Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003953

Physical Location & Seq

Genomic Coordinates Reverse (-)

1954050 .. 1955827

Gene Structure 1778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGAACCCCTTGCTGAAGGTGCTTCTGCCAATCTAAATGTCACTTTGGACAGATTCAGTGCTCTTCCACGTGAAGTTGCTCATCACATTTTGTCATTTCTTCCCATATCCGACATCACTCGAGTTGGCATGTTATCCCAAGAATGCAGAGCATTTTATCTGTCAACTCCCACATTGAACTTCACTGAATTCCCTTCGGAGTCCACTCGCACCTTCAACAGCCGTTTGGAGTTGATGGCTTCCTTGGACAAGTTCTTCATACATCGCCACCATAACAAGGTACAAAGCTTTTCTCTGGATTGGGTTTCTAAGTACGAACTTGGGGAAACAGATATTGAAAAGTGCTGCTCTGTTGAAAAATCTAGGGTTTTGGGTTGGATTGAAAATGCACTGACTTACAACGTTGAAAAGCTTGATTTTTTCTTTCTTACTGTGATGCCAACCGTAGAAGATATTATTAGCGAGACCCAGATAGATTTTCCTTCATCTGTGTTTGTTTCTGGGTCTCTGAGGTCTCTCTCTCTATTTATGAAGTGTGCAACTCTTAAAGCTTCCACATTTTCTGCATCTTCTATCTGTAATCTGGTTTTTCTGAAGCTGAGAAGGGTTACCATGGAAGATGATGAGGGTTTTTGCAAATGGATCTGCTTCTGCTGCAGAAATATTAAGGAGTTGAGGCTCGAGTGTGTGATAGGGTTGCGAAAAATCGACATTGAGAGTTCGTCTTTGGAATCATTTGGTCTTGAGTTTCCCTCTTGTTATGATCTTTGCCATGTTAAAATCTCTGGTGAGAAAGTTGAAGATTTGCATATAAATTGGAAATTTAATGCTCCATTGCCTCGGACGAATTCGTTGGAGATTTTCTCTCCAAATCTTAAGCGTTTGAATTGGGTGGGTTATATGATGAATCACCAGAATCTGGGGGAGTTGAATTGTTTGGAAGAAGTTCAGATTTCTCTCATGGCTAATGGAGTAGATGATCCTGAAAGCAAAACACATGAGTTCCTCTCTAGCATTCGCAGTGCTAAAACACTCCGTATTGATCAAGGGACTGCAAAGAATCTGTTCAAGGATGGCAACACACCCCCAATATTACATGAACTCTGTTGCTTGCATGTGACTATTTGGAGTGGTATCGATGACAAGGTTGTCCCGGCGCTGGCCTCACTTTTTAAAGGACTCCCTAATTTGACTACTTTGGAATTGACAGTATCATCTGATCAGCTACGCTTCTTCTTTTGCAGTGCAAATGCGGCTACTGTAAGTGAAAATCTACGTTCTCTCCAACATGCAGAGCGATATTGGGAACGCCAGCACCTGGAGTTTGTTTCTCAGTTGAAGTATGTAACCATAGAGCTTACTAACGGGTCTAATGGATTTGTGCTTGCAAAGTATCTGCTTGAACGTGCTCAGAATTTGGAGGAAATGCTTGTGATTTGCCTGCCCAATCAATGGAATTTCGCAAGGAAGTTGAGGAGCAGTCGGATTATTTCTTCCAATGCTGCAGTTGGCTATCTGGAAAAAAGTGGGGGTCGTACAGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

516

Amino Acids

58.48

Weight (kDa)

5.96

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003953)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g05280 FvH4_6g19053 FvH4_6g19370 FvH4_6g22710 FvH4_6g22710 FvH4_6g33902 FvH4_7g12363
malus_domestica	MD14G1025800.v1.1
pyrus_communis	pycom14g02500
rosa_chinensis	RchiOBHm_Chr3g0481121
rosa_laevigata	RLG00000023419 RLG00000023953
rosa_multiflora	Rmu_sc0001551.1_g000014 Rmu_sc0001551.1_g000017
rosa_roxburghii	Rroxscaffold_6G00400620 Rroxscaffold_6G00407510
rosa_rugosa	Rorug03G0138200 Rorug03G0138500 Rorug03G0138600
rosa_samantha	Rh3AG188300 Rh3AG188400 Rh3AG240700 Rh3AG316900 Rh3BG217200 Rh3BG217400 Rh3BG217600 Rh3BG276400 Rh3CG213300 Rh3CG213500 Rh3DG267800 Rh7DG163400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1148
AccB7I	CCANNNNNTGG	3 cut(s)	919, 1318, 1452
AciI	CCGC	1 cut(s)	1253
AclI	AACGTT	1 cut(s)	402
AclWI	GGATC	2 cut(s)	650, 974
AcsI	RAATTY	5 cut(s)	188, 821, 847, 1414, 1456
AcuI	CTGAAG	2 cut(s)	36, 614
AcvI	CACGTG	1 cut(s)	71
AfaI	GTAC	3 cut(s)	282, 314, 1537
AfiI	CCNNNNNNNGG	5 cut(s)	277, 919, 1159, 1318, 1452
AflII	CTTAAG	1 cut(s)	875
AjnI	CCWGG	1 cut(s)	1317
AluBI	AGCT	6 cut(s)	288, 412, 551, 598, 1225, 1357
AluI	AGCT	6 cut(s)	288, 412, 551, 598, 1225, 1357
Alw21I	GWGCWC	2 cut(s)	64, 1411
Alw26I	GTCTC	3 cut(s)	458, 510, 519
AlwI	GGATC	2 cut(s)	650, 974
AlwNI	CAGNNNCTG	2 cut(s)	919, 1318
Ama87I	CYCGRG	2 cut(s)	120, 680
AoxI	GGCC	1 cut(s)	1161
ApeKI	GCWGC	3 cut(s)	345, 654, 1502
ApoI	RAATTY	5 cut(s)	188, 821, 847, 1414, 1456
Asp700I	GAANNNNTTC	2 cut(s)	945, 1064
AspLEI	GCGC	1 cut(s)	1159
AsuC2I	CCSGG	1 cut(s)	1154
AsuHPI	GGTGA	2 cut(s)	800, 902
AvaI	CYCGRG	2 cut(s)	120, 680
BbrPI	CACGTG	1 cut(s)	71
Bbv12I	GWGCWC	2 cut(s)	64, 1411
BbvI	GCAGC	3 cut(s)	332, 641, 1489
BccI	CCATC	2 cut(s)	229, 1067
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	1319
BclI	TGATCA	2 cut(s)	1042, 1219
BcnI	CCSGG	1 cut(s)	1154
BcoDI	GTCTC	3 cut(s)	458, 510, 519
BfaI	CTAG	2 cut(s)	363, 1011
BfmI	CTRYAG	2 cut(s)	655, 1503
BfoI	RGCGCY	1 cut(s)	1160
BfrI	CTTAAG	1 cut(s)	875
BisI	GCNGC	4 cut(s)	346, 655, 1254, 1503
BlsI	GCNGC	4 cut(s)	347, 656, 1255, 1504
Bme1390I	CCNGG	2 cut(s)	1154, 1319
BmeT110I	CYCGRG	2 cut(s)	120, 680
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	1154, 1319
BmsI	GCATC	2 cut(s)	426, 575
BplI	GAGNNNNNCTC	6 cut(s)	737, 769, 848, 880, 992, 1024
BpmI	CTGGAG	1 cut(s)	1340
BpuEI	CTTGAG	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	1154
Bsa29I	ATCGAT	1 cut(s)	1137
BsaAI	YACGTR	1 cut(s)	71
BsaI	GGTCTC	3 cut(s)	458, 510, 519
BsaJI	CCNNGG	3 cut(s)	243, 612, 839
BsaXI	ACNNNNNCTCC	2 cut(s)	1266, 1296
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 919, 1159, 1318, 1452
Bse3DI	GCAATG	1 cut(s)	833
BseBI	CCWGG	1 cut(s)	1319
BseCI	ATCGAT	1 cut(s)	1137
BseDI	CCNNGG	3 cut(s)	243, 612, 839
BseGI	GGATG	1 cut(s)	1078
BseLI	CCNNNNNNNGG	5 cut(s)	277, 919, 1159, 1318, 1452
BseMI	GCAATG	1 cut(s)	833
BseMII	CTCAG	4 cut(s)	500, 590, 1346, 1424
BseRI	GAGGAG	1 cut(s)	1489
BseXI	GCAGC	3 cut(s)	332, 641, 1489
BshFI	GGCC	1 cut(s)	1163
BshVI	ATCGAT	1 cut(s)	1137
BsiHKAI	GWGCWC	2 cut(s)	64, 1411
BsiHKCI	CYCGRG	2 cut(s)	120, 680
BsiSI	CCGG	1 cut(s)	1154
BslFI	GGGAC	2 cut(s)	1063, 1136
BslI	CCNNNNNNNGG	5 cut(s)	277, 919, 1159, 1318, 1452
BsmAI	GTCTC	3 cut(s)	458, 510, 519
BsmFI	GGGAC	2 cut(s)	1063, 1136
BsmI	GAATGC	2 cut(s)	149, 1014
BsnI	GGCC	1 cut(s)	1163
Bso31I	GGTCTC	3 cut(s)	458, 510, 519
BsoBI	CYCGRG	2 cut(s)	120, 680
Bsp1286I	GDGCHC	2 cut(s)	64, 1411
Bsp143I	GATC	5 cut(s)	642, 763, 979, 1042, 1219
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	1 cut(s)	1253
BspANI	GGCC	1 cut(s)	1163
BspCNI	CTCAG	4 cut(s)	501, 591, 1345, 1423
BspDI	ATCGAT	1 cut(s)	1137
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	659, 1507
BspPI	GGATC	2 cut(s)	650, 974
BspQI	GCTCTTC	1 cut(s)	69
BspTI	CTTAAG	1 cut(s)	875
BspTNI	GGTCTC	3 cut(s)	458, 510, 519
BsrDI	GCAATG	1 cut(s)	833
BssECI	CCNNGG	3 cut(s)	243, 612, 839
BssMI	GATC	5 cut(s)	642, 763, 979, 1042, 1219
BssT1I	CCWWGG	2 cut(s)	243, 612
Bst2UI	CCWGG	1 cut(s)	1319
Bst4CI	ACNGT	4 cut(s)	433, 445, 1210, 1261
Bst6I	CTCTTC	1 cut(s)	69
BstAFI	CTTAAG	1 cut(s)	875
BstBAI	YACGTR	1 cut(s)	71
BstC8I	GCNNGC	5 cut(s)	1112, 1161, 1313, 1386, 1442
BstDEI	CTNAG	5 cut(s)	309, 509, 599, 1332, 1410
BstDSI	CCRYGG	1 cut(s)	612
BstEII	GGTNACC	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	1078
BstH2I	RGCGCY	1 cut(s)	1160
BstHHI	GCGC	1 cut(s)	1159
BstKTI	GATC	5 cut(s)	645, 766, 982, 1045, 1222
BstMAI	GTCTC	3 cut(s)	458, 510, 519
BstMBI	GATC	5 cut(s)	642, 763, 979, 1042, 1219
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 654, 1253
BstNI	CCWGG	1 cut(s)	1319
BstNSI	RCATGY	3 cut(s)	133, 1118, 1292
BstPI	GGTNACC	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	1152, 1317
BstSFI	CTRYAG	2 cut(s)	655, 1503
BstV1I	GCAGC	3 cut(s)	332, 641, 1489
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
Bsu15I	ATCGAT	1 cut(s)	1137
BsuRI	GGCC	1 cut(s)	1163
BsuTUI	ATCGAT	1 cut(s)	1137
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	1078
BtsI	GCAGTG	2 cut(s)	1027, 1249
BtsIMutI	CAGTG	5 cut(s)	64, 183, 389, 1027, 1249
Cac8I	GCNNGC	5 cut(s)	1112, 1161, 1313, 1386, 1442
CaiI	CAGNNNCTG	2 cut(s)	919, 1318
CfoI	GCGC	1 cut(s)	1159
ClaI	ATCGAT	1 cut(s)	1137
Csp6I	GTAC	3 cut(s)	281, 313, 1536
CviAII	CATG	8 cut(s)	130, 613, 773, 961, 998, 1097, 1115, 1289
CviQI	GTAC	3 cut(s)	281, 313, 1536
DdeI	CTNAG	5 cut(s)	309, 509, 599, 1332, 1410
DpnI	GATC	5 cut(s)	644, 765, 981, 1044, 1221
DpnII	GATC	5 cut(s)	642, 763, 979, 1042, 1219
DraI	TTTAAA	1 cut(s)	1174
DrdI	GACNNNNNNGTC	1 cut(s)	1148
DseDI	GACNNNNNNGTC	1 cut(s)	1148
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	243, 612
Eco31I	GGTCTC	3 cut(s)	458, 510, 519
Eco57I	CTGAAG	2 cut(s)	36, 614
Eco72I	CACGTG	1 cut(s)	71
Eco88I	CYCGRG	2 cut(s)	120, 680
Eco91I	GGTNACC	1 cut(s)	607
EcoO65I	GGTNACC	1 cut(s)	607
EcoRI	GAATTC	2 cut(s)	188, 847
EcoRII	CCWGG	1 cut(s)	1317
EcoT14I	CCWWGG	2 cut(s)	243, 612
ErhI	CCWWGG	2 cut(s)	243, 612
FaeI	CATG	8 cut(s)	133, 616, 776, 964, 1001, 1100, 1118, 1292
FaqI	GGGAC	2 cut(s)	1063, 1136
FatI	CATG	8 cut(s)	129, 612, 772, 960, 997, 1096, 1114, 1288
FbaI	TGATCA	2 cut(s)	1042, 1219
Fnu4HI	GCNGC	4 cut(s)	346, 655, 1254, 1503
FokI	GGATG	1 cut(s)	1085
Fsp4HI	GCNGC	4 cut(s)	346, 655, 1254, 1503
FspBI	CTAG	2 cut(s)	363, 1011
GlaI	GCGC	1 cut(s)	1158
GluI	GCNGC	4 cut(s)	346, 655, 1254, 1503
GsuI	CTGGAG	1 cut(s)	1340
HaeII	RGCGCY	1 cut(s)	1160
HaeIII	GGCC	1 cut(s)	1163
HapII	CCGG	1 cut(s)	1154
HhaI	GCGC	1 cut(s)	1159
Hin1II	CATG	8 cut(s)	133, 616, 776, 964, 1001, 1100, 1118, 1292
Hin6I	GCGC	1 cut(s)	1157
HinP1I	GCGC	1 cut(s)	1157
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	3 cut(s)	286, 410, 549
HinfI	GANTC	7 cut(s)	54, 200, 731, 907, 916, 1060, 1179
HpaII	CCGG	1 cut(s)	1154
HphI	GGTGA	2 cut(s)	800, 902
Hpy166II	GTNNAC	2 cut(s)	165, 204
Hpy188I	TCNGA	9 cut(s)	112, 199, 510, 594, 843, 951, 1219, 1413, 1485
Hpy188III	TCNNGA	4 cut(s)	296, 743, 983, 1517
Hpy8I	GTNNAC	2 cut(s)	165, 204
HpyAV	CCTTC	5 cut(s)	11, 204, 223, 492, 597
HpyCH4III	ACNGT	4 cut(s)	433, 445, 1210, 1261
HpyCH4IV	ACGT	4 cut(s)	70, 402, 1276, 1405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 654, 1253
HpyF3I	CTNAG	5 cut(s)	309, 509, 599, 1332, 1410
HpySE526I	ACGT	4 cut(s)	70, 402, 1276, 1405
Hsp92II	CATG	8 cut(s)	133, 616, 776, 964, 1001, 1100, 1118, 1292
HspAI	GCGC	1 cut(s)	1157
Ksp22I	TGATCA	2 cut(s)	1042, 1219
Kzo9I	GATC	5 cut(s)	642, 763, 979, 1042, 1219
LguI	GCTCTTC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	835, 1476
Lsp1109I	GCAGC	3 cut(s)	332, 641, 1489
LweI	GCATC	2 cut(s)	426, 575
MaeI	CTAG	2 cut(s)	363, 1011
MaeII	ACGT	4 cut(s)	70, 402, 1276, 1405
MaeIII	GTNAC	4 cut(s)	40, 607, 1117, 1345
MalI	GATC	5 cut(s)	644, 765, 981, 1044, 1221
MboI	GATC	5 cut(s)	642, 763, 979, 1042, 1219
MflI	RGATCY	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	64, 1411
MlyI	GAGTC	2 cut(s)	209, 1173
MmeI	TCCRAC	5 cut(s)	135, 356, 834, 1309, 1463
MnlI	CCTC	9 cut(s)	504, 619, 669, 763, 849, 1016, 1174, 1414, 1467
MroXI	GAANNNNTTC	2 cut(s)	945, 1064
MseI	TTAA	6 cut(s)	546, 666, 777, 825, 876, 1173
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	1 cut(s)	1154
MspR9I	CCNGG	2 cut(s)	1154, 1319
Mva1269I	GAATGC	2 cut(s)	149, 1014
MvaI	CCWGG	1 cut(s)	1319
MwoI	GCNNNNNNNGC	3 cut(s)	20, 654, 1253
NciI	CCSGG	1 cut(s)	1154
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	5 cut(s)	642, 763, 979, 1042, 1219
NlaIII	CATG	8 cut(s)	133, 616, 776, 964, 1001, 1100, 1118, 1292
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	40, 1117
NspI	RCATGY	3 cut(s)	133, 1118, 1292
PaeR7I	CTCGAG	2 cut(s)	120, 680
PciSI	GCTCTTC	1 cut(s)	69
PctI	GAATGC	2 cut(s)	149, 1014
PdmI	GAANNNNTTC	2 cut(s)	945, 1064
PfeI	GAWTC	5 cut(s)	54, 731, 907, 916, 1060
PflMI	CCANNNNNTGG	3 cut(s)	919, 1318, 1452
PkrI	GCNGC	4 cut(s)	347, 656, 1255, 1504
PleI	GAGTC	2 cut(s)	208, 1173
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
PpsI	GAGTC	2 cut(s)	208, 1173
Ppu21I	YACGTR	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	1317
PspCI	CACGTG	1 cut(s)	71
PspEI	GGTNACC	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	1317
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	2 cut(s)	120, 680
PstI	CTGCAG	2 cut(s)	659, 1507
PstNI	CAGNNNCTG	2 cut(s)	919, 1318
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	3 cut(s)	282, 314, 1537
RsaNI	GTAC	3 cut(s)	281, 313, 1536
SapI	GCTCTTC	1 cut(s)	69
SaqAI	TTAA	6 cut(s)	546, 666, 777, 825, 876, 1173
SatI	GCNGC	4 cut(s)	346, 655, 1254, 1503
Sau3AI	GATC	5 cut(s)	642, 763, 979, 1042, 1219
SchI	GAGTC	2 cut(s)	209, 1173
ScrFI	CCNGG	2 cut(s)	1154, 1319
SduI	GDGCHC	2 cut(s)	64, 1411
SfaNI	GCATC	2 cut(s)	426, 575
SfcI	CTRYAG	2 cut(s)	655, 1503
Sfr274I	CTCGAG	2 cut(s)	120, 680
SlaI	CTCGAG	2 cut(s)	120, 680
SmlI	CTYRAG	4 cut(s)	120, 680, 743, 875
SmoI	CTYRAG	4 cut(s)	120, 680, 743, 875
SsiI	CCGC	1 cut(s)	1253
SspI	AATATT	2 cut(s)	664, 1092
SspMI	CTAG	2 cut(s)	363, 1011
StyD4I	CCNGG	2 cut(s)	1152, 1317
StyI	CCWWGG	2 cut(s)	243, 612
TaaI	ACNGT	4 cut(s)	433, 445, 1210, 1261
TaiI	ACGT	4 cut(s)	73, 405, 1279, 1408
TaqI	TCGA	4 cut(s)	121, 681, 708, 1137
TauI	GCSGC	1 cut(s)	1256
TfiI	GAWTC	5 cut(s)	54, 731, 907, 916, 1060
Tru1I	TTAA	6 cut(s)	546, 666, 777, 825, 876, 1173
Tru9I	TTAA	6 cut(s)	546, 666, 777, 825, 876, 1173
TscAI	CASTG	5 cut(s)	64, 190, 396, 1027, 1249
TseFI	GTSAC	2 cut(s)	40, 1117
TseI	GCWGC	3 cut(s)	345, 654, 1502
Tsp45I	GTSAC	2 cut(s)	40, 1117
TspDTI	ATGAA	5 cut(s)	247, 474, 545, 920, 1113
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	5 cut(s)	64, 190, 396, 1027, 1249
Van91I	CCANNNNNTGG	3 cut(s)	919, 1318, 1452
Vha464I	CTTAAG	1 cut(s)	875
XapI	RAATTY	5 cut(s)	188, 821, 847, 1414, 1456
XceI	RCATGY	3 cut(s)	133, 1118, 1292
XhoI	CTCGAG	2 cut(s)	120, 680
XmnI	GAANNNNTTC	2 cut(s)	945, 1064
XspI	CTAG	2 cut(s)	363, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.