pycom14g02860

mRNA-decapping enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0002391
Physical Location & Seq
Forward (+)
2173585 .. 2178153
4569 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1125 bp
ATGTCTCAGACGGGGAAATTGATGCCGAATCTCGATCAGCAGAGCACCAAAGTGCTCAATCTCACGGTGCTGCAGAGAGAGGACTGGTTGATCGATCCCTTCATCGAAGAGATTCTGATTACGGCCGCCCACGTCACCTTCTATGAATTTAACATCGAGAGCAATCAATGGAGTCGCAAGGATGTTGAAGGGTCTCTCTTTGTTGTTAAAAGGAATACTCAACCGCGTTTCCAGTTCATCGTTATGAATCGGCGCAATACTGATAACCTAGTGGAGAATGTCTTGGGAGATTTTGAGTATGAAGTTCAAGTTCCATATTTATTGTATAGAAATGCATCCCAAGAAGTTAACGGCATTTGGTTTTATAACGCACGTGAATGTGAGGAAGTTGCAAATCTCTTTACTAGGATCCTGAATGCATACTCAAAGGTTCCACCAAAGTCCAAAGTGGCTTCAAGCAAAAGTGAGTTTGAGGAACTTGAAGCAGTCCCATCCATGTTGGTCATGGAAGGGCCGTTGGAGCCATCATTGAATCCCCCTACTGCCGCTGAGGCGCCTGAAGATTCTTCCTTTATAAGCTACCTGGCAGCTATGAATATTGGAAATAAGGCTTCAAATGCAACAAATTCAAGACTGCCCTATCAGTCTACTGGAACTGTTCCCACGCCTTCTTATGCACCCAGTGCCGTTTCACCCCCTGCACCAACTCCACAAATACCAACCCATTCCCATTCAGTCCCATCTACACCAACCCCCCTACATGGCTCCTCTGATCGATCCACCAGCAACAATCGGGTCGCTAATCTTATAAAGCCCTCTTCTTTCTTCCCTCTCCCTGTTTCCTCACCTCCTTTGGTCATACCACCTACCTCTTCATCTGTGCCATCTGCTGCTGTACTTCATCCACCCCTGAATCTGCAACGCCCTTATGGCACCCCAATGCTTCAACCCTTTCCACCACCAACACCCCCACCATCTTTAACTCCCAATTCTGCTCCTCCTGCTCCCAGTGATGGGCCTCTTATTAGCAGAGAAAAAGTTCGAGAGGCACTTGTAATGCTTGTTCAGGACGATCAATTCATCGACATGTTATACCAAGCATTGCAGAAAGTGCACCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DCP1

Protein Analysis

375

Amino Acids

41.3

Weight (kDa)

5.44

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCP1 PF06058 18 - 135 5.4e-43 Dcp1-like decapping family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 366, 575, 809
AccB1I GGYRCC 2 cut(s) 553, 932
AccI GTMKAC 1 cut(s) 647
AccII CGCG 1 cut(s) 226
AciI CCGC 3 cut(s) 126, 224, 546
AclWI GGATC 4 cut(s) 89, 403, 416, 771
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 2 cut(s) 146, 625
AcuI CTGAAG 1 cut(s) 579
AcvI CACGTG 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 554
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 1 cut(s) 897
AfiI CCNNNNNNNGG 3 cut(s) 761, 1013, 1014
AflIII ACRYGT 1 cut(s) 1086
AgsI TTSAA 8 cut(s) 188, 308, 456, 482, 532, 615, 630, 947
AjiI CACGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 582
AleI CACNNNNGTG 1 cut(s) 50
AluBI AGCT 2 cut(s) 579, 590
AluI AGCT 2 cut(s) 579, 590
Alw21I GWGCWC 3 cut(s) 47, 57, 1116
Alw26I GTCTC 2 cut(s) 9, 198
Alw44I GTGCAC 1 cut(s) 1112
AlwI GGATC 4 cut(s) 89, 403, 416, 771
AoxI GGCC 3 cut(s) 123, 512, 1016
ApaLI GTGCAC 1 cut(s) 1112
ApeKI GCWGC 3 cut(s) 70, 587, 890
ApoI RAATTY 2 cut(s) 146, 625
Asp700I GAANNNNTTC 2 cut(s) 111, 1038
AspLEI GCGC 2 cut(s) 255, 556
AspS9I GGNCC 2 cut(s) 512, 1016
AsuHPI GGTGA 3 cut(s) 127, 684, 837
BaeGI GKGCMC 1 cut(s) 1116
BamHI GGATCC 1 cut(s) 408
BanI GGYRCC 2 cut(s) 553, 932
BbrPI CACGTG 1 cut(s) 374
Bbv12I GWGCWC 3 cut(s) 47, 57, 1116
BbvCI CCTCAGC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 57, 599, 877
BccI CCATC 6 cut(s) 499, 532, 748, 892, 982, 1007
BceAI ACGGC 4 cut(s) 138, 367, 499, 671
BciT130I CCWGG 1 cut(s) 584
BcoDI GTCTC 2 cut(s) 9, 198
BfaI CTAG 2 cut(s) 269, 405
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 557
BglI GCCNNNNNGGC 2 cut(s) 551, 930
BisI GCNGC 5 cut(s) 71, 126, 546, 588, 891
BlsI GCNGC 5 cut(s) 72, 127, 547, 589, 892
Bme1390I CCNGG 1 cut(s) 584
BmgBI CACGTC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 512, 1016
BmiI GGNNCC 6 cut(s) 410, 432, 522, 555, 766, 934
BmrFI CCNGG 1 cut(s) 584
BmrI ACTGGG 2 cut(s) 675, 1002
BmsI GCATC 2 cut(s) 12, 344
BmuI ACTGGG 2 cut(s) 675, 1002
Bpu10I CCTNAGC 1 cut(s) 549
Bsa29I ATCGAT 2 cut(s) 93, 775
BsaAI YACGTR 1 cut(s) 374
BsaHI GRCGYC 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 761, 1013, 1014
Bse1I ACTGG 5 cut(s) 89, 232, 655, 681, 1008
Bse3DI GCAATG 1 cut(s) 1100
BseBI CCWGG 1 cut(s) 584
BseCI ATCGAT 2 cut(s) 93, 775
BseGI GGATG 4 cut(s) 187, 335, 491, 901
BseLI CCNNNNNNNGG 3 cut(s) 761, 1013, 1014
BseMI GCAATG 1 cut(s) 1100
BseMII CTCAG 2 cut(s) 20, 540
BseNI ACTGG 5 cut(s) 89, 232, 655, 681, 1008
BseRI GAGGAG 2 cut(s) 757, 987
BseSI GKGCMC 1 cut(s) 1116
BseX3I CGGCCG 1 cut(s) 123
BseXI GCAGC 3 cut(s) 57, 599, 877
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 3 cut(s) 125, 514, 1018
BshNI GGYRCC 2 cut(s) 553, 932
BshVI ATCGAT 2 cut(s) 93, 775
BsiEI CGRYCG 1 cut(s) 126
BsiHKAI GWGCWC 3 cut(s) 47, 57, 1116
BslFI GGGAC 2 cut(s) 473, 722
BslI CCNNNNNNNGG 3 cut(s) 761, 1013, 1014
BsmAI GTCTC 2 cut(s) 9, 198
BsmFI GGGAC 2 cut(s) 473, 722
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 3 cut(s) 125, 514, 1018
Bso31I GGTCTC 1 cut(s) 198
Bsp1286I GDGCHC 3 cut(s) 47, 57, 1116
Bsp143I GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
BspACI CCGC 3 cut(s) 126, 224, 546
BspANI GGCC 3 cut(s) 125, 514, 1018
BspCNI CTCAG 2 cut(s) 19, 541
BspDI ATCGAT 2 cut(s) 93, 775
BspFNI CGCG 1 cut(s) 226
BspLI GGNNCC 6 cut(s) 410, 432, 522, 555, 766, 934
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 4 cut(s) 89, 403, 416, 771
BspT107I GGYRCC 2 cut(s) 553, 932
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 1100
BsrI ACTGG 5 cut(s) 89, 232, 655, 681, 1008
BssMI GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
BssNI GRCGYC 1 cut(s) 554
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 2 cut(s) 67, 658
Bst6I CTCTTC 3 cut(s) 102, 823, 877
BstACI GRCGYC 1 cut(s) 554
BstAPI GCANNNNNTGC 2 cut(s) 683, 1111
BstBAI YACGTR 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 6, 549
BstF5I GGATG 4 cut(s) 187, 335, 491, 901
BstFNI CGCG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 2 cut(s) 255, 556
BstKTI GATC 7 cut(s) 37, 93, 97, 411, 775, 779, 1075
BstMAI GTCTC 2 cut(s) 9, 198
BstMBI GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 7 cut(s) 520, 551, 617, 683, 930, 1001, 1111
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 1090
BstSCI CCNGG 1 cut(s) 582
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 1116
BstUI CGCG 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 57, 599, 877
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BstZI CGGCCG 1 cut(s) 123
Bsu15I ATCGAT 2 cut(s) 93, 775
BsuRI GGCC 3 cut(s) 125, 514, 1018
BsuTUI ATCGAT 2 cut(s) 93, 775
BtrI CACGTC 1 cut(s) 133
BtsCI GGATG 4 cut(s) 187, 335, 491, 901
BtsIMutI CAGTG 2 cut(s) 688, 1015
CfoI GCGC 2 cut(s) 255, 556
Cfr13I GGNCC 2 cut(s) 512, 1016
ClaI ATCGAT 2 cut(s) 93, 775
Csp6I GTAC 1 cut(s) 896
CviAII CATG 5 cut(s) 496, 505, 761, 1087, 1122
CviQI GTAC 1 cut(s) 896
DdeI CTNAG 2 cut(s) 6, 549
DinI GGCGCC 1 cut(s) 555
DpnI GATC 7 cut(s) 36, 92, 96, 410, 774, 778, 1074
DpnII GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 1 cut(s) 123
EagI CGGCCG 1 cut(s) 123
Eam1104I CTCTTC 3 cut(s) 102, 823, 877
EarI CTCTTC 3 cut(s) 102, 823, 877
EclXI CGGCCG 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 198
Eco52I CGGCCG 1 cut(s) 123
Eco57I CTGAAG 1 cut(s) 579
Eco72I CACGTG 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 582
EcoT22I ATGCAT 2 cut(s) 337, 421
EgeI GGCGCC 1 cut(s) 555
EheI GGCGCC 1 cut(s) 555
FaeI CATG 5 cut(s) 499, 508, 764, 1090, 1125
FaqI GGGAC 2 cut(s) 473, 722
FatI CATG 5 cut(s) 495, 504, 760, 1086, 1121
FblI GTMKAC 1 cut(s) 647
Fnu4HI GCNGC 5 cut(s) 71, 126, 546, 588, 891
FokI GGATG 4 cut(s) 194, 322, 478, 888
Fsp4HI GCNGC 5 cut(s) 71, 126, 546, 588, 891
FspBI CTAG 2 cut(s) 269, 405
GlaI GCGC 2 cut(s) 254, 555
GluI GCNGC 5 cut(s) 71, 126, 546, 588, 891
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 3 cut(s) 125, 514, 1018
HhaI GCGC 2 cut(s) 255, 556
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 5 cut(s) 499, 508, 764, 1090, 1125
Hin6I GCGC 2 cut(s) 253, 554
HinP1I GCGC 2 cut(s) 253, 554
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 7 cut(s) 28, 112, 172, 247, 532, 563, 913
HpaI GTTAAC 1 cut(s) 349
HphI GGTGA 3 cut(s) 127, 684, 837
Hpy166II GTNNAC 3 cut(s) 349, 648, 1114
Hpy188I TCNGA 3 cut(s) 9, 117, 772
Hpy188III TCNNGA 6 cut(s) 32, 157, 412, 630, 1043, 1067
Hpy8I GTNNAC 3 cut(s) 349, 648, 1114
HpyAV CCTTC 5 cut(s) 109, 148, 182, 503, 678
HpyCH4III ACNGT 2 cut(s) 67, 658
HpyCH4IV ACGT 2 cut(s) 132, 373
HpyF10VI GCNNNNNNNGC 7 cut(s) 520, 551, 617, 683, 930, 1001, 1111
HpyF3I CTNAG 2 cut(s) 6, 549
HpySE526I ACGT 2 cut(s) 132, 373
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 5 cut(s) 499, 508, 764, 1090, 1125
HspAI GCGC 2 cut(s) 253, 554
KasI GGCGCC 1 cut(s) 553
KspAI GTTAAC 1 cut(s) 349
Kzo9I GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
LmnI GCTCC 4 cut(s) 520, 770, 1000, 1009
Lsp1109I GCAGC 3 cut(s) 57, 599, 877
LweI GCATC 2 cut(s) 12, 344
MaeI CTAG 2 cut(s) 269, 405
MaeII ACGT 2 cut(s) 132, 373
MaeIII GTNAC 1 cut(s) 133
MalI GATC 7 cut(s) 36, 92, 96, 410, 774, 778, 1074
MboI GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
MboII GAAGA 6 cut(s) 119, 558, 572, 810, 817, 864
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 47, 57, 1116
MluCI AATT 5 cut(s) 17, 146, 625, 988, 1076
Mly113I GGCGCC 1 cut(s) 554
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 498
Mph1103I ATGCAT 2 cut(s) 337, 421
MroXI GAANNNNTTC 2 cut(s) 111, 1038
MseI TTAA 4 cut(s) 150, 207, 348, 980
MslI CAYNNNNRTG 5 cut(s) 50, 242, 376, 938, 1085
MspA1I CMGCKG 1 cut(s) 548
MspR9I CCNGG 1 cut(s) 584
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 1 cut(s) 584
MvnI CGCG 1 cut(s) 226
MwoI GCNNNNNNNGC 7 cut(s) 520, 551, 617, 683, 930, 1001, 1111
NarI GGCGCC 1 cut(s) 554
NdeII GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
NlaIII CATG 5 cut(s) 499, 508, 764, 1090, 1125
NlaIV GGNNCC 6 cut(s) 410, 432, 522, 555, 766, 934
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 2 cut(s) 337, 421
NspI RCATGY 1 cut(s) 1090
OliI CACNNNNGTG 1 cut(s) 50
PciI ACATGT 1 cut(s) 1086
PctI GAATGC 1 cut(s) 421
PdmI GAANNNNTTC 2 cut(s) 111, 1038
PfeI GAWTC 6 cut(s) 28, 112, 247, 532, 563, 913
PkrI GCNGC 5 cut(s) 72, 127, 547, 589, 892
PleI GAGTC 1 cut(s) 180
PluTI GGCGCC 1 cut(s) 557
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 1 cut(s) 180
Ppu21I YACGTR 1 cut(s) 374
PscI ACATGT 1 cut(s) 1086
PsiI TTATAA 3 cut(s) 366, 575, 809
Psp6I CCWGG 1 cut(s) 582
PspCI CACGTG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 6 cut(s) 410, 432, 522, 555, 766, 934
PspPI GGNCC 2 cut(s) 512, 1016
PsrI GAACNNNNNNTAC 2 cut(s) 1047, 1079
PstI CTGCAG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 408
RsaI GTAC 1 cut(s) 897
RsaNI GTAC 1 cut(s) 896
RseI CAYNNNNRTG 5 cut(s) 50, 242, 376, 938, 1085
SaqAI TTAA 4 cut(s) 150, 207, 348, 980
SatI GCNGC 5 cut(s) 71, 126, 546, 588, 891
Sau3AI GATC 7 cut(s) 34, 90, 94, 408, 772, 776, 1072
Sau96I GGNCC 2 cut(s) 512, 1016
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 584
SduI GDGCHC 3 cut(s) 47, 57, 1116
SfaNI GCATC 2 cut(s) 12, 344
SfcI CTRYAG 1 cut(s) 71
SfoI GGCGCC 1 cut(s) 555
SmiMI CAYNNNNRTG 5 cut(s) 50, 242, 376, 938, 1085
Sse9I AATT 5 cut(s) 17, 146, 625, 988, 1076
SsiI CCGC 3 cut(s) 126, 224, 546
SspDI GGCGCC 1 cut(s) 553
SspI AATATT 1 cut(s) 598
SspMI CTAG 2 cut(s) 269, 405
StyD4I CCNGG 1 cut(s) 582
TaaI ACNGT 2 cut(s) 67, 658
TaiI ACGT 2 cut(s) 135, 376
TaqI TCGA 7 cut(s) 33, 93, 105, 156, 775, 1042, 1083
TasI AATT 5 cut(s) 17, 146, 625, 988, 1076
TatI WGTACW 1 cut(s) 895
TauI GCSGC 2 cut(s) 128, 548
TfiI GAWTC 6 cut(s) 28, 112, 247, 532, 563, 913
Tru1I TTAA 4 cut(s) 150, 207, 348, 980
Tru9I TTAA 4 cut(s) 150, 207, 348, 980
TscAI CASTG 2 cut(s) 688, 1015
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 3 cut(s) 70, 587, 890
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 9 cut(s) 91, 159, 226, 260, 315, 608, 864, 890, 1069
TspRI CASTG 2 cut(s) 688, 1015
VneI GTGCAC 1 cut(s) 1112
XapI RAATTY 2 cut(s) 146, 625
XceI RCATGY 1 cut(s) 1090
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 647
XmnI GAANNNNTTC 2 cut(s) 111, 1038
XspI CTAG 2 cut(s) 269, 405
Zsp2I ATGCAT 2 cut(s) 337, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.