Rh2DG134700

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001649
Physical Location & Seq
Forward (+)
11355721 .. 11356394
674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG134700.1

Sequence Viewer

Length: 525 bp
ATGACAGAGAGAAGGCCTCTAGTTCAAATCAACACATCTTTCCCAGGAACAGAAGTGGCAGCAGAAACAGCAGCAACTATAGCATCAACATATCTTGTTTTCAGGAAAATTGACTCCTCATACTCAAAATCGCTCCTCAAGCATGTCGAGCAGCTATTTAATTTTGCCGATACTTATAGAGGTTCTTATAGTGCCAGCATACCCCAAGTGCAGGGGTTCTATAACTCTTCAGGATATGCAGATGAGCTATTGTGGGCAGCTACCTGGCTCTACCATGCAACTGGAGATCTGGACTACCTCAAGTATGTGACCGAACAGAACGGGTCGGCATTTGCTAACTGGGGAAGTCCATCTTGGTTTAGTTGGGATGACAAGCATGCTGCAACTAAACACCAGCCAACTCCACAGAGTTCTGTTTGTCCCATTGTGGAGCAGGTTTTGATGTCCAGGATAAGTTTCTTCGGTGCAAAAGAGCTCCCTATGGCAGAGAACCTTGATCTCCAGATGTACCGAAAAACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

174

Amino Acids

19.6

Weight (kDa)

5.77

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 130 1.3e-41 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 3 cut(s) 43, 263, 446
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 4 cut(s) 154, 247, 260, 475
AluI AGCT 4 cut(s) 154, 247, 260, 475
Alw21I GWGCWC 1 cut(s) 477
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 5 cut(s) 59, 71, 151, 257, 380
BanII GRGCYC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 5 cut(s) 71, 83, 163, 269, 367
BccI CCATC 1 cut(s) 358
BciT130I CCWGG 3 cut(s) 45, 265, 448
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 424
BglII AGATCT 1 cut(s) 286
BisI GCNGC 5 cut(s) 60, 72, 152, 258, 381
BlsI GCNGC 5 cut(s) 61, 73, 153, 259, 382
Bme1390I CCNGG 3 cut(s) 45, 265, 448
BmrFI CCNGG 3 cut(s) 45, 265, 448
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 349
BplI GAGNNNNNCTC 1 cut(s) 33
BpmI CTGGAG 2 cut(s) 303, 485
BpuEI CTTGAG 2 cut(s) 122, 284
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 286, 344
BseBI CCWGG 3 cut(s) 45, 265, 448
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 1 cut(s) 211
BseNI ACTGG 2 cut(s) 286, 344
BseRI GAGGAG 2 cut(s) 106, 125
BseXI GCAGC 5 cut(s) 71, 83, 163, 269, 367
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 477
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 477
Bsp143I GATC 2 cut(s) 286, 496
BspANI GGCC 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 424
BsrI ACTGG 2 cut(s) 286, 344
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 2 cut(s) 286, 496
Bst2UI CCWGG 3 cut(s) 45, 265, 448
Bst6I CTCTTC 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 196, 378
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 2 cut(s) 289, 499
BstMBI GATC 2 cut(s) 286, 496
BstMWI GCNNNNNNNGC 4 cut(s) 68, 80, 139, 148
BstNI CCWGG 3 cut(s) 45, 265, 448
BstNSI RCATGY 2 cut(s) 146, 380
BstSCI CCNGG 3 cut(s) 43, 263, 446
BstSFI CTRYAG 1 cut(s) 78
BstV1I GCAGC 5 cut(s) 71, 83, 163, 269, 367
BstX2I RGATCY 1 cut(s) 286
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 196, 378
Csp6I GTAC 1 cut(s) 508
CviAII CATG 3 cut(s) 143, 275, 377
CviJI RGCY 7 cut(s) 16, 154, 247, 260, 268, 397, 475
CviKI_1 RGCY 7 cut(s) 16, 154, 247, 260, 268, 397, 475
CviQI GTAC 1 cut(s) 508
DpnI GATC 2 cut(s) 288, 498
DpnII GATC 2 cut(s) 286, 496
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 475
Eco147I AGGCCT 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 477
Eco53kI GAGCTC 1 cut(s) 475
Eco57I CTGAAG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 475
EcoRII CCWGG 3 cut(s) 43, 263, 446
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 3 cut(s) 146, 278, 380
FalI AAGNNNNNCTT 2 cut(s) 337, 369
FaqI GGGAC 1 cut(s) 405
FatI CATG 3 cut(s) 142, 274, 376
Fnu4HI GCNGC 5 cut(s) 60, 72, 152, 258, 381
FokI GGATG 1 cut(s) 380
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 5 cut(s) 60, 72, 152, 258, 381
FspBI CTAG 1 cut(s) 20
GluI GCNGC 5 cut(s) 60, 72, 152, 258, 381
GsuI CTGGAG 2 cut(s) 303, 485
HaeIII GGCC 1 cut(s) 16
Hin1II CATG 3 cut(s) 146, 278, 380
HinfI GANTC 1 cut(s) 113
Hpy188III TCNNGA 4 cut(s) 103, 231, 290, 502
HpyAV CCTTC 1 cut(s) 6
HpyCH4V TGCA 6 cut(s) 211, 239, 278, 383, 467, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 80, 139, 148
Hsp92II CATG 3 cut(s) 146, 278, 380
Kzo9I GATC 2 cut(s) 286, 496
LmnI GCTCC 3 cut(s) 138, 430, 480
Lsp1109I GCAGC 5 cut(s) 71, 83, 163, 269, 367
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 307
MalI GATC 2 cut(s) 288, 498
MboI GATC 2 cut(s) 286, 496
MboII GAAGA 2 cut(s) 219, 451
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 477
MluCI AATT 2 cut(s) 108, 160
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 5 cut(s) 27, 127, 146, 173, 308
MseI TTAA 1 cut(s) 159
MspR9I CCNGG 3 cut(s) 45, 265, 448
MvaI CCWGG 3 cut(s) 45, 265, 448
MwoI GCNNNNNNNGC 4 cut(s) 68, 80, 139, 148
NdeII GATC 2 cut(s) 286, 496
NlaIII CATG 3 cut(s) 146, 278, 380
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 2 cut(s) 146, 380
PaeI GCATGC 1 cut(s) 380
PceI AGGCCT 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 446
PkrI GCNGC 5 cut(s) 61, 73, 153, 259, 382
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 477
Psp6I CCWGG 3 cut(s) 43, 263, 446
PspGI CCWGG 3 cut(s) 43, 263, 446
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 60, 72, 152, 258, 381
Sau3AI GATC 2 cut(s) 286, 496
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 45, 265, 448
SduI GDGCHC 1 cut(s) 477
SetI ASST 9 cut(s) 156, 184, 249, 262, 266, 300, 438, 477, 495
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 137, 299
SmoI CTYRAG 2 cut(s) 137, 299
SphI GCATGC 1 cut(s) 380
Sse9I AATT 2 cut(s) 108, 160
SseBI AGGCCT 1 cut(s) 16
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 477
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 3 cut(s) 43, 263, 446
TaqI TCGA 1 cut(s) 147
TaqII GACCGA 1 cut(s) 326
TasI AATT 2 cut(s) 108, 160
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 5 cut(s) 59, 71, 151, 257, 380
Tsp45I GTSAC 1 cut(s) 307
XceI RCATGY 2 cut(s) 146, 380
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.