pycom15g21600

Gibberellin-regulated protein 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0004300
Physical Location & Seq
Forward (+)
15622437 .. 15623382
946 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
ATGTTAAGCAAAGATATTAGTGGTAAACAAAAAACAAAGCAAACACAAAACAAAAGAAGAAAACATTGGTTAAAAGGAGATGAGTTGGAGCGCAGCCTGGCAGTCCAAACTAATATACTCCCTTCTTCTTCTTCCATAAATATAATCAAGATGGCTTTGTCATCAAGAATGCTCATAGCTTCCATGCTTGTCTCTTTTCTACTTCTCCAATATCTCACTGAAGCAGCTGATCATCAGTATAAGACGATGGACGTCAATGGAGCCCCAAGCCCCCAGGCCCCGACATTAGATTGTGGAGTGGCATGTGAAGGAAGGTGCAAATTATCATCGAGGCCTCGTCTCTGCAAAAGGGCATGTGGGAGTTGTTGTGACAAGTGCAATTGTGTTCCTCCAGGCACTTCTGGCAACTATGAGTCATGTCCTTGCTATTTTAACCTCAAAACCCACAATGACACCCGCAAATGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GASA

Protein Analysis

157

Amino Acids

17.26

Weight (kDa)

9.22

Isoelectric Point (pI)

65.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 97 - 156 2.7e-20 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 255
AciI CCGC 1 cut(s) 457
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 252
AjnI CCWGG 3 cut(s) 96, 273, 391
AjuI GAANNNNNNNTTGG 2 cut(s) 49, 81
AluBI AGCT 2 cut(s) 179, 227
AluI AGCT 2 cut(s) 179, 227
Alw26I GTCTC 2 cut(s) 196, 344
AoxI GGCC 2 cut(s) 276, 332
ApeKI GCWGC 2 cut(s) 93, 224
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 105, 236
BccI CCATC 2 cut(s) 145, 241
BciT130I CCWGG 3 cut(s) 98, 275, 393
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 196, 344
BisI GCNGC 2 cut(s) 94, 225
BlsI GCNGC 2 cut(s) 95, 226
Bme1390I CCNGG 3 cut(s) 98, 275, 393
BmgT120I GGNCC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 262, 279
BmrFI CCNGG 3 cut(s) 98, 275, 393
BpmI CTGGAG 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
BseBI CCWGG 3 cut(s) 98, 275, 393
BseDI CCNNGG 1 cut(s) 273
BseXI GCAGC 2 cut(s) 105, 236
BshFI GGCC 2 cut(s) 278, 334
BsmAI GTCTC 2 cut(s) 196, 344
BsmBI CGTCTC 1 cut(s) 344
BsmI GAATGC 1 cut(s) 174
BsnI GGCC 2 cut(s) 278, 334
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 457
BspANI GGCC 2 cut(s) 278, 334
BspLI GGNNCC 2 cut(s) 262, 279
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 229
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 3 cut(s) 98, 275, 393
BstACI GRCGYC 1 cut(s) 252
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 196, 344
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 3 cut(s) 98, 275, 393
BstNSI RCATGY 2 cut(s) 306, 357
BstSCI CCNGG 3 cut(s) 96, 273, 391
BstV1I GCAGC 2 cut(s) 105, 236
BsuRI GGCC 2 cut(s) 278, 334
BtsIMutI CAGTG 1 cut(s) 216
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 1 cut(s) 277
CviAII CATG 4 cut(s) 184, 303, 354, 417
CviJI RGCY 8 cut(s) 96, 155, 179, 227, 263, 270, 278, 334
CviKI_1 RGCY 8 cut(s) 96, 155, 179, 227, 263, 270, 278, 334
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 277
EcoRII CCWGG 3 cut(s) 96, 273, 391
EcoT38I GRGCYC 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 4 cut(s) 187, 306, 357, 420
FatI CATG 4 cut(s) 183, 302, 353, 416
FauI CCCGC 1 cut(s) 464
FbaI TGATCA 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 94, 225
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 2 cut(s) 94, 225
GlaI GCGC 1 cut(s) 92
GluI GCNGC 2 cut(s) 94, 225
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 2 cut(s) 278, 334
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 4 cut(s) 187, 306, 357, 420
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HinfI GANTC 1 cut(s) 413
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 2 cut(s) 148, 165
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 3 cut(s) 132, 302, 306
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 318, 345, 378
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 4 cut(s) 187, 306, 357, 420
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 2 cut(s) 88, 260
LpnPI CCDG 7 cut(s) 83, 110, 260, 287, 378, 387, 405
Lsp1109I GCAGC 2 cut(s) 105, 236
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 368
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 4 cut(s) 69, 117, 120, 123
MfeI CAATTG 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 2 cut(s) 320, 379
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 4 cut(s) 324, 345, 399, 446
MseI TTAA 4 cut(s) 5, 71, 432, 469
MspA1I CMGCKG 1 cut(s) 227
MspR9I CCNGG 3 cut(s) 98, 275, 393
MunI CAATTG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 174
MvaI CCWGG 3 cut(s) 98, 275, 393
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 1 cut(s) 229
NlaIII CATG 4 cut(s) 187, 306, 357, 420
NlaIV GGNNCC 2 cut(s) 262, 279
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 2 cut(s) 306, 357
PceI AGGCCT 1 cut(s) 334
PctI GAATGC 1 cut(s) 174
PkrI GCNGC 2 cut(s) 95, 226
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp6I CCWGG 3 cut(s) 96, 273, 391
PspGI CCWGG 3 cut(s) 96, 273, 391
PspN4I GGNNCC 2 cut(s) 262, 279
PspPI GGNCC 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 227
SaqAI TTAA 4 cut(s) 5, 71, 432, 469
SatI GCNGC 2 cut(s) 94, 225
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 277
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 3 cut(s) 98, 275, 393
SduI GDGCHC 1 cut(s) 265
SetI ASST 5 cut(s) 181, 229, 255, 317, 438
Sse9I AATT 2 cut(s) 320, 379
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 1 cut(s) 457
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 3 cut(s) 96, 273, 391
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 329
TasI AATT 2 cut(s) 320, 379
Tru1I TTAA 4 cut(s) 5, 71, 432, 469
Tru9I TTAA 4 cut(s) 5, 71, 432, 469
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 2 cut(s) 93, 224
Tsp45I GTSAC 1 cut(s) 368
TspRI CASTG 1 cut(s) 223
XceI RCATGY 2 cut(s) 306, 357
ZraI GACGTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.