pycom15g21680

Glycosyl hydrolase family 9

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
15714940 .. 15717922
2983 bp
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UTR
Exon/CDS
Intron
pycom15g21680.1

Sequence Viewer

Length: 1569 bp
ATGGAACTGAAAGCTGGGAAAGAAGCTGATTGCAGCACAGAATCGAAGTCGAAGACGGAGAGATGGTGTTGGCGGTTACTTCTGTTATTAACTCTCTCTCTGCTAGCAGCAATGGTTTCACTTACTCTTGTACAGTATTTCAAGCACTGGAAATCAAGCAGGGTCTCGGGTCACATCGAACCAAAATACTCCGAAGCTCTTCAGATCTCCATGCAGTTCTTCGATGCCCAGAAATGTAACATAAACCCAATTCTCCGTTTCTTGTCTTGCGGTCTTTTTGGGACTGCTTCTGGAAAGGCTAAAAGCGGTTTTCTGTCAACTAGAACTGGTAAGCTGGTGGATAACCCCATTCTGTGGCGAGGGGATTCGGGCCTCCAAGACGGGAGTGAGGAAGATTTGGATTTGTCAAAGGGACTGTATGATGCAGGTGATCTCATCAAGTTTGGCTTTCCCATGGCTTTCACTGCAACTGTGTTGTCTTGGGCGATTCTTGAATATGGAGACCGAATGAAAGCTGTGAAGCAGTTGGATCATGCCCATGACTCACTTAAGTGGATCACTGATTACCTAATCAATGCACATGCTTCTCCAAATGTGCTTTATGTTCAGGTGGGTGATCCCGAGTTGGATCACAACTGTTGGCAGAGACCGGAAGTAATGACAGAGAAAAGGCCTCTGATTCAAATCAACACATCCTTCCCAGGAACAGATGTTGCAGCAGAAACTGCAGCTGCCATGGCATCGGCATCTCTGGTGTTCAGGAAAATCAACTCCTCTTACTCTAAGTTGCTCCTCACGCACGCCGAGCAGCTGTTTTCTTTTGCTGATACTTATAGAGGTGCTTATAGTGTCAGCATTCCCCAAGTGCAAATCTACTACAACTCTACAGGATATGGAGACGAACTCTTATGGGCAGCTACCTGGCTCTATCATGCAACTAAAGACCCAACCTATTTCAAATATGCAACCGAACAGAACGGGCCAGCGTTTGCAAATTGGGGAAGTCCGTCTTGGTTTAGCTGGGATGACAAGCATGCTGCAACTCAGGTACATATGTCATGCGATGTAGGCGGTCTGATTTGGGTGATAAAATGGAACTGTCTACAGCATGCTGTGGCTTCAGCATTTTTAGCCATTCTCTATAGTGACTACATGCTAACATCTAAAACCGAAATGCTGTATTGCGATGGAAAATCCTACAATCCTGTTGATCTTCGCAAGTTTGCCATCTCTCAGGCAGATTATGTGCTAGGCAAAAACCCGATGAGGATAAGCTACCTTGTAGGGTACGGAAGCAGCTACCCTCAATATGTTCACCACAGGGGAGCTTCAATTCCAGTGGATGCAGAAACCGGCTGCAGAGACGGGTTTAAGTGGCTGGACTCACCCAATCCCAACCCAAATGTAGCTGTTGGTGCCCTAGTTGGTGGCCCATTCATGAATGAGACCTACATTGATTCCAGGAACAATTCAATGCAAGGTGAGCCAAGCACTTACAATAGTGCCCTTATTGTGGCACTCCTATCAGGCTTAGTTACCACTTCTCCAGTGGCTAAGACTTTCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

523

Amino Acids

58.03

Weight (kDa)

6.23

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 96 - 353 1.2e-93 Glycosyl hydrolase family 9
Glyco_hydro_9 PF00759 357 - 508 3.8e-40 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 1415
AccB7I CCANNNNNTGG 1 cut(s) 354
AccI GTMKAC 1 cut(s) 1102
AciI CCGC 4 cut(s) 73, 270, 306, 1071
AclWI GGATC 4 cut(s) 537, 563, 611, 636
AcuI CTGAAG 2 cut(s) 185, 1104
AfaI GTAC 3 cut(s) 132, 1050, 1289
AfiI CCNNNNNNNGG 2 cut(s) 354, 1513
AflII CTTAAG 1 cut(s) 548
AgsI TTSAA 6 cut(s) 142, 494, 683, 958, 1332, 1473
AjnI CCWGG 3 cut(s) 700, 920, 1460
AjuI GAANNNNNNNTTGG 2 cut(s) 994, 1026
AleI CACNNNNGTG 1 cut(s) 550
Alw26I GTCTC 6 cut(s) 169, 495, 640, 891, 1356, 1439
AlwI GGATC 4 cut(s) 537, 563, 611, 636
AlwNI CAGNNNCTG 1 cut(s) 725
Ama87I CYCGRG 2 cut(s) 166, 620
AoxI GGCC 4 cut(s) 370, 671, 980, 1429
Asp700I GAANNNNTTC 1 cut(s) 198
AspS9I GGNCC 3 cut(s) 370, 980, 1430
AsuHPI GGTGA 6 cut(s) 440, 626, 1096, 1307, 1377, 1493
AsuNHI GCTAGC 1 cut(s) 103
AvaI CYCGRG 2 cut(s) 166, 620
BaeGI GKGCMC 2 cut(s) 1420, 1507
BaeI ACNNNNGTAYC 2 cut(s) 1040, 1073
BanI GGYRCC 1 cut(s) 1415
BbsI GAAGAC 1 cut(s) 59
BccI CCATC 3 cut(s) 57, 1181, 1235
BciT130I CCWGG 3 cut(s) 702, 922, 1462
BcoDI GTCTC 6 cut(s) 169, 495, 640, 891, 1356, 1439
BfaI CTAG 4 cut(s) 104, 321, 1250, 1421
BfmI CTRYAG 5 cut(s) 726, 885, 1103, 1141, 1357
BfrI CTTAAG 1 cut(s) 548
BfuAI ACCTGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 204
Bme1390I CCNGG 3 cut(s) 702, 922, 1462
BmeT110I CYCGRG 2 cut(s) 166, 620
BmgT120I GGNCC 3 cut(s) 370, 980, 1430
BmiI GGNNCC 1 cut(s) 1417
BmrFI CCNGG 3 cut(s) 702, 922, 1462
BmsI GCATC 5 cut(s) 214, 412, 749, 755, 1333
BmtI GCTAGC 1 cut(s) 107
BpiI GAAGAC 1 cut(s) 59
BplI GAGNNNNNCTC 2 cut(s) 888, 920
BpmI CTGGAG 1 cut(s) 1530
BsaBI GATNNNNATC 1 cut(s) 683
BsaI GGTCTC 4 cut(s) 169, 495, 640, 1439
BsaJI CCNNGG 3 cut(s) 453, 700, 735
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 1528, 1558
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 1513
Bse118I RCCGGY 1 cut(s) 1352
Bse1I ACTGG 4 cut(s) 152, 331, 1337, 1547
Bse3DI GCAATG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 683
BseBI CCWGG 3 cut(s) 702, 922, 1462
BseDI CCNNGG 3 cut(s) 453, 700, 735
BseGI GGATG 3 cut(s) 692, 1030, 1348
BseJI GATNNNNATC 1 cut(s) 683
BseLI CCNNNNNNNGG 2 cut(s) 354, 1513
BseMI GCAATG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 1058, 1247
BseNI ACTGG 4 cut(s) 152, 331, 1337, 1547
BseRI GAGGAG 2 cut(s) 763, 782
BseSI GKGCMC 2 cut(s) 1420, 1507
BseYI CCCAGC 2 cut(s) 14, 1020
BshFI GGCC 4 cut(s) 372, 673, 982, 1431
BshNI GGYRCC 1 cut(s) 1415
BsiHKCI CYCGRG 2 cut(s) 166, 620
BsiSI CCGG 2 cut(s) 650, 1353
BslFI GGGAC 2 cut(s) 295, 426
BslI CCNNNNNNNGG 2 cut(s) 354, 1513
BsmAI GTCTC 6 cut(s) 169, 495, 640, 891, 1356, 1439
BsmBI CGTCTC 2 cut(s) 891, 1356
BsmFI GGGAC 2 cut(s) 295, 426
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 4 cut(s) 372, 673, 982, 1431
Bso31I GGTCTC 4 cut(s) 169, 495, 640, 1439
BsoBI CYCGRG 2 cut(s) 166, 620
Bsp1286I GDGCHC 2 cut(s) 1420, 1507
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
Bsp19I CCATGG 2 cut(s) 453, 735
BspACI CCGC 4 cut(s) 73, 270, 306, 1071
BspANI GGCC 4 cut(s) 372, 673, 982, 1431
BspCNI CTCAG 2 cut(s) 1057, 1246
BspHI TCATGA 1 cut(s) 1437
BspLI GGNNCC 1 cut(s) 1417
BspMAI CTGCAG 2 cut(s) 730, 1361
BspMI ACCTGC 1 cut(s) 416
BspOI GCTAGC 1 cut(s) 107
BspPI GGATC 4 cut(s) 537, 563, 611, 636
BspQI GCTCTTC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 1415
BspTI CTTAAG 1 cut(s) 548
BspTNI GGTCTC 4 cut(s) 169, 495, 640, 1439
BsrDI GCAATG 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 1352
BsrGI TGTACA 1 cut(s) 130
BsrI ACTGG 4 cut(s) 152, 331, 1337, 1547
BssAI RCCGGY 1 cut(s) 1352
BssECI CCNNGG 3 cut(s) 453, 700, 735
BssMI GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
BssT1I CCWWGG 2 cut(s) 453, 735
Bst2UI CCWGG 3 cut(s) 702, 922, 1462
Bst4CI ACNGT 5 cut(s) 135, 417, 472, 638, 1100
Bst6I CTCTTC 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 548
BstAPI GCANNNNNTGC 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 130
BstC8I GCNNGC 5 cut(s) 105, 801, 984, 1035, 1110
BstDEI CTNAG 5 cut(s) 783, 1044, 1233, 1531, 1554
BstDSI CCRYGG 2 cut(s) 453, 735
BstF5I GGATG 3 cut(s) 692, 1030, 1348
BstKTI GATC 7 cut(s) 207, 433, 532, 558, 619, 631, 1213
BstMAI GTCTC 6 cut(s) 169, 495, 640, 891, 1356, 1439
BstMBI GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
BstMWI GCNNNNNNNGC 9 cut(s) 464, 725, 737, 796, 805, 1068, 1130, 1415, 1483
BstNI CCWGG 3 cut(s) 702, 922, 1462
BstNSI RCATGY 4 cut(s) 584, 1037, 1112, 1156
BstSCI CCNGG 3 cut(s) 700, 920, 1460
BstSFI CTRYAG 5 cut(s) 726, 885, 1103, 1141, 1357
BstSLI GKGCMC 2 cut(s) 1420, 1507
BstV2I GAAGAC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 4 cut(s) 372, 673, 982, 1431
BtgI CCRYGG 2 cut(s) 453, 735
BtgZI GCGATG 2 cut(s) 1077, 1200
BtsCI GGATG 3 cut(s) 692, 1030, 1348
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 5 cut(s) 145, 462, 558, 1344, 1554
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 5 cut(s) 105, 801, 984, 1035, 1110
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 1437
Cfr10I RCCGGY 1 cut(s) 1352
Cfr13I GGNCC 3 cut(s) 370, 980, 1430
Csp6I GTAC 3 cut(s) 131, 1049, 1288
CspCI CAANNNNNGTGG 2 cut(s) 1320, 1355
CviQI GTAC 3 cut(s) 131, 1049, 1288
DdeI CTNAG 5 cut(s) 783, 1044, 1233, 1531, 1554
DpnI GATC 7 cut(s) 206, 432, 531, 557, 618, 630, 1212
DpnII GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 453, 735
Eco147I AGGCCT 1 cut(s) 673
Eco31I GGTCTC 4 cut(s) 169, 495, 640, 1439
Eco57I CTGAAG 2 cut(s) 185, 1104
Eco88I CYCGRG 2 cut(s) 166, 620
EcoRII CCWGG 3 cut(s) 700, 920, 1460
EcoT14I CCWWGG 2 cut(s) 453, 735
ErhI CCWWGG 2 cut(s) 453, 735
Esp3I CGTCTC 2 cut(s) 891, 1356
FalI AAGNNNNNCTT 4 cut(s) 431, 463, 994, 1026
FaqI GGGAC 2 cut(s) 295, 426
FauNDI CATATG 1 cut(s) 1053
FblI GTMKAC 1 cut(s) 1102
FokI GGATG 3 cut(s) 679, 1037, 1355
FspBI CTAG 4 cut(s) 104, 321, 1250, 1421
GsaI CCCAGC 2 cut(s) 18, 1024
GsuI CTGGAG 1 cut(s) 1530
HaeIII GGCC 4 cut(s) 372, 673, 982, 1431
HapII CCGG 2 cut(s) 650, 1353
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
HinfI GANTC 7 cut(s) 41, 365, 487, 542, 679, 1382, 1457
HpaII CCGG 2 cut(s) 650, 1353
HphI GGTGA 6 cut(s) 440, 626, 1096, 1307, 1377, 1493
Hpy166II GTNNAC 3 cut(s) 318, 1103, 1315
Hpy188I TCNGA 4 cut(s) 193, 204, 678, 1077
Hpy188III TCNNGA 5 cut(s) 291, 491, 620, 760, 1438
Hpy8I GTNNAC 3 cut(s) 318, 1103, 1315
HpyAV CCTTC 1 cut(s) 706
HpyCH4III ACNGT 5 cut(s) 135, 417, 472, 638, 1100
HpyF10VI GCNNNNNNNGC 9 cut(s) 464, 725, 737, 796, 805, 1068, 1130, 1415, 1483
HpyF3I CTNAG 5 cut(s) 783, 1044, 1233, 1531, 1554
Kzo9I GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
LguI GCTCTTC 1 cut(s) 204
LmnI GCTCC 2 cut(s) 795, 1325
LweI GCATC 5 cut(s) 214, 412, 749, 755, 1333
MaeI CTAG 4 cut(s) 104, 321, 1250, 1421
MaeIII GTNAC 5 cut(s) 75, 170, 236, 1145, 1534
MalI GATC 7 cut(s) 206, 432, 531, 557, 618, 630, 1212
MboI GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
MboII GAAGA 5 cut(s) 64, 191, 211, 404, 1205
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 2 cut(s) 1420, 1507
MluCI AATT 4 cut(s) 249, 994, 1332, 1468
MlyI GAGTC 2 cut(s) 536, 1376
MmeI TCCRAC 2 cut(s) 507, 606
MnlI CCTC 9 cut(s) 353, 382, 383, 684, 784, 803, 830, 1260, 1314
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 3 cut(s) 89, 549, 1371
MslI CAYNNNNRTG 2 cut(s) 537, 550
MspA1I CMGCKG 2 cut(s) 731, 811
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 2 cut(s) 650, 1353
MspR9I CCNGG 3 cut(s) 702, 922, 1462
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 3 cut(s) 702, 922, 1462
MwoI GCNNNNNNNGC 9 cut(s) 464, 725, 737, 796, 805, 1068, 1130, 1415, 1483
NcoI CCATGG 2 cut(s) 453, 735
NdeI CATATG 1 cut(s) 1053
NdeII GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
NheI GCTAGC 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 1417
NmeAIII GCCGAG 1 cut(s) 829
NmuCI GTSAC 2 cut(s) 170, 1145
NspI RCATGY 4 cut(s) 584, 1037, 1112, 1156
OliI CACNNNNGTG 1 cut(s) 550
PaeI GCATGC 2 cut(s) 1037, 1112
PagI TCATGA 1 cut(s) 1437
PaqCI CACCTGC 1 cut(s) 416
PceI AGGCCT 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 204
PctI GAATGC 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 5 cut(s) 41, 365, 487, 679, 1457
PflMI CCANNNNNTGG 1 cut(s) 354
PfoI TCCNGGA 1 cut(s) 1460
PleI GAGTC 2 cut(s) 536, 1376
PpsI GAGTC 2 cut(s) 536, 1376
Psp6I CCWGG 3 cut(s) 700, 920, 1460
PspFI CCCAGC 2 cut(s) 14, 1020
PspGI CCWGG 3 cut(s) 700, 920, 1460
PspN4I GGNNCC 1 cut(s) 1417
PspPI GGNCC 3 cut(s) 370, 980, 1430
PstI CTGCAG 2 cut(s) 730, 1361
PstNI CAGNNNCTG 1 cut(s) 725
PsuI RGATCY 1 cut(s) 204
PvuII CAGCTG 2 cut(s) 731, 811
RsaI GTAC 3 cut(s) 132, 1050, 1289
RsaNI GTAC 3 cut(s) 131, 1049, 1288
RseI CAYNNNNRTG 2 cut(s) 537, 550
SapI GCTCTTC 1 cut(s) 204
SaqAI TTAA 3 cut(s) 89, 549, 1371
Sau3AI GATC 7 cut(s) 204, 430, 529, 555, 616, 628, 1210
Sau96I GGNCC 3 cut(s) 370, 980, 1430
SchI GAGTC 2 cut(s) 536, 1376
ScrFI CCNGG 3 cut(s) 702, 922, 1462
SduI GDGCHC 2 cut(s) 1420, 1507
SfaNI GCATC 5 cut(s) 214, 412, 749, 755, 1333
SfcI CTRYAG 5 cut(s) 726, 885, 1103, 1141, 1357
SmiMI CAYNNNNRTG 2 cut(s) 537, 550
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SphI GCATGC 2 cut(s) 1037, 1112
Sse9I AATT 4 cut(s) 249, 994, 1332, 1468
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 4 cut(s) 73, 270, 306, 1071
SspMI CTAG 4 cut(s) 104, 321, 1250, 1421
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 3 cut(s) 700, 920, 1460
StyI CCWWGG 2 cut(s) 453, 735
TaaI ACNGT 5 cut(s) 135, 417, 472, 638, 1100
TaqI TCGA 4 cut(s) 44, 50, 177, 222
TaqII GACCGA 1 cut(s) 519
TasI AATT 4 cut(s) 249, 994, 1332, 1468
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 5 cut(s) 41, 365, 487, 679, 1457
Tru1I TTAA 3 cut(s) 89, 549, 1371
Tru9I TTAA 3 cut(s) 89, 549, 1371
TscAI CASTG 5 cut(s) 152, 469, 565, 1344, 1554
TseFI GTSAC 2 cut(s) 170, 1145
Tsp45I GTSAC 2 cut(s) 170, 1145
TspDTI ATGAA 3 cut(s) 524, 1426, 1454
TspGWI ACGGA 4 cut(s) 71, 245, 996, 1305
TspRI CASTG 5 cut(s) 152, 469, 565, 1344, 1554
Van91I CCANNNNNTGG 1 cut(s) 354
Vha464I CTTAAG 1 cut(s) 548
XceI RCATGY 4 cut(s) 584, 1037, 1112, 1156
XcmI CCANNNNNNNNNTGG 1 cut(s) 1546
XmiI GTMKAC 1 cut(s) 1102
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 4 cut(s) 104, 321, 1250, 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.