Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004375

Physical Location & Seq

Genomic Coordinates Forward (+)

26504747 .. 26512260

Gene Structure 7514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGGGCCTCGTTCCTCCCCCTCCAACCGCGGCTGATACGATTCCGAAGCCGAAAGAGGATGAGAAAGTGGATTACTTGAATCTTCCTTGCCCTATTCCCTATGAGGAGATCCACCGTGAAGCTCTCATGTCTTTAAAGCCTGAACTGTTTGAAGGGATGCGCTTCGATTTTACTAAAGGACTCAATCAGAGATTCTCACTCAGTCACAGCGTGTTCATGGGACCTACGGAGATTCCTTCACAATCTCCTGAAACTATTAAAATTCCTACTGCTCACTATGAGTTTGGTGCCAACTTTATAGATCCAAAGTTGATGCTTTTTGGGAGAATGATGACTGATGGAAGGCTTAATGCAAGAGTAAAGTGCGATTTATCTGAGAATCTTACTTTGAAGGCCAATTCTCAGCTTACCAATGAGCCTCACATGTCACATGGCATGGTCAATTTTGATTACAAGGGCAAAGATTACAGGTCACAGTTTCAACTAGGAAATGGTGCATTGTTTGGAGCAAACTACATTCAGAGCGTGACGCCCCATCTGGCTTTGGGTGGTGAAGTGTTCTGGGCTGGTCAGCATCGGAAGTCTGGTATTGGCTATGCTGCTCGGTATAACACAGACAAGATGGTTGCCACAGGGCAAGTCGCTAGTACTGGAATGGTTGCTCTTAGCTATGTACAAAAGGTGTCTGATAAGGTTTCTCTTGCATCAGATTTCATGTACAACTACATGTCAAGAGATGTCACGGCTAGTTTTGGTTATGATTACATTCTTCGACAGTGCCGTCTTAGAGGAAAGATTGATTCCAATGGCACCGTAGCTGCATTTTTGGAAGAGCGACTAAATATGGGTCTTAATTTTGTTCTTTCTGCAGAGATTGATCACAGAAAGAAAGACTACAAATTCGGGTTTGGATTGACTGTCGGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005742 GO:0005743 GO:0005773 GO:0005774 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0022804 GO:0022857 GO:0022884 GO:0030150 GO:0031090 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:1904680 GO:1990542

KEGG Pathways

Metabolic & Signaling

ko05014 map05014

Pfam Domains

Protein Families

Porin_3

Protein Analysis

311

Amino Acids

34.66

Weight (kDa)

7.09

Isoelectric Point (pI)

27.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Porin_3	PF01459	31 - 303	2.4e-67	Eukaryotic porin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Orthologous Genes (Group: OG0004375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50400 AT3G20000 AT3G20000
fragaria_vesca	FvH4_4g11890
malus_domestica	MD04G1030900.v1.1 MD13G1002300.v1.1 MD13G1277300.v1.1
prunus_persica	Prupe.1G180200_v2.0.a1 Prupe.1G350100_v2.0.a1
pyrus_communis	pycom04g02610 pycom13g29500
rosa_chinensis	RchiOBHm_Chr4g0409321 RchiOBHm_Chr4g0447041
rosa_laevigata	RLG00000005610 RLG00000008570
rosa_multiflora	Rmu_sc0014071.1_g000007 Rmu_sc0019356.1_g000004
rosa_roxburghii	Rroxscaffold_5G00353830 Rroxscaffold_5G00387360
rosa_rugosa	Rorug04G0092300 Rorug04G0377400 Rorug04G0377500 Rorug04G0377600
rosa_samantha	Rh4AG155400 Rh4AG438700 Rh4BG153700 Rh4BG447800 Rh4CG164300 Rh4CG464900 Rh4DG148300
rosa_wichuraiana	Rw4G012690 Rw4G037530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	783
AccB1I	GGYRCC	2 cut(s)	290, 812
AccII	CGCG	1 cut(s)	32
AciI	CCGC	3 cut(s)	5, 30, 32
AclWI	GGATC	2 cut(s)	106, 299
AcsI	RAATTY	2 cut(s)	264, 902
AcyI	GRCGYC	1 cut(s)	533
AdeI	CACNNNGTG	1 cut(s)	214
AfaI	GTAC	3 cut(s)	652, 678, 722
AflIII	ACRYGT	2 cut(s)	426, 729
AgsI	TTSAA	4 cut(s)	82, 155, 394, 485
AluBI	AGCT	4 cut(s)	125, 409, 672, 821
AluI	AGCT	4 cut(s)	125, 409, 672, 821
AlwI	GGATC	2 cut(s)	106, 299
AoxI	GGCC	2 cut(s)	7, 396
ApeKI	GCWGC	2 cut(s)	602, 821
ApoI	RAATTY	2 cut(s)	264, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	7, 224
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	224
BanI	GGYRCC	2 cut(s)	290, 812
BbvI	GCAGC	2 cut(s)	589, 808
BccI	CCATC	3 cut(s)	335, 546, 619
BceAI	ACGGC	2 cut(s)	762, 768
BclI	TGATCA	1 cut(s)	880
BfaI	CTAG	3 cut(s)	488, 648, 750
BfmI	CTRYAG	1 cut(s)	870
BisI	GCNGC	3 cut(s)	33, 603, 822
BlsI	GCNGC	3 cut(s)	34, 604, 823
BmcAI	AGTACT	1 cut(s)	652
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	7, 224
BmiI	GGNNCC	3 cut(s)	225, 292, 814
BmsI	GCATC	4 cut(s)	150, 306, 586, 716
BsaHI	GRCGYC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	30
Bse1I	ACTGG	1 cut(s)	658
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	67, 165
BseMII	CTCAG	3 cut(s)	217, 369, 419
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	589, 808
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	9, 398
BshNI	GGYRCC	2 cut(s)	290, 812
BslFI	GGGAC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	9, 398
Bsp1407I	TGTACA	2 cut(s)	676, 720
Bsp143I	GATC	3 cut(s)	111, 304, 880
BspACI	CCGC	3 cut(s)	5, 30, 32
BspANI	GGCC	2 cut(s)	9, 398
BspCNI	CTCAG	3 cut(s)	216, 370, 418
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	3 cut(s)	225, 292, 814
BspMAI	CTGCAG	1 cut(s)	874
BspPI	GGATC	2 cut(s)	106, 299
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	2 cut(s)	290, 812
BsrGI	TGTACA	2 cut(s)	676, 720
BsrI	ACTGG	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	3 cut(s)	111, 304, 880
BssNI	GRCGYC	1 cut(s)	533
Bst4CI	ACNGT	6 cut(s)	119, 150, 480, 780, 817, 922
Bst6I	CTCTTC	1 cut(s)	828
BstACI	GRCGYC	1 cut(s)	533
BstAUI	TGTACA	2 cut(s)	676, 720
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	5 cut(s)	203, 378, 405, 668, 788
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	67, 165
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	3 cut(s)	114, 307, 883
BstMBI	GATC	3 cut(s)	111, 304, 880
BstNSI	RCATGY	2 cut(s)	430, 733
BstSFI	CTRYAG	1 cut(s)	870
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	589, 808
BstX2I	RGATCY	2 cut(s)	111, 304
BstYI	RGATCY	2 cut(s)	111, 304
BsuRI	GGCC	2 cut(s)	9, 398
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	67, 165
BtsIMutI	CAGTG	1 cut(s)	785
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	7, 224
Cfr42I	CCGCGG	1 cut(s)	33
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	3 cut(s)	651, 677, 721
CviAII	CATG	7 cut(s)	130, 220, 427, 434, 439, 718, 730
CviQI	GTAC	3 cut(s)	651, 677, 721
DdeI	CTNAG	5 cut(s)	203, 378, 405, 668, 788
DpnI	GATC	3 cut(s)	113, 306, 882
DpnII	GATC	3 cut(s)	111, 304, 880
DraI	TTTAAA	1 cut(s)	138
DraIII	CACNNNGTG	1 cut(s)	214
DrdI	GACNNNNNNGTC	1 cut(s)	783
DseDI	GACNNNNNNGTC	1 cut(s)	783
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco47I	GGWCC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	224
FaeI	CATG	7 cut(s)	133, 223, 430, 437, 442, 721, 733
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	7 cut(s)	129, 219, 426, 433, 438, 717, 729
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	3 cut(s)	33, 603, 822
FokI	GGATG	2 cut(s)	74, 172
Fsp4HI	GCNGC	3 cut(s)	33, 603, 822
FspBI	CTAG	3 cut(s)	488, 648, 750
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	33, 603, 822
HaeIII	GGCC	2 cut(s)	9, 398
HgaI	GACGC	1 cut(s)	541
HhaI	GCGC	1 cut(s)	165
Hin1I	GRCGYC	1 cut(s)	533
Hin1II	CATG	7 cut(s)	133, 223, 430, 437, 442, 721, 733
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HinfI	GANTC	7 cut(s)	43, 82, 183, 195, 235, 382, 803
HphI	GGTGA	1 cut(s)	566
Hpy188I	TCNGA	7 cut(s)	48, 192, 379, 525, 582, 691, 712
Hpy188III	TCNNGA	2 cut(s)	251, 735
HpyAV	CCTTC	4 cut(s)	149, 249, 339, 388
HpyCH4III	ACNGT	6 cut(s)	119, 150, 480, 780, 817, 922
HpyCH4V	TGCA	5 cut(s)	356, 500, 707, 824, 872
HpyF3I	CTNAG	5 cut(s)	203, 378, 405, 668, 788
Hsp92I	GRCGYC	1 cut(s)	533
Hsp92II	CATG	7 cut(s)	133, 223, 430, 437, 442, 721, 733
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	880
KspI	CCGCGG	1 cut(s)	33
Kzo9I	GATC	3 cut(s)	111, 304, 880
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	9 cut(s)	156, 264, 457, 527, 550, 555, 573, 621, 639
Lsp1109I	GCAGC	2 cut(s)	589, 808
LweI	GCATC	4 cut(s)	150, 306, 586, 716
MaeI	CTAG	3 cut(s)	488, 648, 750
MaeIII	GTNAC	5 cut(s)	206, 429, 474, 529, 742
MalI	GATC	3 cut(s)	113, 306, 882
MboI	GATC	3 cut(s)	111, 304, 880
MboII	GAAGA	3 cut(s)	77, 764, 845
MflI	RGATCY	2 cut(s)	111, 304
MluCI	AATT	5 cut(s)	264, 400, 445, 856, 902
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	7 cut(s)	20, 27, 33, 52, 100, 432, 785
MseI	TTAA	4 cut(s)	137, 261, 351, 855
MspA1I	CMGCKG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	32
NdeII	GATC	3 cut(s)	111, 304, 880
NlaIII	CATG	7 cut(s)	133, 223, 430, 437, 442, 721, 733
NlaIV	GGNNCC	3 cut(s)	225, 292, 814
NmuCI	GTSAC	5 cut(s)	206, 429, 474, 529, 742
NspI	RCATGY	2 cut(s)	430, 733
PciI	ACATGT	2 cut(s)	426, 729
PciSI	GCTCTTC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	1 cut(s)	781
PfeI	GAWTC	6 cut(s)	43, 82, 195, 235, 382, 803
PkrI	GCNGC	3 cut(s)	34, 604, 823
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	224
PscI	ACATGT	2 cut(s)	426, 729
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	225, 292, 814
PspPI	GGNCC	2 cut(s)	7, 224
PspPPI	RGGWCCY	1 cut(s)	224
PstI	CTGCAG	1 cut(s)	874
PsuI	RGATCY	2 cut(s)	111, 304
RsaI	GTAC	3 cut(s)	652, 678, 722
RsaNI	GTAC	3 cut(s)	651, 677, 721
SacII	CCGCGG	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	137, 261, 351, 855
SatI	GCNGC	3 cut(s)	33, 603, 822
Sau3AI	GATC	3 cut(s)	111, 304, 880
Sau96I	GGNCC	2 cut(s)	7, 224
ScaI	AGTACT	1 cut(s)	652
SchI	GAGTC	1 cut(s)	177
SetI	ASST	8 cut(s)	127, 229, 411, 476, 674, 687, 699, 823
SfaNI	GCATC	4 cut(s)	150, 306, 586, 716
SfcI	CTRYAG	1 cut(s)	870
Sfr303I	CCGCGG	1 cut(s)	33
SgrBI	CCGCGG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	5 cut(s)	264, 400, 445, 856, 902
SsiI	CCGC	3 cut(s)	5, 30, 32
SspMI	CTAG	3 cut(s)	488, 648, 750
TaaI	ACNGT	6 cut(s)	119, 150, 480, 780, 817, 922
TaqI	TCGA	2 cut(s)	168, 775
TasI	AATT	5 cut(s)	264, 400, 445, 856, 902
TatI	WGTACW	3 cut(s)	650, 676, 720
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	6 cut(s)	43, 82, 195, 235, 382, 803
Tru1I	TTAA	4 cut(s)	137, 261, 351, 855
Tru9I	TTAA	4 cut(s)	137, 261, 351, 855
TscAI	CASTG	1 cut(s)	785
TseFI	GTSAC	5 cut(s)	206, 429, 474, 529, 742
TseI	GCWGC	2 cut(s)	602, 821
Tsp45I	GTSAC	5 cut(s)	206, 429, 474, 529, 742
TspDTI	ATGAA	2 cut(s)	208, 706
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	264, 902
XceI	RCATGY	2 cut(s)	430, 733
XspI	CTAG	3 cut(s)	488, 648, 750
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.