Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002477

Physical Location & Seq

Genomic Coordinates Reverse (-)

10918809 .. 10919549

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGGCGAGTCATTTTTTATGATGCCAGGACCAATAAATGGCACCGTGCCCCAGATATGCTTCGGCGGCGCCATTTCTTTGGCTCGTGCGTTATAAATAACTGCTTGTATGTTGCCGGTGGGGAGAATGAGGGAATACATCGGTCCCTGAAATCAGCTGAAGTCTATGATCCCAACAAAAATAGATGGTCCTTCATTTCAGAGATGAGCACCGCAATGGCTCCCTACATCGGGGTTATTTACGAAGGCAAATGGTTCTTGAAGGGGTTAGGGTCTCATCGACAAGTTTTGAGCGAGGTCTACCAACCAGAAAACGACAGCTGGTACTCTGTGTATGACGGAATGGTTGCAGGCTGGAGGAATCCAAGTGTTGCTTTAAACGGGCATCTCTATGCTTCGGAATGCAAAGATGGCTGCAAACTTAGAGTTTATGACAAAGCGACGGATTCTTGGAGCAAGCATATTGACAGCAAGATGCATTTGGGTAATTCTAAGGCTTTGGAGGCAGCTTCCCTTGTTCCCCTCAATGGTAAACTTTGCATCATTCGGAATAACATGAGCATCTCGCTGGTTGATGTTTCGAAATCCAGCGATGTTGGCGAGGCAAGTGCTGAATATCTGTGGGAAACTATAGCAGGTAAAGGGCAGTTCAGGACCTTGGTCACGAATCTGTGGTCAAACCTCGCCGGCAGGAACCGCCTTAAAAGTCACATAGTTCACTGCCAGGTTCTTCAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

247

Amino Acids

27.88

Weight (kDa)

9.18

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_FKB95	PF25210	2 - 158	1.1e-18	FKB95, Kelch-repeats domain
Beta-prop_Calicin	PF13964	7 - 110	8.2e-11	Calicin, beta-propeller domain
Kelch_1	PF01344	23 - 70	2.3e-15	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55270 AT1G55270
fragaria_vesca	FvH4_1g03541 FvH4_1g03541 FvH4_3g45191 FvH4_3g45191
malus_domestica	MD02G1034600.v1.1 MD03G1007500.v1.1 MD15G1175400.v1.1
prunus_persica	Prupe.6G009200_v2.0.a1 Prupe.6G009200_v2.0.a1 Prupe.7G240700_v2.0.a1 Prupe.7G240700_v2.0.a1
pyrus_communis	pycom03g00770 pycom03g00780 pycom11g00680 pycom15g15680
rosa_chinensis	RchiOBHm_Chr2g0088991 RchiOBHm_Chr2g0089041 RchiOBHm_Chr5g0082421 RchiOBHm_Chr5g0082431 RchiOBHm_Chr5g0082801
rosa_laevigata	RLG00000015985 RLG00000036990
rosa_multiflora	Rmu_co8150054.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001640 Rroxscaffold_2G00152320
rosa_rugosa	Rorug01G0486800 Rorug01G0486900 Rorug05G0478000 Rorug05G0479700
rosa_samantha	Rh2AG042300 Rh2BG040800 Rh2CG042400 Rh2DG041300 Rh5AG529500 Rh5AG530200 Rh5BG557100 Rh5CG579900
rosa_wichuraiana	Rw2G003520 Rw5G049580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	626
AccB1I	GGYRCC	2 cut(s)	42, 69
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	3 cut(s)	67, 213, 697
AclWI	GGATC	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	70
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	4 cut(s)	39, 230, 231, 527
AgsI	TTSAA	2 cut(s)	262, 734
AjnI	CCWGG	2 cut(s)	26, 723
AluBI	AGCT	3 cut(s)	158, 321, 509
AluI	AGCT	3 cut(s)	158, 321, 509
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	414, 506
ArsI	GACNNNNNNTTYG	2 cut(s)	659, 691
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	4 cut(s)	30, 144, 189, 654
AsuII	TTCGAA	1 cut(s)	581
AvaII	GGWCC	4 cut(s)	30, 144, 189, 654
BaeGI	GKGCMC	1 cut(s)	52
BanI	GGYRCC	2 cut(s)	42, 69
BauI	CACGAG	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	401, 518
BccI	CCATC	2 cut(s)	180, 404
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	2 cut(s)	28, 725
BcoDI	GTCTC	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	630
BfoI	RGCGCY	1 cut(s)	73
BfuAI	ACCTGC	1 cut(s)	626
BisI	GCNGC	3 cut(s)	68, 415, 507
BlsI	GCNGC	3 cut(s)	69, 416, 508
Bme1390I	CCNGG	2 cut(s)	28, 725
Bme18I	GGWCC	4 cut(s)	30, 144, 189, 654
BmgT120I	GGNCC	4 cut(s)	30, 144, 189, 654
BmiI	GGNNCC	5 cut(s)	44, 71, 146, 222, 695
BmrFI	CCNGG	2 cut(s)	28, 725
BmsI	GCATC	5 cut(s)	13, 394, 465, 549, 570
BoxI	GACNNNNGTC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 230, 231, 527
Bse118I	RCCGGY	2 cut(s)	116, 686
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	28, 725
BseDI	CCNNGG	1 cut(s)	657
BseLI	CCNNNNNNNGG	4 cut(s)	39, 230, 231, 527
BseMI	GCAATG	1 cut(s)	222
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	401, 518
BshNI	GGYRCC	2 cut(s)	42, 69
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	117, 687
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	39, 230, 231, 527
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	407
Bso31I	GGTCTC	1 cut(s)	279
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	52, 212
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	67, 213, 697
BspLI	GGNNCC	5 cut(s)	44, 71, 146, 222, 695
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	581
BspT107I	GGYRCC	2 cut(s)	42, 69
BspTNI	GGTCTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	2 cut(s)	116, 686
BssAI	RCCGGY	2 cut(s)	116, 686
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	1 cut(s)	169
BssNI	GRCGYC	1 cut(s)	70
BssSI	CACGAG	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	85
Bst2UI	CCWGG	2 cut(s)	28, 725
Bst4CI	ACNGT	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	352, 458, 688
BstDEI	CTNAG	2 cut(s)	422, 492
BstH2I	RGCGCY	1 cut(s)	73
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	172
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 411, 503, 597, 696
BstNI	CCWGG	2 cut(s)	28, 725
BstPAI	GACNNNNGTC	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	26, 723
BstSFI	CTRYAG	1 cut(s)	630
BstSLI	GKGCMC	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	401, 518
BstXI	CCANNNNNNTGG	1 cut(s)	80
BtgZI	GCGATG	1 cut(s)	606
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	718
BveI	ACCTGC	1 cut(s)	626
Cac8I	GCNNGC	3 cut(s)	352, 458, 688
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	2 cut(s)	116, 686
Cfr13I	GGNCC	4 cut(s)	30, 144, 189, 654
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	556
CviJI	RGCY	8 cut(s)	84, 158, 221, 321, 354, 414, 497, 509
CviKI_1	RGCY	8 cut(s)	84, 158, 221, 321, 354, 414, 497, 509
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	422, 492
DinI	GGCGCC	1 cut(s)	71
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DraI	TTTAAA	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	4 cut(s)	30, 144, 189, 654
Eco57I	CTGAAG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRII	CCWGG	2 cut(s)	26, 723
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	480
EgeI	GGCGCC	1 cut(s)	71
EheI	GGCGCC	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	1 cut(s)	559
FalI	AAGNNNNNCTT	2 cut(s)	358, 390
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	68, 415, 507
Fsp4HI	GCNGC	3 cut(s)	68, 415, 507
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	3 cut(s)	68, 415, 507
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	73
HapII	CCGG	2 cut(s)	117, 687
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	559
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	4 cut(s)	9, 361, 446, 667
HpaII	CCGG	2 cut(s)	117, 687
Hpy166II	GTNNAC	3 cut(s)	301, 533, 718
Hpy188I	TCNGA	3 cut(s)	202, 400, 549
Hpy188III	TCNNGA	3 cut(s)	259, 652, 664
Hpy8I	GTNNAC	3 cut(s)	301, 533, 718
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	3 cut(s)	202, 239, 256
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	350, 405, 417, 478, 540
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 411, 503, 597, 696
HpyF3I	CTNAG	2 cut(s)	422, 492
Hsp92I	GRCGYC	1 cut(s)	70
Hsp92II	CATG	1 cut(s)	559
HspAI	GCGC	1 cut(s)	70
KasI	GGCGCC	1 cut(s)	69
KroI	GCCGGC	1 cut(s)	686
KroNI	GCCGGC	1 cut(s)	688
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	226, 453
Lsp1109I	GCAGC	2 cut(s)	401, 518
LweI	GCATC	5 cut(s)	13, 394, 465, 549, 570
MaeIII	GTNAC	2 cut(s)	661, 707
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	722
MhlI	GDGCHC	2 cut(s)	52, 212
MluCI	AATT	1 cut(s)	487
Mly113I	GGCGCC	1 cut(s)	70
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	7 cut(s)	124, 289, 351, 496, 533, 595, 692
Mph1103I	ATGCAT	1 cut(s)	480
MroNI	GCCGGC	1 cut(s)	686
MseI	TTAA	2 cut(s)	377, 702
MslI	CAYNNNNRTG	2 cut(s)	215, 390
MspA1I	CMGCKG	2 cut(s)	158, 321
MspI	CCGG	2 cut(s)	117, 687
MspR9I	CCNGG	2 cut(s)	28, 725
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	28, 725
MwoI	GCNNNNNNNGC	5 cut(s)	67, 411, 503, 597, 696
NaeI	GCCGGC	1 cut(s)	688
NarI	GGCGCC	1 cut(s)	70
NdeII	GATC	1 cut(s)	169
NgoMIV	GCCGGC	1 cut(s)	686
NlaIII	CATG	1 cut(s)	559
NlaIV	GGNNCC	5 cut(s)	44, 71, 146, 222, 695
NmuCI	GTSAC	2 cut(s)	661, 707
NsiI	ATGCAT	1 cut(s)	480
NspV	TTCGAA	1 cut(s)	581
PctI	GAATGC	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	688
PfeI	GAWTC	3 cut(s)	361, 446, 667
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	69, 416, 508
PleI	GAGTC	1 cut(s)	17
PluTI	GGCGCC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	17
PpuMI	RGGWCCY	1 cut(s)	654
PshAI	GACNNNNGTC	1 cut(s)	659
PsiI	TTATAA	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	26, 723
PspGI	CCWGG	2 cut(s)	26, 723
PspN4I	GGNNCC	5 cut(s)	44, 71, 146, 222, 695
PspPI	GGNCC	4 cut(s)	30, 144, 189, 654
PspPPI	RGGWCCY	1 cut(s)	654
PvuII	CAGCTG	2 cut(s)	158, 321
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	2 cut(s)	215, 390
SaqAI	TTAA	2 cut(s)	377, 702
SatI	GCNGC	3 cut(s)	68, 415, 507
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	4 cut(s)	30, 144, 189, 654
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	28, 725
SduI	GDGCHC	2 cut(s)	52, 212
SetI	ASST	8 cut(s)	160, 300, 323, 511, 640, 659, 684, 729
SfaNI	GCATC	5 cut(s)	13, 394, 465, 549, 570
SfcI	CTRYAG	1 cut(s)	630
SfoI	GGCGCC	1 cut(s)	71
SfuI	TTCGAA	1 cut(s)	581
SinI	GGWCC	4 cut(s)	30, 144, 189, 654
SmiMI	CAYNNNNRTG	2 cut(s)	215, 390
Sse9I	AATT	1 cut(s)	487
SsiI	CCGC	3 cut(s)	67, 213, 697
SspDI	GGCGCC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	26, 723
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	280, 581
TaqII	GACCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	487
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	361, 446, 667
Tru1I	TTAA	2 cut(s)	377, 702
Tru9I	TTAA	2 cut(s)	377, 702
TscAI	CASTG	1 cut(s)	725
TseFI	GTSAC	2 cut(s)	661, 707
TseI	GCWGC	2 cut(s)	414, 506
Tsp45I	GTSAC	2 cut(s)	661, 707
TspDTI	ATGAA	1 cut(s)	184
TspGWI	ACGGA	2 cut(s)	354, 458
TspRI	CASTG	1 cut(s)	725
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	4 cut(s)	30, 144, 189, 654
XmiI	GTMKAC	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.