Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001230

Physical Location & Seq

Genomic Coordinates Reverse (-)

15406901 .. 15408575

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTGATTTCGAGCTTTGGAAACGCTTGCCAGCCCCATTTCTGCCTCCGTACTCCTCCGTTTCACTGCATCAGCAAGCAATTTCGGGTGCAATTGAACTTAGTCGCCGCCATGGAAGCTCTTGATGAACCGGAGGGCCTGTTTAAGGACAACAAAAGCAGTAATTCTGCCAATGGAAGAAAAAATGTAAAGATGCCGGTGTGGAAGAAGCTGAATTCCAAAGAACTTGGGATTACTACTTCAATGATCGACAAGCCAACCCGAAAAGTTCTTAATGGGCTAAAGCGAAAGGGATATGAGGTATACCTTGTAGGAGGTTGTGTAAGGGATCTTATATTAAACCGTACGCCAAAGGACTTCGACATAATAACTTCAGCTGAACTGAAGGAGGTGACAAGAACATTTTCTTGGTGTGAAATAGTTGGCAAGCGGTTTCCTATATGTCATGTGCACATTGGTGATAGAGTTATTGAGGTCTCAAGTTTTAGCATCTCCACACGAAAGTCTGGCAGAAACTTAAGTAGTGATTTCGGGAAACCAAATCACTGTGACGACAAGGATTATATGCATTGGAGGAATTGTTCGCAGCGTGACTTTACAATTAATGGGTTGATGTTTGATCCTTATGCAAGGAGAGTGTACGACTACATGGAAGGCATTGAAGATATTAGAAAAGCTAAAGTCCAAACCGTGATACCTGCAAGTACTTCTTTTCGAGAGGATTGTGCTCGCATTCTACGTGCAATAAGAATTGCTGCCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

255

Amino Acids

28.99

Weight (kDa)

9.42

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	101 - 228	4.3e-24	Poly A polymerase head domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT1G28090 AT3G48830 AT5G23690
fragaria_vesca	FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09150 FvH4_5g09270
malus_domestica	MD06G1133100.v1.1 MD14G1149300.v1.1 MD14G1149500.v1.1
prunus_persica	Prupe.5G144000_v2.0.a1 Prupe.5G144300_v2.0.a1
pyrus_communis	pycom06g12450 pycom14g12410
rosa_chinensis	RchiOBHm_Chr3g0469071 RchiOBHm_Chr7g0189011
rosa_laevigata	RLG00000004641 RLG00000024375 RLG00000024379 RLG00000024383 RLG00000024385
rosa_multiflora	Rmu_sc0000302.1_g000052 Rmu_sc0000326.1_g000001 Rmu_sc0007139.1_g000009 Rmu_sc0016080.1_g000004
rosa_roxburghii	Rroxscaffold_3G00265860
rosa_rugosa	Rorug03G0099300 Rorug06G0495400 Rorug06G0495500
rosa_samantha	Rh3AG148200 Rh3AG148500 Rh3BG171000 Rh3BG171100 Rh3BG171500 Rh7AG100100 Rh7BG102400 Rh7CG104000 Rh7DG102100
rosa_wichuraiana	Rw0G010940 Rw0G014560 Rw0G014590 Rw7G008650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	108, 430
AclWI	GGATC	2 cut(s)	336, 614
AcsI	RAATTY	1 cut(s)	214
AcuI	CTGAAG	2 cut(s)	357, 404
AfaI	GTAC	4 cut(s)	52, 346, 641, 706
AfiI	CCNNNNNNNGG	1 cut(s)	145
AflII	CTTAAG	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	97, 243, 662
AjuI	GAANNNNNNNTTGG	2 cut(s)	391, 423
AleI	CACNNNNGTG	1 cut(s)	456
AloI	GAACNNNNNNTCC	2 cut(s)	565, 597
AluBI	AGCT	5 cut(s)	15, 119, 211, 377, 677
AluI	AGCT	5 cut(s)	15, 119, 211, 377, 677
Alw21I	GWGCWC	2 cut(s)	453, 730
Alw26I	GTCTC	1 cut(s)	481
Alw44I	GTGCAC	1 cut(s)	449
AlwI	GGATC	2 cut(s)	336, 614
AoxI	GGCC	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	449
ApeKI	GCWGC	2 cut(s)	586, 755
ApoI	RAATTY	1 cut(s)	214
AseI	ATTAAT	1 cut(s)	603
Asp700I	GAANNNNTTC	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	3 cut(s)	16, 403, 470
BaeGI	GKGCMC	1 cut(s)	453
Bbv12I	GWGCWC	2 cut(s)	453, 730
BbvI	GCAGC	2 cut(s)	598, 742
BceAI	ACGGC	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	481
BfrI	CTTAAG	1 cut(s)	517
BfuAI	ACCTGC	1 cut(s)	706
BisI	GCNGC	3 cut(s)	108, 587, 756
BlsI	GCNGC	3 cut(s)	109, 588, 757
BmcAI	AGTACT	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	136
BmsI	GCATC	3 cut(s)	78, 183, 498
BpuEI	CTTGAG	1 cut(s)	463
BsaAI	YACGTR	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 306, 336, 565, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	453
BseXI	GCAGC	2 cut(s)	598, 742
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	453, 730
BsiSI	CCGG	2 cut(s)	131, 197
BsiWI	CGTACG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	481
Bsp1286I	GDGCHC	2 cut(s)	453, 730
Bsp143I	GATC	3 cut(s)	246, 328, 619
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	2 cut(s)	108, 430
BspANI	GGCC	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	2 cut(s)	336, 614
BspTI	CTTAAG	1 cut(s)	517
BspTNI	GGTCTC	1 cut(s)	481
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	246, 328, 619
BssNAI	GTATAC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	111
Bst1107I	GTATAC	1 cut(s)	304
Bst4CI	ACNGT	3 cut(s)	344, 548, 691
BstAFI	CTTAAG	1 cut(s)	517
BstBAI	YACGTR	1 cut(s)	740
BstC8I	GCNNGC	5 cut(s)	28, 32, 77, 428, 730
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	111
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstKTI	GATC	3 cut(s)	249, 331, 622
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	3 cut(s)	246, 328, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSLI	GKGCMC	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	598, 742
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BstZ17I	GTATAC	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	2 cut(s)	64, 544
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	5 cut(s)	28, 32, 77, 428, 730
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	4 cut(s)	51, 345, 640, 705
CviAII	CATG	3 cut(s)	112, 446, 649
CviJI	RGCY	9 cut(s)	15, 34, 119, 138, 211, 256, 280, 377, 677
CviKI_1	RGCY	9 cut(s)	15, 34, 119, 138, 211, 256, 280, 377, 677
CviQI	GTAC	4 cut(s)	51, 345, 640, 705
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	3 cut(s)	248, 330, 621
DpnII	GATC	3 cut(s)	246, 328, 619
Eco130I	CCWWGG	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	357, 404
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	214
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	3 cut(s)	115, 449, 652
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FatI	CATG	3 cut(s)	111, 445, 648
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	3 cut(s)	108, 587, 756
Fsp4HI	GCNGC	3 cut(s)	108, 587, 756
GluI	GCNGC	3 cut(s)	108, 587, 756
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	131, 197
Hin1II	CATG	3 cut(s)	115, 449, 652
HpaII	CCGG	2 cut(s)	131, 197
HphI	GGTGA	3 cut(s)	16, 403, 470
Hpy166II	GTNNAC	3 cut(s)	304, 451, 640
Hpy188III	TCNNGA	3 cut(s)	122, 532, 716
Hpy8I	GTNNAC	3 cut(s)	304, 451, 640
HpyAV	CCTTC	2 cut(s)	379, 647
HpyCH4III	ACNGT	3 cut(s)	344, 548, 691
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	7 cut(s)	69, 91, 451, 568, 629, 701, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	739
Hsp92II	CATG	3 cut(s)	115, 449, 652
Kzo9I	GATC	3 cut(s)	246, 328, 619
LpnPI	CCDG	6 cut(s)	44, 144, 152, 210, 492, 711
Lsp1109I	GCAGC	2 cut(s)	598, 742
LweI	GCATC	3 cut(s)	78, 183, 498
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	3 cut(s)	391, 548, 590
MalI	GATC	3 cut(s)	248, 330, 621
MboI	GATC	3 cut(s)	246, 328, 619
MboII	GAAGA	3 cut(s)	189, 217, 674
MfeI	CAATTG	1 cut(s)	92
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	453, 730
MluCI	AATT	7 cut(s)	80, 92, 163, 214, 577, 600, 750
MnlI	CCTC	9 cut(s)	56, 66, 127, 292, 308, 382, 466, 567, 712
Mph1103I	ATGCAT	1 cut(s)	570
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	5 cut(s)	144, 273, 338, 518, 603
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	517
MspI	CCGG	2 cut(s)	131, 197
MunI	CAATTG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	732
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	3 cut(s)	246, 328, 619
NlaIII	CATG	3 cut(s)	115, 449, 652
NmuCI	GTSAC	3 cut(s)	391, 548, 590
NsiI	ATGCAT	1 cut(s)	570
OliI	CACNNNNGTG	1 cut(s)	456
PcsI	WCGNNNNNNNCGW	1 cut(s)	736
PctI	GAATGC	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	403
Pfl23II	CGTACG	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	109, 588, 757
Ppu21I	YACGTR	1 cut(s)	740
PshBI	ATTAAT	1 cut(s)	603
PspLI	CGTACG	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	4 cut(s)	52, 346, 641, 706
RsaNI	GTAC	4 cut(s)	51, 345, 640, 705
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	5 cut(s)	144, 273, 338, 518, 603
SatI	GCNGC	3 cut(s)	108, 587, 756
Sau3AI	GATC	3 cut(s)	246, 328, 619
Sau96I	GGNCC	1 cut(s)	136
ScaI	AGTACT	1 cut(s)	706
SduI	GDGCHC	2 cut(s)	453, 730
SfaNI	GCATC	3 cut(s)	78, 183, 498
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	478, 517
SmoI	CTYRAG	2 cut(s)	478, 517
Sse9I	AATT	7 cut(s)	80, 92, 163, 214, 577, 600, 750
SsiI	CCGC	2 cut(s)	108, 430
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	3 cut(s)	344, 548, 691
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	4 cut(s)	11, 249, 360, 715
TasI	AATT	7 cut(s)	80, 92, 163, 214, 577, 600, 750
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	1 cut(s)	110
Tru1I	TTAA	5 cut(s)	144, 273, 338, 518, 603
Tru9I	TTAA	5 cut(s)	144, 273, 338, 518, 603
TscAI	CASTG	2 cut(s)	71, 551
TseFI	GTSAC	3 cut(s)	391, 548, 590
TseI	GCWGC	2 cut(s)	586, 755
Tsp45I	GTSAC	3 cut(s)	391, 548, 590
TspDTI	ATGAA	1 cut(s)	141
TspGWI	ACGGA	2 cut(s)	38, 48
TspRI	CASTG	2 cut(s)	71, 551
Vha464I	CTTAAG	1 cut(s)	517
VneI	GTGCAC	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	603
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	403
ZrmI	AGTACT	1 cut(s)	706
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.