTTTTGTCTCACGGCCAAGGCTGTCACCAACCAGGTCCAGCGAGATCTGTATCTTTTACTTTCAAGGTTTATATTCTTTTATAACTCAGTTGACAAACTTGAGAGATTCTTAAGGCACTTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCCTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGGTTTGCTATGATTGGAGTAAGGGCGCAGAAAATCACAATCCGGCCACAGCAAAGAACTACATTTACCTCCATGTTCCACAGGAATCTGAGGTCAAAAGCAAGCCACGAATCTCAACTGGTGGAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.7

Weight (kDa)

9.51

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AccB1I	GGYRCC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccII	CGCG	2 cut(s)	132, 145
AciI	CCGC	2 cut(s)	132, 341
AclWI	GGATC	3 cut(s)	127, 135, 365
AcoI	YGGCCR	3 cut(s)	400, 693, 912
AcyI	GRCGYC	2 cut(s)	288, 483
AfiI	CCNNNNNNNGG	2 cut(s)	353, 604
AflII	CTTAAG	1 cut(s)	790
AgsI	TTSAA	3 cut(s)	501, 744, 857
AjnI	CCWGG	1 cut(s)	711
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	4 cut(s)	49, 67, 225, 692
AlwI	GGATC	3 cut(s)	127, 135, 365
AoxI	GGCC	6 cut(s)	16, 162, 266, 400, 693, 912
ApeKI	GCWGC	1 cut(s)	584
Asp700I	GAANNNNTTC	2 cut(s)	99, 362
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	4 cut(s)	162, 266, 715, 833
AsuHPI	GGTGA	1 cut(s)	697
AvaII	GGWCC	2 cut(s)	715, 833
AxyI	CCTNAGG	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	5 cut(s)	83, 109, 149, 248, 299
BceAI	ACGGC	2 cut(s)	253, 708
BciT130I	CCWGG	1 cut(s)	713
BcoDI	GTCTC	4 cut(s)	49, 67, 225, 692
BfaI	CTAG	3 cut(s)	20, 411, 425
BfmI	CTRYAG	3 cut(s)	12, 585, 837
BfrI	CTTAAG	1 cut(s)	790
BglI	GCCNNNNNGGC	1 cut(s)	480
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	1 cut(s)	585
BlsI	GCNGC	1 cut(s)	586
Bme1390I	CCNGG	1 cut(s)	713
Bme18I	GGWCC	2 cut(s)	715, 833
BmgT120I	GGNCC	4 cut(s)	162, 266, 715, 833
BmiI	GGNNCC	5 cut(s)	163, 345, 394, 473, 509
BmrFI	CCNGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	571
BpmI	CTGGAG	3 cut(s)	202, 207, 490
BpuEI	CTTGAG	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	729
BsaHI	GRCGYC	2 cut(s)	288, 483
BsaJI	CCNNGG	2 cut(s)	450, 696
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 604
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	3 cut(s)	598, 648, 991
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	729
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	2 cut(s)	450, 696
BseGI	GGATG	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	729
BseLI	CCNNNNNNNGG	2 cut(s)	353, 604
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	4 cut(s)	164, 389, 780, 948
BseNI	ACTGG	3 cut(s)	598, 648, 991
BseXI	GCAGC	1 cut(s)	571
Bsh1236I	CGCG	2 cut(s)	132, 145
BshFI	GGCC	6 cut(s)	18, 164, 268, 402, 695, 914
BshNI	GGYRCC	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	3 cut(s)	480, 548, 911
BslI	CCNNNNNNNGG	2 cut(s)	353, 604
BsmAI	GTCTC	4 cut(s)	49, 67, 225, 692
BsmBI	CGTCTC	1 cut(s)	49
BsmI	GAATGC	2 cut(s)	543, 820
BsnI	GGCC	6 cut(s)	18, 164, 268, 402, 695, 914
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
Bsp68I	TCGCGA	1 cut(s)	145
BspACI	CCGC	2 cut(s)	132, 341
BspANI	GGCC	6 cut(s)	18, 164, 268, 402, 695, 914
BspCNI	CTCAG	4 cut(s)	165, 388, 779, 949
BspFNI	CGCG	2 cut(s)	132, 145
BspLI	GGNNCC	5 cut(s)	163, 345, 394, 473, 509
BspMAI	CTGCAG	3 cut(s)	16, 589, 841
BspPI	GGATC	3 cut(s)	127, 135, 365
BspT107I	GGYRCC	1 cut(s)	343
BspTI	CTTAAG	1 cut(s)	790
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	3 cut(s)	598, 648, 991
BssAI	RCCGGY	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	450, 696
BssMI	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
BssNI	GRCGYC	2 cut(s)	288, 483
BssT1I	CCWWGG	2 cut(s)	450, 696
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	3 cut(s)	100, 407, 570
BstACI	GRCGYC	2 cut(s)	288, 483
BstAFI	CTTAAG	1 cut(s)	790
BstC8I	GCNNGC	5 cut(s)	16, 481, 589, 612, 971
BstDEI	CTNAG	4 cut(s)	173, 375, 766, 957
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	2 cut(s)	132, 145
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	7 cut(s)	122, 130, 295, 373, 424, 727, 868
BstMAI	GTCTC	4 cut(s)	49, 67, 225, 692
BstMBI	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
BstMWI	GCNNNNNNNGC	2 cut(s)	480, 640
BstNI	CCWGG	1 cut(s)	713
BstSCI	CCNGG	1 cut(s)	711
BstSFI	CTRYAG	3 cut(s)	12, 585, 837
BstUI	CGCG	2 cut(s)	132, 145
BstV1I	GCAGC	1 cut(s)	571
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	2 cut(s)	370, 724
BstYI	RGATCY	2 cut(s)	370, 724
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	6 cut(s)	18, 164, 268, 402, 695, 914
BtgZI	GCGATG	2 cut(s)	160, 318
BtsCI	GGATG	1 cut(s)	120
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	157
BtuMI	TCGCGA	1 cut(s)	145
Cac8I	GCNNGC	5 cut(s)	16, 481, 589, 612, 971
CfoI	GCGC	1 cut(s)	896
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	4 cut(s)	162, 266, 715, 833
CseI	GACGC	3 cut(s)	31, 277, 472
CsiI	ACCWGGT	1 cut(s)	711
CviAII	CATG	2 cut(s)	228, 941
DdeI	CTNAG	4 cut(s)	173, 375, 766, 957
DpnI	GATC	7 cut(s)	121, 129, 294, 372, 423, 726, 867
DpnII	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
EaeI	YGGCCR	3 cut(s)	400, 693, 912
Eco130I	CCWWGG	2 cut(s)	450, 696
Eco147I	AGGCCT	1 cut(s)	18
Eco47I	GGWCC	2 cut(s)	715, 833
Eco81I	CCTNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	450, 696
ErhI	CCWWGG	2 cut(s)	450, 696
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	2 cut(s)	231, 944
FaiI	YATR	7 cut(s)	229, 236, 666, 752, 762, 879, 942
FatI	CATG	2 cut(s)	227, 940
Fnu4HI	GCNGC	1 cut(s)	585
FokI	GGATG	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	585
FspBI	CTAG	3 cut(s)	20, 411, 425
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	1 cut(s)	585
GsuI	CTGGAG	3 cut(s)	202, 207, 490
HaeIII	GGCC	6 cut(s)	18, 164, 268, 402, 695, 914
HapII	CCGG	3 cut(s)	480, 548, 911
HgaI	GACGC	3 cut(s)	31, 277, 472
HhaI	GCGC	1 cut(s)	896
Hin1I	GRCGYC	2 cut(s)	288, 483
Hin1II	CATG	2 cut(s)	231, 944
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	4 cut(s)	192, 786, 953, 978
HpaII	CCGG	3 cut(s)	480, 548, 911
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	2 cut(s)	658, 772
Hpy188I	TCNGA	4 cut(s)	174, 274, 368, 958
Hpy188III	TCNNGA	5 cut(s)	64, 144, 377, 437, 811
Hpy8I	GTNNAC	2 cut(s)	658, 772
Hpy99I	CGWCG	3 cut(s)	287, 293, 492
HpyCH4III	ACNGT	3 cut(s)	100, 407, 570
HpyCH4V	TGCA	7 cut(s)	14, 150, 315, 335, 587, 839, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	480, 640
HpyF3I	CTNAG	4 cut(s)	173, 375, 766, 957
Hsp92I	GRCGYC	2 cut(s)	288, 483
Hsp92II	CATG	2 cut(s)	231, 944
HspAI	GCGC	1 cut(s)	894
KroI	GCCGGC	1 cut(s)	479
KroNI	GCCGGC	1 cut(s)	481
Kzo9I	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
LmnI	GCTCC	3 cut(s)	379, 471, 507
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	1 cut(s)	137
MabI	ACCWGGT	1 cut(s)	711
MaeI	CTAG	3 cut(s)	20, 411, 425
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	7 cut(s)	121, 129, 294, 372, 423, 726, 867
MboI	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
MboII	GAAGA	2 cut(s)	91, 576
MflI	RGATCY	2 cut(s)	370, 724
MhlI	GDGCHC	1 cut(s)	612
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	402
MmeI	TCCRAC	2 cut(s)	105, 169
Mox20I	TGGCCA	1 cut(s)	402
MroNI	GCCGGC	1 cut(s)	479
MroXI	GAANNNNTTC	2 cut(s)	99, 362
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	1 cut(s)	791
MslI	CAYNNNNRTG	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	402
MspCI	CTTAAG	1 cut(s)	790
MspI	CCGG	3 cut(s)	480, 548, 911
MspR9I	CCNGG	1 cut(s)	713
Mva1269I	GAATGC	2 cut(s)	543, 820
MvaI	CCWGG	1 cut(s)	713
MvnI	CGCG	2 cut(s)	132, 145
MwoI	GCNNNNNNNGC	2 cut(s)	480, 640
NaeI	GCCGGC	1 cut(s)	481
NdeII	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
NgoMIV	GCCGGC	1 cut(s)	479
NlaIII	CATG	2 cut(s)	231, 944
NlaIV	GGNNCC	5 cut(s)	163, 345, 394, 473, 509
NmuCI	GTSAC	1 cut(s)	703
NruI	TCGCGA	1 cut(s)	145
PceI	AGGCCT	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	2 cut(s)	543, 820
PdiI	GCCGGC	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	99, 362
PfeI	GAWTC	4 cut(s)	192, 786, 953, 978
PflMI	CCANNNNNTGG	1 cut(s)	604
PkrI	GCNGC	1 cut(s)	586
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	711
PspN4I	GGNNCC	5 cut(s)	163, 345, 394, 473, 509
PspPI	GGNCC	4 cut(s)	162, 266, 715, 833
PsrI	GAACNNNNNNTAC	2 cut(s)	917, 949
PstI	CTGCAG	3 cut(s)	16, 589, 841
PsuI	RGATCY	2 cut(s)	370, 724
RruI	TCGCGA	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	1 cut(s)	585
Sau3AI	GATC	7 cut(s)	119, 127, 292, 370, 421, 724, 865
Sau96I	GGNCC	4 cut(s)	162, 266, 715, 833
ScrFI	CCNGG	1 cut(s)	713
SduI	GDGCHC	1 cut(s)	612
SetI	ASST	8 cut(s)	384, 521, 530, 717, 749, 873, 939, 963
SexAI	ACCWGGT	1 cut(s)	711
SfaNI	GCATC	1 cut(s)	137
SfcI	CTRYAG	3 cut(s)	12, 585, 837
SinI	GGWCC	2 cut(s)	715, 833
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	2 cut(s)	779, 790
SmoI	CTYRAG	2 cut(s)	779, 790
Sse9I	AATT	1 cut(s)	358
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	2 cut(s)	132, 341
SspMI	CTAG	3 cut(s)	20, 411, 425
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	711
StyI	CCWWGG	2 cut(s)	450, 696
TaaI	ACNGT	3 cut(s)	100, 407, 570
TaqI	TCGA	2 cut(s)	65, 291
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	1 cut(s)	358
TfiI	GAWTC	4 cut(s)	192, 786, 953, 978
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	1 cut(s)	584
Tsp45I	GTSAC	1 cut(s)	703
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	604
Vha464I	CTTAAG	1 cut(s)	790
VpaK11BI	GGWCC	2 cut(s)	715, 833
XmnI	GAANNNNTTC	2 cut(s)	99, 362
XspI	CTAG	3 cut(s)	20, 411, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.