Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

627132 .. 628139

Gene Structure 1008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCAATTTTGTATTGGCAAAGAGCTGCAAGCTATAGTCAGACGAGAATATTTGACATTTTGCAGTATGTTGCCGCACAATCGACACCAAGCCCTCGCCCTGCACAGCCACAACAAGGTGTTAGGCGCCAACCGCCTGCTGGTCGCCAACCCCCTGCTGCTTCAGCTCCAAGTCGCCAAGCAGCTGCAACAACGCAAGCACAACCCGAAGAACCGCCGTCTCCCACTTCCAGTACTTCTTCAAGCAAGGACCAAAAGGAGATTGCCGAAGCCTTAGCATCTTCACCAAACCCTAAACCTGCCCCGCAAGCAGCAGGTTCAGTTACTCTAAAAGCAACAGCAACAGCAGCTGCATCTGAATCATCGAGCCAAGCTACCCCAACTGAAGAGGTTGAACCAATGCAGATTGACGCAGTGCCATCCTCTTCAGCGACTGAAGAGACAAATCCTCCCCCGAAAGAGACAGTTATGGAGGAAACCATTCGGGTCACACGTGGAAGGTTGAGGAAAGCTCGTTCTGCAAGAAGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

178

Amino Acids

18.73

Weight (kDa)

9.68

Isoelectric Point (pI)

86.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	305, 307
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	4 cut(s)	75, 134, 215, 305
AcuI	CTGAAG	4 cut(s)	147, 405, 411, 456
AcvI	CACGTG	1 cut(s)	494
AcyI	GRCGYC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	2 cut(s)	116, 140
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	243, 395
AloI	GAACNNNNNNTCC	2 cut(s)	499, 531
AluBI	AGCT	7 cut(s)	26, 33, 167, 185, 350, 374, 512
AluI	AGCT	7 cut(s)	26, 33, 167, 185, 350, 374, 512
Alw26I	GTCTC	3 cut(s)	225, 434, 455
AlwNI	CAGNNNCTG	2 cut(s)	350, 434
ApeKI	GCWGC	7 cut(s)	26, 158, 182, 185, 311, 347, 350
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	126
BbrPI	CACGTG	1 cut(s)	494
BbvI	GCAGC	7 cut(s)	13, 145, 172, 194, 323, 337, 359
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	2 cut(s)	202, 513
BcoDI	GTCTC	3 cut(s)	225, 434, 455
BfmI	CTRYAG	1 cut(s)	34
BfoI	RGCGCY	1 cut(s)	130
BfuAI	ACCTGC	2 cut(s)	305, 307
BisI	GCNGC	8 cut(s)	27, 75, 159, 183, 186, 312, 348, 351
BlsI	GCNGC	8 cut(s)	28, 76, 160, 184, 187, 313, 349, 352
BmcAI	AGTACT	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	128
BmsI	GCATC	2 cut(s)	287, 362
BplI	GAGNNNNNCTC	2 cut(s)	496, 528
Bpu10I	CCTNAGC	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	494
BsaHI	GRCGYC	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 140
Bse1I	ACTGG	1 cut(s)	231
BseGI	GGATG	1 cut(s)	419
BseLI	CCNNNNNNNGG	2 cut(s)	116, 140
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	7 cut(s)	13, 145, 172, 194, 323, 337, 359
BsgI	GTGCAG	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	126
BslI	CCNNNNNNNGG	2 cut(s)	116, 140
BsmAI	GTCTC	3 cut(s)	225, 434, 455
BsmBI	CGTCTC	1 cut(s)	225
BspACI	CCGC	4 cut(s)	75, 134, 215, 305
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	2 cut(s)	305, 307
BspT107I	GGYRCC	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	231
BssNI	GRCGYC	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	381, 430, 432
BstACI	GRCGYC	1 cut(s)	127
BstBAI	YACGTR	1 cut(s)	494
BstC8I	GCNNGC	4 cut(s)	31, 138, 198, 309
BstDEI	CTNAG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	419
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstMAI	GTCTC	3 cut(s)	225, 434, 455
BstMWI	GCNNNNNNNGC	5 cut(s)	133, 164, 308, 347, 518
BstSFI	CTRYAG	1 cut(s)	34
BstV1I	GCAGC	7 cut(s)	13, 145, 172, 194, 323, 337, 359
BtsCI	GGATG	1 cut(s)	419
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	2 cut(s)	305, 307
Cac8I	GCNNGC	4 cut(s)	31, 138, 198, 309
CaiI	CAGNNNCTG	2 cut(s)	350, 434
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	250
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	234
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	1 cut(s)	274
DinI	GGCGCC	1 cut(s)	128
Eam1104I	CTCTTC	3 cut(s)	381, 430, 432
EarI	CTCTTC	3 cut(s)	381, 430, 432
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	4 cut(s)	147, 405, 411, 456
Eco72I	CACGTG	1 cut(s)	494
EgeI	GGCGCC	1 cut(s)	128
EheI	GGCGCC	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	225
FaiI	YATR	3 cut(s)	36, 69, 470
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	8 cut(s)	27, 75, 159, 183, 186, 312, 348, 351
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	8 cut(s)	27, 75, 159, 183, 186, 312, 348, 351
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	8 cut(s)	27, 75, 159, 183, 186, 312, 348, 351
HaeII	RGCGCY	1 cut(s)	130
HgaI	GACGC	1 cut(s)	419
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	359
HphI	GGTGA	1 cut(s)	276
Hpy188I	TCNGA	2 cut(s)	42, 358
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	7 cut(s)	29, 64, 104, 188, 353, 403, 521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	133, 164, 308, 347, 518
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	1 cut(s)	493
Hsp92I	GRCGYC	1 cut(s)	127
HspAI	GCGC	1 cut(s)	127
KasI	GGCGCC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	114, 126, 150, 168, 244, 300, 312
Lsp1109I	GCAGC	7 cut(s)	13, 145, 172, 194, 323, 337, 359
LweI	GCATC	2 cut(s)	287, 362
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	2 cut(s)	322, 487
MboII	GAAGA	6 cut(s)	221, 231, 273, 398, 417, 449
MluCI	AATT	1 cut(s)	6
Mly113I	GGCGCC	1 cut(s)	127
MnlI	CCTC	6 cut(s)	105, 382, 433, 459, 466, 498
MroXI	GAANNNNTTC	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	185, 350
MwoI	GCNNNNNNNGC	5 cut(s)	133, 164, 308, 347, 518
NarI	GGCGCC	1 cut(s)	127
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	8 cut(s)	28, 76, 160, 184, 187, 313, 349, 352
PluTI	GGCGCC	1 cut(s)	130
PmaCI	CACGTG	1 cut(s)	494
PmlI	CACGTG	1 cut(s)	494
Ppu21I	YACGTR	1 cut(s)	494
PspCI	CACGTG	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	250
PstNI	CAGNNNCTG	2 cut(s)	350, 434
PvuII	CAGCTG	2 cut(s)	185, 350
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SatI	GCNGC	8 cut(s)	27, 75, 159, 183, 186, 312, 348, 351
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	235
SfaNI	GCATC	2 cut(s)	287, 362
SfcI	CTRYAG	1 cut(s)	34
SfoI	GGCGCC	1 cut(s)	128
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	4 cut(s)	75, 134, 215, 305
SspDI	GGCGCC	1 cut(s)	126
SspI	AATATT	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	83, 365
TasI	AATT	1 cut(s)	6
TatI	WGTACW	1 cut(s)	233
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	7 cut(s)	26, 158, 182, 185, 311, 347, 350
Tsp45I	GTSAC	1 cut(s)	487
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.