Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001246

Physical Location & Seq

Genomic Coordinates Forward (+)

3065712 .. 3067458

Gene Structure 1747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGAAACCGCGAAAGATCACTCAGTACAGGGAGAGGCTGGACAGAACACTAGCGTCTCCTAGTCTAACTGATGAGGAAGCATTGAAAACTCTCGTCAAGAATCAGCTGATTCGTTCTAAGGAACATGGAAATGAAGGATGCAATGAGAACGAGGTTGGAGAAAAGACGGCTGAAGTATCCAATTTACTGGACATGTTAAGAAGTGCTTCCTTTGTTGATGACAAGGGATTGAATACCTGTGAGACCACAACCCAACCCGAATGGAAATTAAAACAGGATAATGAAGAGTTCCGTGTGATGTATCGTGAGGGGATTGAAGGCAGTCCATTTCATACATTACTTGCTGAAGGATATGTAGACGGGCCTGTAGATGTCTGTTTATGCATCTCGTGGGAGTCAGACCTTTACAAGAAATGGTGGCCTCAGACTACAGTTCCAACTTTCAAAGTCCTCTCTACCAAATGTTTGCAGAAGGTCCAGATCGGTGAACAGATATCTTTAGTGAGGATGAAAATTCCATGGCCACTTTCACCTAGGGAGGCTGCTGTACACTATTTTATGTTTGAGTATTTCCAAGATCGATCTGATTGTTGTGCTCTTGAAATCGATGTCCGACTTGGAAAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.34

Weight (kDa)

5.28

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001246)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440 AT5G06440
fragaria_vesca	FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770 FvH4_6g20770
malus_domestica	MD12G1043900.v1.1 MD14G1042900.v1.1
prunus_persica	Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1 Prupe.7G091200_v2.0.a1
pyrus_communis	pycom12g03770 pycom12g03780 pycom12g03790 pycom14g03640 pycom14g03650
rosa_chinensis	RchiOBHm_Chr3g0476671
rosa_laevigata	RLG00000001975 RLG00000023756
rosa_multiflora	Rmu_co8489431.1_g000001 Rmu_sc0008241.1_g000019 Rmu_sc0027136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00235830 Rroxscaffold_6G00405100
rosa_rugosa	Rorug03G0156400 Rorug03G0156500 Rorug03G0156600
rosa_samantha	Rh3AG206800 Rh3BG239300 Rh3CG233200 Rh3DG233100 Rh3DG233200
rosa_wichuraiana	Rw3G018820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	13
AciI	CCGC	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	524
AcsI	RAATTY	1 cut(s)	516
AcuI	CTGAAG	2 cut(s)	195, 369
AfaI	GTAC	2 cut(s)	29, 552
AflIII	ACRYGT	1 cut(s)	195
AgsI	TTSAA	5 cut(s)	88, 235, 320, 448, 605
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	2 cut(s)	63, 239
AoxI	GGCC	3 cut(s)	365, 422, 524
ApeKI	GCWGC	1 cut(s)	545
ApoI	RAATTY	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	536
AspS9I	GGNCC	2 cut(s)	365, 478
AsuHPI	GGTGA	2 cut(s)	500, 525
AvaII	GGWCC	1 cut(s)	478
AvrII	CCTAGG	1 cut(s)	536
BalI	TGGCCA	1 cut(s)	526
BauI	CACGAG	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	1 cut(s)	532
BceAI	ACGGC	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	63, 239
BfaI	CTAG	3 cut(s)	53, 63, 537
BfmI	CTRYAG	2 cut(s)	369, 432
BfuI	GTATCC	1 cut(s)	190
BisI	GCNGC	1 cut(s)	546
BlnI	CCTAGG	1 cut(s)	536
BlsI	GCNGC	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	365, 478
BmsI	GCATC	2 cut(s)	131, 396
Bsa29I	ATCGAT	2 cut(s)	583, 609
BsaI	GGTCTC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	521, 536
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	151
BseCI	ATCGAT	2 cut(s)	583, 609
BseDI	CCNNGG	2 cut(s)	521, 536
BseGI	GGATG	2 cut(s)	146, 516
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	38, 440
BseNI	ACTGG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	532
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	3 cut(s)	367, 424, 526
BshVI	ATCGAT	2 cut(s)	583, 609
BsiHKAI	GWGCWC	1 cut(s)	601
BsmAI	GTCTC	2 cut(s)	63, 239
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	3 cut(s)	367, 424, 526
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	18, 483, 580, 584
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	3 cut(s)	367, 424, 526
BspCNI	CTCAG	2 cut(s)	37, 439
BspDI	ATCGAT	2 cut(s)	583, 609
BspFNI	CGCG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	521, 536
BssMI	GATC	4 cut(s)	18, 483, 580, 584
BssSI	CACGAG	1 cut(s)	391
BssT1I	CCWWGG	2 cut(s)	521, 536
Bst2BI	CACGAG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	550
BstDEI	CTNAG	3 cut(s)	24, 120, 426
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	146, 516
BstFNI	CGCG	1 cut(s)	13
BstKTI	GATC	4 cut(s)	21, 486, 583, 587
BstMAI	GTCTC	2 cut(s)	63, 239
BstMBI	GATC	4 cut(s)	18, 483, 580, 584
BstNSI	RCATGY	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	369, 432
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	190
Bsu15I	ATCGAT	2 cut(s)	583, 609
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	367, 424, 526
BsuTUI	ATCGAT	2 cut(s)	583, 609
BtgI	CCRYGG	1 cut(s)	521
BtsCI	GGATG	2 cut(s)	146, 516
Cfr13I	GGNCC	2 cut(s)	365, 478
ClaI	ATCGAT	2 cut(s)	583, 609
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	28, 551
CviAII	CATG	3 cut(s)	128, 196, 522
CviJI	RGCY	7 cut(s)	40, 109, 173, 367, 424, 526, 545
CviKI_1	RGCY	7 cut(s)	40, 109, 173, 367, 424, 526, 545
CviQI	GTAC	2 cut(s)	28, 551
DdeI	CTNAG	3 cut(s)	24, 120, 426
DpnI	GATC	4 cut(s)	20, 485, 582, 586
DpnII	GATC	4 cut(s)	18, 483, 580, 584
EaeI	YGGCCR	1 cut(s)	524
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	521, 536
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	195, 369
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	2 cut(s)	521, 536
EcoT22I	ATGCAT	1 cut(s)	389
ErhI	CCWWGG	2 cut(s)	521, 536
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	3 cut(s)	131, 199, 525
FaiI	YATR	7 cut(s)	129, 197, 336, 357, 385, 523, 563
FalI	AAGNNNNNCTT	2 cut(s)	193, 225
FatI	CATG	3 cut(s)	127, 195, 521
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	546
FokI	GGATG	2 cut(s)	153, 523
Fsp4HI	GCNGC	1 cut(s)	546
FspBI	CTAG	3 cut(s)	53, 63, 537
GluI	GCNGC	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	367, 424, 526
HgaI	GACGC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	131, 199, 525
HinfI	GANTC	3 cut(s)	103, 112, 398
HphI	GGTGA	2 cut(s)	500, 525
Hpy166II	GTNNAC	3 cut(s)	361, 491, 553
Hpy188I	TCNGA	4 cut(s)	403, 429, 589, 617
Hpy188III	TCNNGA	4 cut(s)	100, 308, 481, 602
Hpy8I	GTNNAC	3 cut(s)	361, 491, 553
HpyAV	CCTTC	4 cut(s)	131, 314, 344, 469
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	3 cut(s)	144, 387, 472
HpyF3I	CTNAG	3 cut(s)	24, 120, 426
Hsp92II	CATG	3 cut(s)	131, 199, 525
Kzo9I	GATC	4 cut(s)	18, 483, 580, 584
LpnPI	CCDG	7 cut(s)	16, 26, 176, 253, 263, 381, 494
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	2 cut(s)	131, 396
MaeI	CTAG	3 cut(s)	53, 63, 537
MalI	GATC	4 cut(s)	20, 485, 582, 586
MboI	GATC	4 cut(s)	18, 483, 580, 584
MboII	GAAGA	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	1 cut(s)	526
MluCI	AATT	3 cut(s)	184, 269, 516
MluNI	TGGCCA	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	2 cut(s)	139, 464
MnlI	CCTC	8 cut(s)	30, 70, 148, 304, 435, 464, 501, 535
Mox20I	TGGCCA	1 cut(s)	526
Mph1103I	ATGCAT	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	526
MseI	TTAA	2 cut(s)	200, 272
MslI	CAYNNNNRTG	1 cut(s)	132
Msp20I	TGGCCA	1 cut(s)	526
MspA1I	CMGCKG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	13
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	4 cut(s)	18, 483, 580, 584
NlaIII	CATG	3 cut(s)	131, 199, 525
NsiI	ATGCAT	1 cut(s)	389
NspI	RCATGY	1 cut(s)	199
PciI	ACATGT	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	103, 112
PkrI	GCNGC	1 cut(s)	547
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PscI	ACATGT	1 cut(s)	195
PspPI	GGNCC	2 cut(s)	365, 478
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	2 cut(s)	29, 552
RsaNI	GTAC	2 cut(s)	28, 551
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	200, 272
SatI	GCNGC	1 cut(s)	546
Sau3AI	GATC	4 cut(s)	18, 483, 580, 584
Sau96I	GGNCC	2 cut(s)	365, 478
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	6 cut(s)	111, 159, 242, 408, 480, 538
SfaNI	GCATC	2 cut(s)	131, 396
SfcI	CTRYAG	2 cut(s)	369, 432
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	3 cut(s)	184, 269, 516
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	3 cut(s)	53, 63, 537
StyI	CCWWGG	2 cut(s)	521, 536
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	583, 609
TasI	AATT	3 cut(s)	184, 269, 516
TatI	WGTACW	2 cut(s)	27, 550
TfiI	GAWTC	2 cut(s)	103, 112
Tru1I	TTAA	2 cut(s)	200, 272
Tru9I	TTAA	2 cut(s)	200, 272
TseI	GCWGC	1 cut(s)	545
TspDTI	ATGAA	4 cut(s)	150, 300, 323, 527
TspGWI	ACGGA	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	1 cut(s)	199
XmaJI	CCTAGG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	208
XspI	CTAG	3 cut(s)	53, 63, 537
Zsp2I	ATGCAT	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.