Rmu_sc0005120.1_g000001

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005120.1
Physical Location & Seq
Forward (+)
646 .. 3197
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005120.1_g000001.1.cds

Sequence Viewer

Length: 1425 bp
atgaatcaaacgtatcattcttcagaatcttcggcctctcacaatcacaaagccctcgagtcctgtctccatgtcctccaagaaccaaaacaaacagtgtcttcaaaatctttaaaaagccaagaacgtcctcaaatgtacatcgttctaaatggttcaaatttcaaagaagaagttgcgttgcagatttgtgtaaatggtggaaggagaagaaaaagcttatcacagagagtcgaacacaagctggggttggcggttaattctgttactatatatatctctcgtcgccgctgttgctaccctcactctgctaagaaacttcaaccgctacttccattcaagtcaggtgactcaggtctcgggtcgacccggacctctgggaagctgatgaagaaccgggtcgcgtggagaggcgactcggggctccaagatgggagtgaggaggggttggacttatcaaaggggatgtatgatgctggtgatcttttaaagtttgggtttcctatggctttcactgcaacagttttgtcttgggctattcttgaatatggggaccaaatgaaagaggtgaagcaattgggtcatgcccatgactcactgaagtggatcactgattacttgatcaatgcacatccttccccaaatgtgctctatatccaggtgggtgatcctgaattagaccacaattgttggcaaagacctgaaaccatgacagagagaaggcctctagttcaaatcaacacatctttcccaggaacagaagtggcagcagaaatagcagcagctatggcatcagcatatcttgtgttctacaactcttcaggatatggagatgagctattgtgggcagctacctggctctaccatgcaactggagatctggactacctcaagtatgtgaccgaacagaacgggccgacatttgctaactggagaagtccatcttggataagtttcttcggtgcaaaagagctccctatggcagagaaccttgatctccagatgtaccaaaaaactgcaaaggtcttcttgtgtggacttatacctgattcgcctacggccgcacctgatagaacagacagtaatgttcctaacaataattacgtgttgggaaaaaatccgatgaagatgagttatcttgtagggtatgggggtaactaccctcaacaagtgcaccataggggatcttcaattccggttgatgcagacactggctgcatagatgggtttaaatggctgtactgccccgatccgaatccaaatgtagctgttgttgccctggttggtggcccttttcagaatgatagctatatgcatatcaggaacaattcaaagcaaggtgaaccaagaacttataatggtgctctcattgttgccctgctctctggcttagtttccacttcttcggtgcccaagcacttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

474

Amino Acids

52.55

Weight (kDa)

7.63

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1356, 1423
AccB1I GGYRCC 1 cut(s) 1408
AccI GTMKAC 1 cut(s) 365
AccII CGCG 1 cut(s) 404
AciI CCGC 4 cut(s) 254, 289, 326, 1062
AclWI GGATC 4 cut(s) 614, 662, 1192, 1244
AcoI YGGCCR 1 cut(s) 1059
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 3 cut(s) 6, 620, 804
AfaI GTAC 3 cut(s) 140, 1007, 1241
AflIII ACRYGT 1 cut(s) 1104
AgsI TTSAA 9 cut(s) 105, 159, 166, 323, 340, 545, 734, 1191, 1332
AjnI CCWGG 4 cut(s) 657, 751, 854, 1278
AjuI GAANNNNNNNTTGG 2 cut(s) 928, 960
AleI CACNNNNGTG 1 cut(s) 601
AluBI AGCT 9 cut(s) 219, 244, 385, 785, 838, 851, 973, 1268, 1308
AluI AGCT 9 cut(s) 219, 244, 385, 785, 838, 851, 973, 1268, 1308
Alw21I GWGCWC 4 cut(s) 651, 975, 1176, 1366
Alw26I GTCTC 2 cut(s) 71, 362
Alw44I GTGCAC 1 cut(s) 1172
AlwI GGATC 4 cut(s) 614, 662, 1192, 1244
AlwNI CAGNNNCTG 1 cut(s) 1211
Ama87I CYCGRG 3 cut(s) 56, 359, 418
AoxI GGCC 5 cut(s) 33, 722, 914, 1059, 1288
ApaLI GTGCAC 1 cut(s) 1172
ApeKI GCWGC 5 cut(s) 767, 779, 782, 848, 1215
ApoI RAATTY 1 cut(s) 160
AspS9I GGNCC 4 cut(s) 372, 553, 914, 1289
AsuC2I CCSGG 2 cut(s) 370, 398
AsuHPI GGTGA 5 cut(s) 359, 491, 580, 677, 1352
AvaI CYCGRG 3 cut(s) 56, 359, 418
AvaII GGWCC 2 cut(s) 372, 553
BaeGI GKGCMC 2 cut(s) 1176, 1413
BanI GGYRCC 1 cut(s) 1408
BanII GRGCYC 2 cut(s) 426, 975
BbsI GAAGAC 2 cut(s) 93, 1018
Bbv12I GWGCWC 4 cut(s) 651, 975, 1176, 1366
BbvI GCAGC 5 cut(s) 779, 791, 794, 860, 1202
BccI CCATC 3 cut(s) 425, 949, 1217
BceAI ACGGC 1 cut(s) 1074
BciT130I CCWGG 4 cut(s) 659, 753, 856, 1280
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 2 cut(s) 370, 398
BcoDI GTCTC 2 cut(s) 71, 362
BfaI CTAG 1 cut(s) 728
BglII AGATCT 1 cut(s) 877
BisI GCNGC 7 cut(s) 289, 768, 780, 783, 849, 1062, 1216
BlsI GCNGC 7 cut(s) 290, 769, 781, 784, 850, 1063, 1217
Bme1390I CCNGG 6 cut(s) 370, 398, 659, 753, 856, 1280
Bme18I GGWCC 2 cut(s) 372, 553
BmeT110I CYCGRG 3 cut(s) 56, 359, 418
BmgT120I GGNCC 4 cut(s) 372, 553, 914, 1289
BmiI GGNNCC 3 cut(s) 425, 554, 1410
BmrFI CCNGG 6 cut(s) 370, 398, 659, 753, 856, 1280
BmsI GCATC 3 cut(s) 463, 800, 1192
BoxI GACNNNNGTC 1 cut(s) 354
BpiI GAAGAC 2 cut(s) 93, 1018
BplI GAGNNNNNCTC 2 cut(s) 709, 741
BpmI CTGGAG 3 cut(s) 894, 952, 983
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 2 cut(s) 370, 398
BsaAI YACGTR 1 cut(s) 1105
BsaBI GATNNNNATC 1 cut(s) 1254
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 751, 1278
BsaWI WCCGGW 1 cut(s) 1195
Bse1I ACTGG 3 cut(s) 877, 935, 1216
Bse8I GATNNNNATC 1 cut(s) 1254
BseBI CCWGG 4 cut(s) 659, 753, 856, 1280
BseDI CCNNGG 2 cut(s) 751, 1278
BseGI GGATG 2 cut(s) 471, 631
BseJI GATNNNNATC 1 cut(s) 1254
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 3 cut(s) 877, 935, 1216
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 2 cut(s) 1176, 1413
BseX3I CGGCCG 1 cut(s) 1059
BseXI GCAGC 5 cut(s) 779, 791, 794, 860, 1202
BseYI CCCAGC 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 1062
BshFI GGCC 5 cut(s) 35, 724, 916, 1061, 1290
BshNI GGYRCC 1 cut(s) 1408
BsiEI CGRYCG 1 cut(s) 1062
BsiHKAI GWGCWC 4 cut(s) 651, 975, 1176, 1366
BsiHKCI CYCGRG 3 cut(s) 56, 359, 418
BsiSI CCGG 3 cut(s) 370, 397, 1196
BslFI GGGAC 1 cut(s) 566
BsmAI GTCTC 2 cut(s) 71, 362
BsmFI GGGAC 1 cut(s) 566
BsnI GGCC 5 cut(s) 35, 724, 916, 1061, 1290
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 3 cut(s) 56, 359, 418
Bsp1286I GDGCHC 6 cut(s) 426, 651, 975, 1176, 1366, 1413
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
BspACI CCGC 4 cut(s) 254, 289, 326, 1062
BspANI GGCC 5 cut(s) 35, 724, 916, 1061, 1290
BspCNI CTCAG 1 cut(s) 365
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 3 cut(s) 425, 554, 1410
BspPI GGATC 4 cut(s) 614, 662, 1192, 1244
BspT107I GGYRCC 1 cut(s) 1408
BspTNI GGTCTC 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 3 cut(s) 877, 935, 1216
BssECI CCNNGG 2 cut(s) 751, 1278
BssMI GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
Bst2UI CCWGG 4 cut(s) 659, 753, 856, 1280
Bst4CI ACNGT 3 cut(s) 97, 523, 1082
Bst6I CTCTTC 1 cut(s) 823
BstAUI TGTACA 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 1105
BstDEI CTNAG 3 cut(s) 312, 352, 1390
BstF5I GGATG 2 cut(s) 471, 631
BstFNI CGCG 1 cut(s) 404
BstKTI GATC 8 cut(s) 484, 609, 624, 670, 880, 997, 1187, 1252
BstMAI GTCTC 2 cut(s) 71, 362
BstMBI GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
BstMCI CGRYCG 1 cut(s) 1062
BstMWI GCNNNNNNNGC 5 cut(s) 294, 515, 776, 788, 1274
BstNI CCWGG 4 cut(s) 659, 753, 856, 1280
BstPAI GACNNNNGTC 1 cut(s) 354
BstSCI CCNGG 6 cut(s) 368, 396, 657, 751, 854, 1278
BstSLI GKGCMC 2 cut(s) 1176, 1413
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 5 cut(s) 779, 791, 794, 860, 1202
BstV2I GAAGAC 2 cut(s) 93, 1018
BstX2I RGATCY 2 cut(s) 877, 1184
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 2 cut(s) 877, 1184
BstZI CGGCCG 1 cut(s) 1059
BsuRI GGCC 5 cut(s) 35, 724, 916, 1061, 1290
BtsCI GGATG 2 cut(s) 471, 631
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 5 cut(s) 102, 513, 596, 609, 1209
CaiI CAGNNNCTG 1 cut(s) 1211
Cfr13I GGNCC 4 cut(s) 372, 553, 914, 1289
Csp6I GTAC 3 cut(s) 139, 1006, 1240
CspCI CAANNNNNGTGG 2 cut(s) 671, 706
CviAII CATG 5 cut(s) 71, 584, 590, 709, 866
CviQI GTAC 3 cut(s) 139, 1006, 1240
DdeI CTNAG 3 cut(s) 312, 352, 1390
DpnI GATC 8 cut(s) 483, 608, 623, 669, 879, 996, 1186, 1251
DpnII GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
DraI TTTAAA 3 cut(s) 114, 489, 1231
EaeI YGGCCR 1 cut(s) 1059
EagI CGGCCG 1 cut(s) 1059
Eam1104I CTCTTC 1 cut(s) 823
EarI CTCTTC 1 cut(s) 823
Ecl136II GAGCTC 1 cut(s) 973
EclXI CGGCCG 1 cut(s) 1059
Eco147I AGGCCT 1 cut(s) 724
Eco24I GRGCYC 2 cut(s) 426, 975
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 372, 553
Eco52I CGGCCG 1 cut(s) 1059
Eco53kI GAGCTC 1 cut(s) 973
Eco57I CTGAAG 3 cut(s) 6, 620, 804
Eco88I CYCGRG 3 cut(s) 56, 359, 418
EcoICRI GAGCTC 1 cut(s) 973
EcoRII CCWGG 4 cut(s) 657, 751, 854, 1278
EcoT22I ATGCAT 1 cut(s) 1317
EcoT38I GRGCYC 2 cut(s) 426, 975
FaeI CATG 5 cut(s) 74, 587, 593, 712, 869
FalI AAGNNNNNCTT 4 cut(s) 928, 960, 1013, 1045
FaqI GGGAC 1 cut(s) 566
FatI CATG 5 cut(s) 70, 583, 589, 708, 865
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 7 cut(s) 289, 768, 780, 783, 849, 1062, 1216
FokI GGATG 2 cut(s) 478, 618
FriOI GRGCYC 2 cut(s) 426, 975
Fsp4HI GCNGC 7 cut(s) 289, 768, 780, 783, 849, 1062, 1216
FspBI CTAG 1 cut(s) 728
GluI GCNGC 7 cut(s) 289, 768, 780, 783, 849, 1062, 1216
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 3 cut(s) 894, 952, 983
HaeIII GGCC 5 cut(s) 35, 724, 916, 1061, 1290
HapII CCGG 3 cut(s) 370, 397, 1196
Hin1II CATG 5 cut(s) 74, 587, 593, 712, 869
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HindIII AAGCTT 1 cut(s) 217
HinfI GANTC 9 cut(s) 4, 26, 59, 231, 350, 416, 593, 1049, 1255
HpaII CCGG 3 cut(s) 370, 397, 1196
HphI GGTGA 5 cut(s) 359, 491, 580, 677, 1352
Hpy166II GTNNAC 4 cut(s) 366, 1037, 1174, 1343
Hpy188I TCNGA 4 cut(s) 25, 1122, 1254, 1299
Hpy188III TCNNGA 6 cut(s) 542, 671, 822, 881, 1000, 1321
Hpy8I GTNNAC 4 cut(s) 366, 1037, 1174, 1343
Hpy99I CGWCG 1 cut(s) 288
HpyAV CCTTC 3 cut(s) 198, 645, 714
HpyCH4III ACNGT 3 cut(s) 97, 523, 1082
HpyCH4IV ACGT 3 cut(s) 11, 127, 1104
HpyF10VI GCNNNNNNNGC 5 cut(s) 294, 515, 776, 788, 1274
HpyF3I CTNAG 3 cut(s) 312, 352, 1390
HpySE526I ACGT 3 cut(s) 11, 127, 1104
Hsp92II CATG 5 cut(s) 74, 587, 593, 712, 869
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
LmnI GCTCC 2 cut(s) 429, 978
Lsp1109I GCAGC 5 cut(s) 779, 791, 794, 860, 1202
LweI GCATC 3 cut(s) 463, 800, 1192
MaeI CTAG 1 cut(s) 728
MaeII ACGT 3 cut(s) 11, 127, 1104
MaeIII GTNAC 4 cut(s) 265, 347, 898, 1154
MalI GATC 8 cut(s) 483, 608, 623, 669, 879, 996, 1186, 1251
MboI GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
MfeI CAATTG 2 cut(s) 575, 685
MflI RGATCY 2 cut(s) 877, 1184
MhlI GDGCHC 6 cut(s) 426, 651, 975, 1176, 1366, 1413
MluCI AATT 8 cut(s) 160, 259, 575, 674, 685, 1099, 1191, 1327
MlyI GAGTC 5 cut(s) 68, 240, 344, 410, 587
MmeI TCCRAC 1 cut(s) 429
Mph1103I ATGCAT 1 cut(s) 1317
MseI TTAA 4 cut(s) 113, 258, 488, 1230
MslI CAYNNNNRTG 2 cut(s) 588, 601
MspA1I CMGCKG 1 cut(s) 291
MspI CCGG 3 cut(s) 370, 397, 1196
MspR9I CCNGG 6 cut(s) 370, 398, 659, 753, 856, 1280
MunI CAATTG 2 cut(s) 575, 685
MvaI CCWGG 4 cut(s) 659, 753, 856, 1280
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 5 cut(s) 294, 515, 776, 788, 1274
NciI CCSGG 2 cut(s) 370, 398
NdeII GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
NlaIII CATG 5 cut(s) 74, 587, 593, 712, 869
NlaIV GGNNCC 3 cut(s) 425, 554, 1410
NmuCI GTSAC 2 cut(s) 347, 898
NsiI ATGCAT 1 cut(s) 1317
OliI CACNNNNGTG 1 cut(s) 601
PaeR7I CTCGAG 1 cut(s) 56
PceI AGGCCT 1 cut(s) 724
PfeI GAWTC 4 cut(s) 4, 26, 1049, 1255
PkrI GCNGC 7 cut(s) 290, 769, 781, 784, 850, 1063, 1217
PleI GAGTC 5 cut(s) 67, 239, 344, 410, 587
PpsI GAGTC 5 cut(s) 67, 239, 344, 410, 587
Ppu21I YACGTR 1 cut(s) 1105
PshAI GACNNNNGTC 1 cut(s) 354
PsiI TTATAA 2 cut(s) 1356, 1423
Psp124BI GAGCTC 1 cut(s) 975
Psp6I CCWGG 4 cut(s) 657, 751, 854, 1278
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 4 cut(s) 657, 751, 854, 1278
PspN4I GGNNCC 3 cut(s) 425, 554, 1410
PspPI GGNCC 4 cut(s) 372, 553, 914, 1289
PspXI VCTCGAGB 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 1211
PsuI RGATCY 2 cut(s) 877, 1184
RsaI GTAC 3 cut(s) 140, 1007, 1241
RsaNI GTAC 3 cut(s) 139, 1006, 1240
RseI CAYNNNNRTG 2 cut(s) 588, 601
SacI GAGCTC 1 cut(s) 975
SalI GTCGAC 1 cut(s) 364
SaqAI TTAA 4 cut(s) 113, 258, 488, 1230
SatI GCNGC 7 cut(s) 289, 768, 780, 783, 849, 1062, 1216
Sau3AI GATC 8 cut(s) 481, 606, 621, 667, 877, 994, 1184, 1249
Sau96I GGNCC 4 cut(s) 372, 553, 914, 1289
SchI GAGTC 5 cut(s) 68, 240, 344, 410, 587
ScrFI CCNGG 6 cut(s) 370, 398, 659, 753, 856, 1280
SduI GDGCHC 6 cut(s) 426, 651, 975, 1176, 1366, 1413
SfaNI GCATC 3 cut(s) 463, 800, 1192
Sfr274I CTCGAG 1 cut(s) 56
SinI GGWCC 2 cut(s) 372, 553
SlaI CTCGAG 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 588, 601
SmlI CTYRAG 2 cut(s) 56, 890
SmoI CTYRAG 2 cut(s) 56, 890
Sse9I AATT 8 cut(s) 160, 259, 575, 674, 685, 1099, 1191, 1327
SseBI AGGCCT 1 cut(s) 724
SsiI CCGC 4 cut(s) 254, 289, 326, 1062
SspMI CTAG 1 cut(s) 728
SstI GAGCTC 1 cut(s) 975
StuI AGGCCT 1 cut(s) 724
StyD4I CCNGG 6 cut(s) 368, 396, 657, 751, 854, 1278
TaaI ACNGT 3 cut(s) 97, 523, 1082
TaiI ACGT 3 cut(s) 14, 130, 1107
TaqI TCGA 3 cut(s) 57, 234, 365
TaqII GACCGA 1 cut(s) 917
TasI AATT 8 cut(s) 160, 259, 575, 674, 685, 1099, 1191, 1327
TatI WGTACW 2 cut(s) 138, 1239
TauI GCSGC 2 cut(s) 291, 1064
TfiI GAWTC 4 cut(s) 4, 26, 1049, 1255
Tru1I TTAA 4 cut(s) 113, 258, 488, 1230
Tru9I TTAA 4 cut(s) 113, 258, 488, 1230
TscAI CASTG 5 cut(s) 102, 520, 603, 616, 1216
TseFI GTSAC 2 cut(s) 347, 898
TseI GCWGC 5 cut(s) 767, 779, 782, 848, 1215
Tsp45I GTSAC 2 cut(s) 347, 898
TspDTI ATGAA 4 cut(s) 17, 404, 575, 1139
TspRI CASTG 5 cut(s) 102, 520, 603, 616, 1216
VneI GTGCAC 1 cut(s) 1172
VpaK11BI GGWCC 2 cut(s) 372, 553
XapI RAATTY 1 cut(s) 160
XhoI CTCGAG 1 cut(s) 56
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 1 cut(s) 728
Zsp2I ATGCAT 1 cut(s) 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.