Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005895

Physical Location & Seq

Genomic Coordinates Forward (+)

38535887 .. 38536599

Gene Structure 713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGAGATCTGGTAGAGGCGGTGCCGATTTTCGGGAATTGCTTCGGAGATCCTCAGGAGGTCCGATTTCATTCTTGAGCTTTACGAGACTTTTGCTTGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTTGGCTGGAGCCAAGCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCTGGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAAGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCGTCTCAGGCCCAAGGCTGTCACCAACCAGGTACCGAATACTCCATTCACTGTTCTGTGGAATGAAATGAATGATAATAACAATGATGTATGTGATGCGATTAGTTTTCTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L28e

Protein Analysis

169

Amino Acids

18.92

Weight (kDa)

10.92

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005895)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g06820
pyrus_communis	pycom13g16250
rosa_laevigata	RLG00000014744
rosa_multiflora	Rmu_sc0004368.1_g000007 Rmu_sc0020840.1_g000001 Rmu_sc0023010.1_g000001
rosa_roxburghii	Rroxscaffold_1G00074470 Rroxscaffold_1G00074480 Rroxscaffold_3G00245500 Rroxscaffold_4G00314580
rosa_rugosa	Rorug02G0027900 Rorug02G0445200 Rorug04G0184800 Rorug05G0358300 Rorug07G0319700.1
rosa_samantha	Rh1CG051300 Rh1DG131600 Rh2AG545400 Rh2CG479300 Rh4BG413700 Rh4CG274700 Rh6AG173000 Rh6AG233400 Rh6BG302600 Rh6BG438300 Rh7BG350800
rosa_wichuraiana	Rw5G039170 Rw6G020370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	23, 424
AccB7I	CCANNNNNTGG	1 cut(s)	313
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	109
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	33, 313
AgsI	TTSAA	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	1 cut(s)	81
AluI	AGCT	1 cut(s)	81
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	82, 401
AlwI	GGATC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	109, 401
ApeKI	GCWGC	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	62, 201, 402
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	62, 201
AxyI	CCTNAGG	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	111
BanI	GGYRCC	2 cut(s)	23, 424
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	1 cut(s)	422
BcoDI	GTCTC	2 cut(s)	82, 401
BfaI	CTAG	2 cut(s)	120, 134
BfmI	CTRYAG	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	189
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	2 cut(s)	62, 201
BmgT120I	GGNCC	3 cut(s)	62, 201, 402
BmiI	GGNNCC	5 cut(s)	25, 103, 182, 218, 426
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	97
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	159, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 313
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	2 cut(s)	307, 357
Bse21I	CCTNAGG	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	159, 405
BseLI	CCNNNNNNNGG	2 cut(s)	33, 313
BseMII	CTCAG	2 cut(s)	69, 412
BseNI	ACTGG	2 cut(s)	307, 357
BseXI	GCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	111, 403
BshNI	GGYRCC	2 cut(s)	23, 424
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	33, 313
BsmAI	GTCTC	2 cut(s)	82, 401
BsmBI	CGTCTC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	252
BsnI	GGCC	2 cut(s)	111, 403
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	8, 50, 130
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	111, 403
BspCNI	CTCAG	2 cut(s)	68, 411
BspLI	GGNNCC	5 cut(s)	25, 103, 182, 218, 426
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	45
BspT107I	GGYRCC	2 cut(s)	23, 424
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	2 cut(s)	307, 357
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	159, 405
BssMI	GATC	3 cut(s)	8, 50, 130
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	159, 405
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	4 cut(s)	116, 127, 279, 445
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	3 cut(s)	190, 298, 321
BstDEI	CTNAG	2 cut(s)	55, 398
BstKTI	GATC	3 cut(s)	11, 53, 133
BstMAI	GTCTC	2 cut(s)	82, 401
BstMBI	GATC	3 cut(s)	8, 50, 130
BstMWI	GCNNNNNNNGC	2 cut(s)	189, 349
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	2 cut(s)	8, 50
BstYI	RGATCY	2 cut(s)	8, 50
Bsu36I	CCTNAGG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	111, 403
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	190, 298, 321
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	3 cut(s)	62, 201, 402
CpoI	CGGWCCG	1 cut(s)	201
CseI	GACGC	1 cut(s)	181
CsiI	ACCWGGT	1 cut(s)	420
Csp6I	GTAC	1 cut(s)	425
CspI	CGGWCCG	1 cut(s)	201
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	2 cut(s)	55, 398
DpnI	GATC	3 cut(s)	10, 52, 132
DpnII	GATC	3 cut(s)	8, 50, 130
EaeI	YGGCCR	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	159, 405
Eco47I	GGWCC	2 cut(s)	62, 201
Eco81I	CCTNAGG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	159, 405
ErhI	CCWWGG	2 cut(s)	159, 405
Esp3I	CGTCTC	1 cut(s)	401
FaiI	YATR	2 cut(s)	375, 484
Fnu4HI	GCNGC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	120, 134
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	111, 403
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	1 cut(s)	181
Hin1I	GRCGYC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	48, 66
Hpy188III	TCNNGA	4 cut(s)	35, 57, 76, 146
Hpy8I	GTNNAC	1 cut(s)	367
Hpy99I	CGWCG	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	379
HpyCH4III	ACNGT	4 cut(s)	116, 127, 279, 445
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	189, 349
HpyF3I	CTNAG	2 cut(s)	55, 398
Hsp92I	GRCGYC	1 cut(s)	192
KpnI	GGTACC	1 cut(s)	428
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	8, 50, 130
LmnI	GCTCC	2 cut(s)	180, 216
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	478
MabI	ACCWGGT	1 cut(s)	420
MaeI	CTAG	2 cut(s)	120, 134
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	3 cut(s)	10, 52, 132
MboI	GATC	3 cut(s)	8, 50, 130
MboII	GAAGA	1 cut(s)	285
MflI	RGATCY	2 cut(s)	8, 50
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	1 cut(s)	38
MluNI	TGGCCA	1 cut(s)	111
MnlI	CCTC	6 cut(s)	11, 53, 64, 238, 247, 375
Mox20I	TGGCCA	1 cut(s)	111
MroNI	GCCGGC	1 cut(s)	188
MroXI	GAANNNNTTC	1 cut(s)	42
MscI	TGGCCA	1 cut(s)	111
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	2 cut(s)	189, 349
NaeI	GCCGGC	1 cut(s)	190
NdeII	GATC	3 cut(s)	8, 50, 130
NgoMIV	GCCGGC	1 cut(s)	188
NlaIV	GGNNCC	5 cut(s)	25, 103, 182, 218, 426
NmuCI	GTSAC	1 cut(s)	412
PctI	GAATGC	1 cut(s)	252
PdiI	GCCGGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	42
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	5 cut(s)	25, 103, 182, 218, 426
PspPI	GGNCC	3 cut(s)	62, 201, 402
PstI	CTGCAG	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	8, 50
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	372
Rsr2I	CGGWCCG	1 cut(s)	201
RsrII	CGGWCCG	1 cut(s)	201
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	3 cut(s)	8, 50, 130
Sau96I	GGNCC	3 cut(s)	62, 201, 402
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	5 cut(s)	64, 83, 230, 239, 426
SexAI	ACCWGGT	1 cut(s)	420
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	2 cut(s)	62, 201
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	2 cut(s)	120, 134
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	2 cut(s)	159, 405
TaaI	ACNGT	4 cut(s)	116, 127, 279, 445
TaqII	GACCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	38
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	60, 471, 476
TspGWI	ACGGA	2 cut(s)	185, 193
TspRI	CASTG	1 cut(s)	448
Van91I	CCANNNNNTGG	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	62, 201
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	120, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.