pycom15g07030

F-box-like WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0003410
Physical Location & Seq
Reverse (-)
4287612 .. 4289416
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
ATGCTTTCCCTCAGTTCCACCGAATTGAACTACTTGGTCTTCCGCTACCTCCACGAATCAGGTTTCACGCACTCAGCTTACGCTTTCGGATTCGAGGCGGGAATCGATAAAAGCTCGATCGACGGAAATGTAGTTCCGCCGGGAGCGCTCGTTACTTTCCTCCAGAAAGGGCTTCAGTTTCTGGAGCTGGAGGCGGACTTGAGCAGCAATAGTGATGCCGAGATGGAGGAAGACTTGTCGTTTCTGCAACCGTTGGATCTTATCACGAAAGATGCATACCAGTTGCAGAAAATGGTGAGGGAGAAGAAGGATAGGATGAACGCCACGGCGAATGAGAGGAATGCGAGCAAGGAGGAAAGTGGAAGGGAGAATGGGAGGGAAGTAGAGGAGGAGAGGAGAGATAAGGAAAAAGAAGAAGAGGAGGATGGAGACGATAAGCTGGAGAAGGATAGAGAGCAAGAAATTGGTAAAGTTGAGGAGAAGACACACGAGGAGGATTGTAATTTGATGGAGAAGTTGGAACCTGAAGAAAATGAAACTTCTGGAGGGGTGGAACCAATGGATATAACTCCAATCTCAACATCCTTGCCTTGTGAAATTCCAAGTCGCGATTTAACAGTTCTAGAAGGCCATACCTCTGAGGTTTTTGCTTGTGCATGGAGTCCATCAGGTTCCCTTCTTGCATCTGGGTCTGGAGATTCAACTGCGCGAATTTGGACCATTGCAGATGGCAGTTGTGGATCTAGCATGCAAAATGAACCTGCAAATGTTGCAGTGTTGAAGCATTTCAAAGGTAGAGCCAATGAGAAAAGCAAGGACGTGACGACACTTGATTGGAATGGTGATGGGACATTGCTTGCAACAGGTTCTTATGATGGACAAGCAAGAATATGGAGTAAAGATGGTGAAGTTAAAGACTACATTAACCAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0001067 GO:0002021 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006508 GO:0006511 GO:0006629 GO:0006807 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0015630 GO:0016042 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0017053 GO:0019216 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0023051 GO:0023056 GO:0030111 GO:0030154 GO:0030163 GO:0030177 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035264 GO:0035601 GO:0036211 GO:0040007 GO:0042393 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045444 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0047485 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050872 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051603 GO:0060255 GO:0060612 GO:0060613 GO:0060828 GO:0061448 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090263 GO:0097159 GO:0098732 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04310 map04013 map04310
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

312

Amino Acids

34.48

Weight (kDa)

4.46

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 8 - 32 8.8e-07 LisH
WD40_WDHD1_1st PF24817 203 - 251 3e-06 WDHD1 first WD40 domain
WD40 PF00400 205 - 239 8.8e-11 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 205 - 300 5.6e-16 WDR5 beta-propeller domain
WD40_Prp19 PF24814 205 - 260 2.6e-06 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 205 - 300 1e-05 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 206 - 252 5e-08 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 206 - 256 1.5e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 206 - 257 9.8e-07 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 207 - 300 4.5e-08 CAF1B/HIR1 beta-propeller domain
WD40 PF00400 271 - 299 1.8e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 769
AccII CGCG 2 cut(s) 609, 709
AciI CCGC 4 cut(s) 43, 98, 137, 194
AclWI GGATC 2 cut(s) 264, 748
AcsI RAATTY 2 cut(s) 597, 711
AcuI CTGAAG 2 cut(s) 158, 546
AfeI AGCGCT 1 cut(s) 147
AgsI TTSAA 4 cut(s) 28, 702, 781, 790
AjiI CACGTC 1 cut(s) 820
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
AluBI AGCT 4 cut(s) 77, 114, 187, 439
AluI AGCT 4 cut(s) 77, 114, 187, 439
Alw26I GTCTC 1 cut(s) 423
AlwI GGATC 2 cut(s) 264, 748
AlwNI CAGNNNCTG 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 1 cut(s) 628
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 2 cut(s) 597, 711
Asp700I GAANNNNTTC 1 cut(s) 785
AspLEI GCGC 2 cut(s) 148, 709
AspS9I GGNCC 1 cut(s) 717
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 307, 854, 917
AvaII GGWCC 1 cut(s) 717
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 3 cut(s) 31, 237, 488
BbvI GCAGC 1 cut(s) 216
BccI CCATC 8 cut(s) 217, 419, 502, 673, 722, 839, 869, 896
BceAI ACGGC 1 cut(s) 342
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 2 cut(s) 623, 744
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 769
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 1 cut(s) 717
BmgBI CACGTC 1 cut(s) 820
BmgT120I GGNCC 1 cut(s) 717
BmiI GGNNCC 3 cut(s) 522, 555, 673
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 3 cut(s) 205, 262, 692
BpiI GAAGAC 3 cut(s) 31, 237, 488
BpmI CTGGAG 6 cut(s) 146, 203, 209, 461, 564, 714
BpuEI CTTGAG 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 2 cut(s) 720, 851
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 3 cut(s) 321, 430, 581
BseMI GCAATG 2 cut(s) 720, 851
BseMII CTCAG 3 cut(s) 25, 87, 630
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 6 cut(s) 401, 404, 409, 434, 491, 506
BseXI GCAGC 1 cut(s) 216
Bsh1236I CGCG 2 cut(s) 609, 709
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 630
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 862
BsmAI GTCTC 1 cut(s) 423
BsmBI CGTCTC 1 cut(s) 423
BsmFI GGGAC 1 cut(s) 862
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 630
Bsp143I GATC 3 cut(s) 117, 256, 740
Bsp68I TCGCGA 1 cut(s) 609
BspACI CCGC 4 cut(s) 43, 98, 137, 194
BspANI GGCC 1 cut(s) 630
BspCNI CTCAG 3 cut(s) 24, 86, 631
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 2 cut(s) 609, 709
BspLI GGNNCC 3 cut(s) 522, 555, 673
BspMI ACCTGC 1 cut(s) 769
BspPI GGATC 2 cut(s) 264, 748
BsrDI GCAATG 2 cut(s) 720, 851
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 3 cut(s) 117, 256, 740
BssSI CACGAG 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 252, 619
Bst6I CTCTTC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 3 cut(s) 346, 749, 858
BstDEI CTNAG 3 cut(s) 11, 73, 639
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 321, 430, 581
BstFNI CGCG 2 cut(s) 609, 709
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 2 cut(s) 148, 709
BstKTI GATC 3 cut(s) 120, 259, 743
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 3 cut(s) 117, 256, 740
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 145, 770
BstNSI RCATGY 1 cut(s) 751
BstSCI CCNGG 1 cut(s) 139
BstUI CGCG 2 cut(s) 609, 709
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 3 cut(s) 31, 237, 488
BstX2I RGATCY 2 cut(s) 256, 740
BstYI RGATCY 2 cut(s) 256, 740
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 1 cut(s) 630
BsuTUI ATCGAT 1 cut(s) 105
BtgI CCRYGG 1 cut(s) 324
BtrI CACGTC 1 cut(s) 820
BtsCI GGATG 3 cut(s) 321, 430, 581
BtsI GCAGTG 1 cut(s) 780
BtsIMutI CAGTG 1 cut(s) 780
BtuMI TCGCGA 1 cut(s) 609
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 3 cut(s) 346, 749, 858
CaiI CAGNNNCTG 1 cut(s) 181
CfoI GCGC 2 cut(s) 148, 709
Cfr13I GGNCC 1 cut(s) 717
ClaI ATCGAT 1 cut(s) 105
CviAII CATG 2 cut(s) 657, 748
CviJI RGCY 7 cut(s) 77, 114, 172, 187, 439, 630, 800
CviKI_1 RGCY 7 cut(s) 77, 114, 172, 187, 439, 630, 800
DdeI CTNAG 3 cut(s) 11, 73, 639
DpnI GATC 3 cut(s) 119, 258, 742
DpnII GATC 3 cut(s) 117, 256, 740
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 2 cut(s) 126, 209
Eco47I GGWCC 1 cut(s) 717
Eco47III AGCGCT 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 158, 546
EcoT22I ATGCAT 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 2 cut(s) 660, 751
FaiI YATR 8 cut(s) 277, 566, 633, 658, 749, 873, 892, 934
FaqI GGGAC 1 cut(s) 862
FatI CATG 2 cut(s) 656, 747
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 3 cut(s) 328, 437, 568
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 2 cut(s) 623, 744
GlaI GCGC 2 cut(s) 147, 708
GluI GCNGC 1 cut(s) 205
GsuI CTGGAG 6 cut(s) 146, 203, 209, 461, 564, 714
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 630
HapII CCGG 1 cut(s) 140
HhaI GCGC 2 cut(s) 148, 709
Hin1II CATG 2 cut(s) 660, 751
Hin6I GCGC 2 cut(s) 146, 707
HinP1I GCGC 2 cut(s) 146, 707
HinfI GANTC 5 cut(s) 56, 90, 102, 661, 698
HpaII CCGG 1 cut(s) 140
HphI GGTGA 3 cut(s) 307, 854, 917
Hpy188I TCNGA 2 cut(s) 89, 640
Hpy188III TCNNGA 7 cut(s) 163, 182, 265, 543, 608, 623, 693
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 301, 357, 439, 620, 686
HpyCH4III ACNGT 2 cut(s) 252, 619
HpyCH4IV ACGT 1 cut(s) 819
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 770
HpyF3I CTNAG 3 cut(s) 11, 73, 639
HpySE526I ACGT 1 cut(s) 819
Hsp92II CATG 2 cut(s) 660, 751
HspAI GCGC 2 cut(s) 146, 707
Kzo9I GATC 3 cut(s) 117, 256, 740
LmnI GCTCC 2 cut(s) 143, 184
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 3 cut(s) 205, 262, 692
MaeI CTAG 2 cut(s) 623, 744
MaeII ACGT 1 cut(s) 819
MaeIII GTNAC 2 cut(s) 151, 820
MalI GATC 3 cut(s) 119, 258, 742
MboI GATC 3 cut(s) 117, 256, 740
MboII GAAGA 7 cut(s) 31, 242, 316, 425, 428, 493, 539
MflI RGATCY 2 cut(s) 256, 740
MluCI AATT 5 cut(s) 23, 462, 502, 597, 711
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 2 cut(s) 234, 498
Mph1103I ATGCAT 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 785
MseI TTAA 3 cut(s) 614, 912, 924
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 346
MvnI CGCG 2 cut(s) 609, 709
MwoI GCNNNNNNNGC 2 cut(s) 145, 770
NciI CCSGG 1 cut(s) 141
NdeII GATC 3 cut(s) 117, 256, 740
NlaIII CATG 2 cut(s) 660, 751
NlaIV GGNNCC 3 cut(s) 522, 555, 673
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 820
NruI TCGCGA 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 751
PaeI GCATGC 1 cut(s) 751
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 4 cut(s) 56, 90, 102, 698
PkrI GCNGC 1 cut(s) 206
Ple19I CGATCG 1 cut(s) 120
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
PspN4I GGNNCC 3 cut(s) 522, 555, 673
PspPI GGNCC 1 cut(s) 717
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 256, 740
PvuI CGATCG 1 cut(s) 120
RruI TCGCGA 1 cut(s) 609
SaqAI TTAA 3 cut(s) 614, 912, 924
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 3 cut(s) 117, 256, 740
Sau96I GGNCC 1 cut(s) 717
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 1 cut(s) 141
SfaNI GCATC 3 cut(s) 205, 262, 692
SinI GGWCC 1 cut(s) 717
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SphI GCATGC 1 cut(s) 751
Sse9I AATT 5 cut(s) 23, 462, 502, 597, 711
SsiI CCGC 4 cut(s) 43, 98, 137, 194
SspMI CTAG 2 cut(s) 623, 744
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 2 cut(s) 252, 619
TaiI ACGT 1 cut(s) 822
TaqI TCGA 4 cut(s) 93, 105, 116, 120
TasI AATT 5 cut(s) 23, 462, 502, 597, 711
TfiI GAWTC 4 cut(s) 56, 90, 102, 698
Tru1I TTAA 3 cut(s) 614, 912, 924
Tru9I TTAA 3 cut(s) 614, 912, 924
TscAI CASTG 1 cut(s) 780
TseFI GTSAC 1 cut(s) 820
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 820
TspDTI ATGAA 3 cut(s) 332, 549, 771
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 780
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 2 cut(s) 597, 711
XbaI TCTAGA 1 cut(s) 622
XceI RCATGY 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 2 cut(s) 623, 744
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.