Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327967.1

Orthogroup ID

OG0001649

Physical Location & Seq

Genomic Coordinates Forward (+)

41 .. 967

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atggtttggtttgttttggtagcgggtaagttggtggataacaagatttcgtggcgaggcgattcgggtttgaatgatgggagcgatgcgaaattggacttgtctaaaggaatgtacgacgccggagatcacatgaagtttggtcttccgatggcgttcactgcctcggtgttgtcgtggtcgattctcgagtatggtgatcatctggataaggtggatcagttagaagaggctcaagattcgcttaagtggatcactgactttcttgtcaatgctcatcctaaggacaatgtgctctacattcaggtgggtgaccctaaagcggaccacaagtgttggaataggcctgaagacatgactgagaagaggccactcacccaggtgaacacatctgctccggggactgaggttgctgccgaaaccgctgctgctatggcttcggcatctctggtgtttaagaagagcaatcccacgtattcagacagtcttcttaagcatgccaagcagttatttacttttgccaacgaaaatagagggtcttacagtgagagcatccccgatgttcaggagttttacaattccacagggtatggagatgagcttctgtgggcagccggatggctttatcatgcaactggggataagacttacctcgacttcgtgacaggggatggacaagagtttgctgaatttgataagccatcgtggttcagttgggataacaaacttgcaggagcccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

247

Amino Acids

27.51

Weight (kDa)

4.69

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19940 AT1G19940 AT1G19940 AT1G75680
fragaria_vesca	FvH4_1g11950 FvH4_1g11950 FvH4_1g11950 FvH4_1g11950 FvH4_1g11950 FvH4_2g38670
malus_domestica	MD08G1014300.v1.1 MD15G1013700.v1.1 MD15G1246400.v1.1
prunus_persica	Prupe.1G367400_v2.0.a1 Prupe.7G167300_v2.0.a1
pyrus_communis	pycom08g01290 pycom15g01190 pycom15g21680
rosa_chinensis	RchiOBHm_Chr2g0099551 RchiOBHm_Chr2g0099561 RchiOBHm_Chr2g0099571 RchiOBHm_Chr6g0302641
rosa_laevigata	RLG00000011152 RLG00000016892
rosa_multiflora	Rmu_co8327967.1_g000001 Rmu_sc0005120.1_g000001 Rmu_sc0005120.1_g000003 Rmu_sc0005455.1_g000004 Rmu_sc0017900.1_g000011
rosa_roxburghii	Rroxscaffold_2G00142970 Rroxscaffold_7G00165480
rosa_rugosa	Rorug02G0080700 Rorug06G0315700
rosa_samantha	Rh2AG130500 Rh2AG130600 Rh2BG133600 Rh2BG133700 Rh2CG134300 Rh2CG134500 Rh2DG134600 Rh2DG134700 Rh2DG134900 Rh6AG429000 Rh6BG473500 Rh6CG441300 Rh6DG428100
rosa_wichuraiana	Rw2G010070 Rw2G010080 Rw6G037130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AciI	CCGC	3 cut(s)	23, 323, 423
AclWI	GGATC	2 cut(s)	225, 260
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	322
AflII	CTTAAG	2 cut(s)	245, 491
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	378
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	1 cut(s)	601
AluI	AGCT	1 cut(s)	601
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	225, 260
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	344, 368
ApeKI	GCWGC	4 cut(s)	413, 425, 428, 611
ApoI	RAATTY	1 cut(s)	689
AspS9I	GGNCC	1 cut(s)	325
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	4 cut(s)	209, 323, 367, 394
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	739
BbsI	GAAGAC	3 cut(s)	137, 357, 479
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	4 cut(s)	400, 412, 415, 623
BccI	CCATC	5 cut(s)	71, 145, 612, 665, 709
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	399
BfrI	CTTAAG	2 cut(s)	245, 491
BisI	GCNGC	4 cut(s)	414, 426, 429, 612
BlsI	GCNGC	4 cut(s)	415, 427, 430, 613
Bme1390I	CCNGG	2 cut(s)	380, 399
Bme18I	GGWCC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	736
BmrFI	CCNGG	2 cut(s)	380, 399
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	3 cut(s)	76, 452, 561
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	3 cut(s)	137, 357, 479
BpuEI	CTTGAG	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	165, 378, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	640
Bse21I	CCTNAGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	3 cut(s)	165, 378, 398
BseGI	GGATG	4 cut(s)	277, 552, 623, 676
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	351, 396
BseNI	ACTGG	1 cut(s)	640
BseXI	GCAGC	4 cut(s)	400, 412, 415, 623
BshFI	GGCC	2 cut(s)	346, 370
BsiHKAI	GWGCWC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	123, 398, 615
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	346, 370
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	297, 739
Bsp143I	GATC	4 cut(s)	127, 199, 217, 252
BspACI	CCGC	3 cut(s)	23, 323, 423
BspANI	GGCC	2 cut(s)	346, 370
BspCNI	CTCAG	2 cut(s)	352, 397
BspLI	GGNNCC	1 cut(s)	736
BspPI	GGATC	2 cut(s)	225, 260
BspQI	GCTCTTC	1 cut(s)	455
BspTI	CTTAAG	2 cut(s)	245, 491
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	3 cut(s)	165, 378, 398
BssMI	GATC	4 cut(s)	127, 199, 217, 252
BssNI	GRCGYC	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	485, 545
Bst6I	CTCTTC	3 cut(s)	222, 359, 455
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	2 cut(s)	245, 491
BstBAI	YACGTR	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	3 cut(s)	282, 360, 405
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	4 cut(s)	277, 552, 623, 676
BstKTI	GATC	4 cut(s)	130, 202, 220, 255
BstMBI	GATC	4 cut(s)	127, 199, 217, 252
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 422, 434, 502
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	378, 397
BstV1I	GCAGC	4 cut(s)	400, 412, 415, 623
BstV2I	GAAGAC	3 cut(s)	137, 357, 479
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	346, 370
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	277, 552, 623, 676
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	3 cut(s)	159, 255, 550
Cac8I	GCNNGC	1 cut(s)	498
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	317, 352
CviAII	CATG	4 cut(s)	133, 355, 497, 629
CviJI	RGCY	9 cut(s)	233, 346, 370, 437, 601, 614, 622, 700, 737
CviKI_1	RGCY	9 cut(s)	233, 346, 370, 437, 601, 614, 622, 700, 737
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	282, 360, 405
DpnI	GATC	4 cut(s)	129, 201, 219, 254
DpnII	GATC	4 cut(s)	127, 199, 217, 252
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eam1104I	CTCTTC	3 cut(s)	222, 359, 455
EarI	CTCTTC	3 cut(s)	222, 359, 455
Eco147I	AGGCCT	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	739
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	188
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	739
FaeI	CATG	4 cut(s)	136, 358, 500, 632
FaiI	YATR	7 cut(s)	134, 195, 356, 434, 498, 591, 630
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	4 cut(s)	132, 354, 496, 628
FauI	CCCGC	1 cut(s)	16
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	414, 426, 429, 612
FokI	GGATG	4 cut(s)	264, 539, 630, 683
FriOI	GRGCYC	1 cut(s)	739
Fsp4HI	GCNGC	4 cut(s)	414, 426, 429, 612
GluI	GCNGC	4 cut(s)	414, 426, 429, 612
HaeIII	GGCC	2 cut(s)	346, 370
HapII	CCGG	3 cut(s)	123, 398, 615
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	136, 358, 500, 632
HinfI	GANTC	3 cut(s)	62, 184, 239
HpaII	CCGG	3 cut(s)	123, 398, 615
HphI	GGTGA	4 cut(s)	209, 323, 367, 394
Hpy166II	GTNNAC	2 cut(s)	159, 385
Hpy188I	TCNGA	2 cut(s)	150, 481
Hpy188III	TCNNGA	5 cut(s)	188, 206, 236, 566, 661
Hpy8I	GTNNAC	2 cut(s)	159, 385
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	485, 545
HpyCH4IV	ACGT	1 cut(s)	473
HpyCH4V	TGCA	2 cut(s)	632, 731
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 422, 434, 502
HpyF3I	CTNAG	3 cut(s)	282, 360, 405
HpySE526I	ACGT	1 cut(s)	473
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	136, 358, 500, 632
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	127, 199, 217, 252
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	3 cut(s)	81, 400, 734
Lsp1109I	GCAGC	4 cut(s)	400, 412, 415, 623
LweI	GCATC	3 cut(s)	76, 452, 561
MaeII	ACGT	1 cut(s)	473
MaeIII	GTNAC	2 cut(s)	311, 661
MalI	GATC	4 cut(s)	129, 201, 219, 254
MboI	GATC	4 cut(s)	127, 199, 217, 252
MboII	GAAGA	6 cut(s)	137, 239, 362, 376, 472, 479
MhlI	GDGCHC	2 cut(s)	297, 739
MluCI	AATT	3 cut(s)	92, 577, 689
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	50, 175, 223, 360, 400, 527, 662
MseI	TTAA	3 cut(s)	246, 456, 492
MslI	CAYNNNNRTG	2 cut(s)	305, 380
MspA1I	CMGCKG	1 cut(s)	425
MspCI	CTTAAG	2 cut(s)	245, 491
MspI	CCGG	3 cut(s)	123, 398, 615
MspR9I	CCNGG	2 cut(s)	380, 399
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	4 cut(s)	161, 422, 434, 502
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	4 cut(s)	127, 199, 217, 252
NlaIII	CATG	4 cut(s)	136, 358, 500, 632
NlaIV	GGNNCC	1 cut(s)	736
NmuCI	GTSAC	2 cut(s)	311, 661
NspI	RCATGY	1 cut(s)	500
OliI	CACNNNNGTG	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	62, 184, 239
PkrI	GCNGC	4 cut(s)	415, 427, 430, 613
Ppu21I	YACGTR	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	378
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	736
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	305, 380
SapI	GCTCTTC	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	246, 456, 492
SatI	GCNGC	4 cut(s)	414, 426, 429, 612
Sau3AI	GATC	4 cut(s)	127, 199, 217, 252
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	380, 399
SduI	GDGCHC	2 cut(s)	297, 739
SetI	ASST	7 cut(s)	216, 309, 384, 411, 476, 603, 654
SfaNI	GCATC	3 cut(s)	76, 452, 561
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	305, 380
SmlI	CTYRAG	4 cut(s)	188, 234, 245, 491
SmoI	CTYRAG	4 cut(s)	188, 234, 245, 491
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	3 cut(s)	92, 577, 689
SseBI	AGGCCT	1 cut(s)	346
SsiI	CCGC	3 cut(s)	23, 323, 423
StuI	AGGCCT	1 cut(s)	346
StyD4I	CCNGG	2 cut(s)	378, 397
TaaI	ACNGT	2 cut(s)	485, 545
TaiI	ACGT	1 cut(s)	476
TaqI	TCGA	3 cut(s)	182, 189, 654
TasI	AATT	3 cut(s)	92, 577, 689
TfiI	GAWTC	3 cut(s)	62, 184, 239
Tru1I	TTAA	3 cut(s)	246, 456, 492
Tru9I	TTAA	3 cut(s)	246, 456, 492
TscAI	CASTG	3 cut(s)	166, 262, 550
TseFI	GTSAC	2 cut(s)	311, 661
TseI	GCWGC	4 cut(s)	413, 425, 428, 611
Tsp45I	GTSAC	2 cut(s)	311, 661
TspDTI	ATGAA	1 cut(s)	149
TspRI	CASTG	3 cut(s)	166, 262, 550
Vha464I	CTTAAG	2 cut(s)	245, 491
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	689
XceI	RCATGY	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.