Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003159

Physical Location & Seq

Genomic Coordinates Reverse (-)

16676123 .. 16679955

Gene Structure 3833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAAACGTTTCTTCCAACCGGTAGGGAAAGACGGCTCCGCCAAGAAACCCACACTCGCACCTGCTTCCACAGATAACGACAAAATATCAGCGGAGGACGCCGCCAAGAAACAGCCGCTCAAGTTCATAACGTGGAACGCCAACAGCTTTCTTCTCCGGGTGAAGAACAACTGGCCCGAGTTCACCAAGTTCGTCTCGAGCATCGACCCAGATGTCATTGCGATACAGGAAGTAAGGATGCCTGCCGCTGGTTCAAAGGGTGGACCTAAAAACCCAGGAGAGTTGAAAGATGACACTTCCTCGTCACGTGAAGAAAAGCAGATAATTACGCGTGCCCTGTCAAGCCCACCCTTTGGAGATTATCGTGTCTGGTGGTCTCTTTCAGATTCAAAGTATGCAGGAACTGCATTGTTTGTAAAGAAGTGTTTACAGCCACAAAAAGTATTTTTCAATCTTGACAGAAAAGTTTCAAAGCATGAACCAGATGGCCGGGTCATCCTAGCTGAATTTGAGACATTTAATTTGTTGAATACATATGCACCAAACAATGGTTGGAAGGAGGAAGAAAACTCATTCCCAAGGAGAAGAAAATGGGATAAAAGGATTTTAGAGTTTGTTCTGCAATCTTCGGATAAGCCTCTAATATGGTGCGGTGATCTGAATGTTAGTCATGAAGAGATTGATGTGAGTCATCCAGATTTTTTCAGTGCAGCAAAGGTTAATGGTTATGTTCCTCCAAATAAAGAGGATTGTGGGCAGCCTGGATTTACCTTGAATGAGAGGAAGCGTTTTGGTAACATTTTGAAAGAGGGAAAGTTAATAGATGCATACCGACACCTTCACAAGGAGAAGGACATGGAGCATGGCTTCTCCTGGTCTGGAAACCCCATAGGAAAGTATCGAGGTAAAAGGATGAGAATAGACTACTTCGTTGTTGCAGAGAAACTCAAAGATAGGATTGTTTCATGCGAGATGCATGGGCAAGGGATTGAACTACAAGGGTTTTATGGAAGCGATCATTGTCCAGTCTCCCTCGTGCTTTCGGAAGGAGACACGGCTTCTAAAGAAACTGGATTACCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003906 GO:0004518 GO:0004519 GO:0004520 GO:0004527 GO:0004529 GO:0004536 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006284 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008296 GO:0008309 GO:0008311 GO:0008408 GO:0009507 GO:0009536 GO:0009987 GO:0016787 GO:0016788 GO:0016796 GO:0016889 GO:0016894 GO:0016895 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0090305 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

362

Amino Acids

40.88

Weight (kDa)

8.85

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	43 - 340	1.3e-19	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48425
fragaria_vesca	FvH4_5g07080 FvH4_5g07080 FvH4_5g07080
malus_domestica	MD14G1165700.v1.1
prunus_persica	Prupe.5G159400_v2.0.a1
pyrus_communis	pycom14g13820
rosa_chinensis	RchiOBHm_Chr3g0465631 RchiOBHm_Chr7g0191471
rosa_laevigata	RLG00000004446
rosa_multiflora	Rmu_sc0000550.1_g000024 Rmu_sc0002661.1_g000010 Rmu_sc0003226.1_g000026 Rmu_sc0005734.1_g000004 Rmu_sc0022975.1_g000001 Rmu_sc0031859.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438410 Rroxscaffold_2G00098620 Rroxscaffold_3G00263770 Rroxscaffold_5G00347080 Rroxscaffold_5G00349220 Rroxscaffold_7G00194680
rosa_rugosa	Rorug05G0345200 Rorug06G0510500
rosa_samantha	Rh2AG501600 Rh2CG487600 Rh3BG139700 Rh3BG143200 Rh3DG144500 Rh5BG061000 Rh7AG118600 Rh7BG012100 Rh7BG120600 Rh7CG123400 Rh7DG121500
rosa_wichuraiana	Rw2G044070 Rw7G026230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
AasI	GACNNNNNNGTC	1 cut(s)	212
Acc36I	ACCTGC	1 cut(s)	70
AccB7I	CCANNNNNTGG	2 cut(s)	353, 548
AccBSI	CCGCTC	1 cut(s)	118
AccII	CGCG	1 cut(s)	331
AciI	CCGC	6 cut(s)	39, 92, 102, 116, 246, 651
AclI	AACGTT	1 cut(s)	7
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	506
AcvI	CACGTG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	99
AfiI	CCNNNNNNNGG	4 cut(s)	248, 353, 548, 844
AflIII	ACRYGT	1 cut(s)	329
AgeI	ACCGGT	1 cut(s)	19
AgsI	TTSAA	9 cut(s)	255, 286, 390, 451, 471, 529, 775, 805, 992
AjnI	CCWGG	3 cut(s)	274, 760, 872
AluBI	AGCT	2 cut(s)	147, 503
AluI	AGCT	2 cut(s)	147, 503
Alw26I	GTCTC	5 cut(s)	199, 381, 506, 1033, 1044
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	2 cut(s)	176, 196
AoxI	GGCC	2 cut(s)	173, 487
ApeKI	GCWGC	2 cut(s)	710, 757
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	505, 537
AsiGI	ACCGGT	1 cut(s)	19
Asp700I	GAANNNNTTC	2 cut(s)	8, 466
AspS9I	GGNCC	2 cut(s)	174, 263
AsuC2I	CCSGG	2 cut(s)	158, 491
AsuHPI	GGTGA	3 cut(s)	172, 175, 665
AvaI	CYCGRG	2 cut(s)	176, 196
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	1034
BbrPI	CACGTG	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	722, 769
BccI	CCATC	1 cut(s)	479
BceAI	ACGGC	2 cut(s)	49, 1071
BciT130I	CCWGG	3 cut(s)	276, 762, 874
BcnI	CCSGG	2 cut(s)	158, 491
BcoDI	GTCTC	5 cut(s)	199, 381, 506, 1033, 1044
BfaI	CTAG	1 cut(s)	500
BfuAI	ACCTGC	1 cut(s)	70
BisI	GCNGC	5 cut(s)	102, 116, 246, 711, 758
BlsI	GCNGC	5 cut(s)	103, 117, 247, 712, 759
Bme1390I	CCNGG	5 cut(s)	158, 276, 491, 762, 874
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	176, 196
BmgT120I	GGNCC	2 cut(s)	174, 263
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	5 cut(s)	158, 276, 491, 762, 874
BmsI	GCATC	4 cut(s)	210, 228, 814, 963
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	158, 491
BsaAI	YACGTR	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	274, 578
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	4 cut(s)	248, 353, 548, 844
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	3 cut(s)	176, 1025, 1075
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	3 cut(s)	276, 762, 874
BseDI	CCNNGG	2 cut(s)	274, 578
BseGI	GGATG	4 cut(s)	243, 495, 691, 918
BseLI	CCNNNNNNNGG	4 cut(s)	248, 353, 548, 844
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	3 cut(s)	176, 1025, 1075
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	722, 769
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	175, 489
BshTI	ACCGGT	1 cut(s)	19
BsiHKCI	CYCGRG	2 cut(s)	176, 196
BsiSI	CCGG	3 cut(s)	20, 157, 490
BslI	CCNNNNNNNGG	4 cut(s)	248, 353, 548, 844
BsmAI	GTCTC	5 cut(s)	199, 381, 506, 1033, 1044
BsmBI	CGTCTC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	175, 489
Bso31I	GGTCTC	1 cut(s)	381
BsoBI	CYCGRG	2 cut(s)	176, 196
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	2 cut(s)	655, 1015
BspACI	CCGC	6 cut(s)	39, 92, 102, 116, 246, 651
BspANI	GGCC	2 cut(s)	175, 489
BspFNI	CGCG	1 cut(s)	331
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	70
BspTNI	GGTCTC	1 cut(s)	381
BsrBI	CCGCTC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	176, 1025, 1075
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	274, 578
BssMI	GATC	2 cut(s)	655, 1015
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	1034
BssT1I	CCWWGG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	1034
Bst2UI	CCWGG	3 cut(s)	276, 762, 874
Bst6I	CTCTTC	1 cut(s)	669
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	243, 333
BstENI	CCTNNNNNAGG	1 cut(s)	842
BstF5I	GGATG	4 cut(s)	243, 495, 691, 918
BstFNI	CGCG	1 cut(s)	331
BstKTI	GATC	2 cut(s)	658, 1018
BstMAI	GTCTC	5 cut(s)	199, 381, 506, 1033, 1044
BstMBI	GATC	2 cut(s)	655, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 404
BstNI	CCWGG	3 cut(s)	276, 762, 874
BstSCI	CCNGG	5 cut(s)	156, 274, 489, 760, 872
BstSLI	GKGCMC	1 cut(s)	337
BstUI	CGCG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	722, 769
BsuRI	GGCC	2 cut(s)	175, 489
BtsCI	GGATG	4 cut(s)	243, 495, 691, 918
BtsIMutI	CAGTG	1 cut(s)	712
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	243, 333
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	670
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	174, 263
CseI	GACGC	1 cut(s)	107
CspAI	ACCGGT	1 cut(s)	19
CviAII	CATG	6 cut(s)	476, 671, 856, 863, 966, 977
DpnI	GATC	2 cut(s)	657, 1017
DpnII	GATC	2 cut(s)	655, 1015
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	578
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	308
Eco88I	CYCGRG	2 cut(s)	176, 196
EcoNI	CCTNNNNNAGG	1 cut(s)	842
EcoRII	CCWGG	3 cut(s)	274, 760, 872
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	2 cut(s)	829, 978
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	6 cut(s)	479, 674, 859, 866, 969, 980
FatI	CATG	6 cut(s)	475, 670, 855, 862, 965, 976
FauNDI	CATATG	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	102, 116, 246, 711, 758
FokI	GGATG	4 cut(s)	250, 482, 678, 925
Fsp4HI	GCNGC	5 cut(s)	102, 116, 246, 711, 758
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	5 cut(s)	102, 116, 246, 711, 758
HaeIII	GGCC	2 cut(s)	175, 489
HapII	CCGG	3 cut(s)	20, 157, 490
HgaI	GACGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	479, 674, 859, 866, 969, 980
HinfI	GANTC	2 cut(s)	386, 688
HpaII	CCGG	3 cut(s)	20, 157, 490
HphI	GGTGA	3 cut(s)	172, 175, 665
Hpy166II	GTNNAC	3 cut(s)	183, 263, 428
Hpy188I	TCNGA	4 cut(s)	385, 631, 660, 1045
Hpy188III	TCNNGA	5 cut(s)	196, 455, 671, 695, 879
Hpy8I	GTNNAC	3 cut(s)	183, 263, 428
HpyAV	CCTTC	4 cut(s)	550, 844, 848, 1040
HpyCH4IV	ACGT	3 cut(s)	7, 131, 307
HpyCH4V	TGCA	9 cut(s)	398, 407, 539, 622, 710, 827, 938, 976, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 404
HpySE526I	ACGT	3 cut(s)	7, 131, 307
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	479, 674, 859, 866, 969, 980
Kzo9I	GATC	2 cut(s)	655, 1015
LmnI	GCTCC	2 cut(s)	41, 859
Lsp1109I	GCAGC	2 cut(s)	722, 769
LweI	GCATC	4 cut(s)	210, 228, 814, 963
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	3 cut(s)	7, 131, 307
MaeIII	GTNAC	2 cut(s)	303, 794
MalI	GATC	2 cut(s)	657, 1017
MbiI	CCGCTC	1 cut(s)	118
MboI	GATC	2 cut(s)	655, 1015
MboII	GAAGA	8 cut(s)	4, 143, 175, 323, 575, 597, 618, 686
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	3 cut(s)	324, 506, 520
MluI	ACGCGT	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	2 cut(s)	40, 533
Mph1103I	ATGCAT	2 cut(s)	829, 978
MroXI	GAANNNNTTC	2 cut(s)	8, 466
MseI	TTAA	3 cut(s)	519, 720, 818
MspA1I	CMGCKG	2 cut(s)	92, 248
MspI	CCGG	3 cut(s)	20, 157, 490
MspR9I	CCNGG	5 cut(s)	158, 276, 491, 762, 874
MvaI	CCWGG	3 cut(s)	276, 762, 874
MvnI	CGCG	1 cut(s)	331
MwoI	GCNNNNNNNGC	2 cut(s)	98, 404
NciI	CCSGG	2 cut(s)	158, 491
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	2 cut(s)	655, 1015
NlaIII	CATG	6 cut(s)	479, 674, 859, 866, 969, 980
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	303
NsiI	ATGCAT	2 cut(s)	829, 978
PaeR7I	CTCGAG	1 cut(s)	196
PagI	TCATGA	1 cut(s)	670
PaqCI	CACCTGC	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	8, 466
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	2 cut(s)	353, 548
PinAI	ACCGGT	1 cut(s)	19
PkrI	GCNGC	5 cut(s)	103, 117, 247, 712, 759
PleI	GAGTC	1 cut(s)	696
PmaCI	CACGTG	1 cut(s)	308
PmlI	CACGTG	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	696
Ppu21I	YACGTR	1 cut(s)	308
Psp1406I	AACGTT	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	274, 760, 872
PspCI	CACGTG	1 cut(s)	308
PspGI	CCWGG	3 cut(s)	274, 760, 872
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	2 cut(s)	174, 263
PstNI	CAGNNNCTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	519, 720, 818
SatI	GCNGC	5 cut(s)	102, 116, 246, 711, 758
Sau3AI	GATC	2 cut(s)	655, 1015
Sau96I	GGNCC	2 cut(s)	174, 263
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	5 cut(s)	158, 276, 491, 762, 874
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	4 cut(s)	210, 228, 814, 963
Sfr274I	CTCGAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	2 cut(s)	119, 196
SmoI	CTYRAG	2 cut(s)	119, 196
Sse9I	AATT	3 cut(s)	324, 506, 520
SsiI	CCGC	6 cut(s)	39, 92, 102, 116, 246, 651
SspMI	CTAG	1 cut(s)	500
StyD4I	CCNGG	5 cut(s)	156, 274, 489, 760, 872
StyI	CCWWGG	1 cut(s)	578
TaiI	ACGT	3 cut(s)	10, 134, 310
TaqI	TCGA	3 cut(s)	197, 204, 901
TasI	AATT	3 cut(s)	324, 506, 520
TauI	GCSGC	3 cut(s)	104, 118, 248
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	3 cut(s)	519, 720, 818
Tru9I	TTAA	3 cut(s)	519, 720, 818
TscAI	CASTG	1 cut(s)	712
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	2 cut(s)	710, 757
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	5 cut(s)	17, 115, 492, 687, 954
TspRI	CASTG	1 cut(s)	712
Van91I	CCANNNNNTGG	2 cut(s)	353, 548
VpaK11BI	GGWCC	1 cut(s)	263
XagI	CCTNNNNNAGG	1 cut(s)	842
XapI	RAATTY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	549
XhoI	CTCGAG	1 cut(s)	196
XmnI	GAANNNNTTC	2 cut(s)	8, 466
XspI	CTAG	1 cut(s)	500
Zsp2I	ATGCAT	2 cut(s)	829, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.