Rh2CG134500

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
11974330 .. 11976709
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG134500.1

Sequence Viewer

Length: 1170 bp
ATGGTGGAAGGAGAAGAAAAAGCTTATCACAGAGAGTCGAACACAAGCTGGGGTTGGCGGTTAATTCTGTTACTATATATATCTCTCGTTGCCGCAGCTGCTACCCTCACTCTGCTAAGAAACTTCAACCTCTACTTCCATTCAAGTCAGGTGACTCAGCTCTCGGCTCGACCCGGACCTGTAGTACAAAACTACGCCAACGCTCTTCAACTCGCCACCCAATTCTTCGACGCCCAAAAATCTGGGAAGCTGATGAAGAACCGGGTCGCGTGGAGAGGCGACTCGGGGCTCCAAGATGGGAGTGAGGAGGGGTTAGACTTATCAAAGGGGATGTATGATGCTGGTGATCTTTTAAAGTTTGGGTTTCCTATGGCTTTCACTGCAACAGTTTTGTCTTGGGCTATTCTTGAATATGGGGACCAAATGAAAGAGGTGAAGCAATTGGGTCATGCCCATGACTCGCTGAAGTGGATCACTGATTACTTGATCAATGCACATCCTTCCCCAAATGTGCTCTATATCCAGGTTTTGATGTCCAGGATAAGTTTCTTCGGTGCAAAAGAGCTCCTTATGGCAGAGAACCTTGATCTCCAGATGTACCGAAAAACTGCAGAGGTCTTCTTGTGTGGACTTATTCCTGATTCGCCTACGGCCGCACCTGACAGAACAGACAATGGTCTGATATGGGTGGAAGAATGGAACTGTCTACAACATGCTATGTCTTCAGCCTTTCTAGCAGTTCTCTATAGCGACTACATGGTTACGTCTCAGACTGAAATGCTGTATTGTGATGGGAAAATTTACAAGCCCGAAGATCTTCGTAGCTTCTCCATCTCTCAGGCAGATTATGCGTTGGGAAAAAATCCGATGAAGATGAGTTATCTTGTAGGGTATGGGGGTAACTACCCTCAACAAGTGCACCATAGGGGATCTTCAATTCCTGTTGATGCAGACACTGGCTGCAGAGATGGGTTTAAATGGCTGTACTCCCCCGATCCGAATCCAAATGTAGCTGTTGGTGCCCTGGTTGGTGGCCCTTTTCAGAATGATAGCTATATGGATATCAGGAACAATTCAAAGCAAGGTGAACCAAGCACTTACAATAGTGCTCTCATTGTTGCCCTACTCTCTGGCTTAGTTTCCACTTCTTCGGTGCCCAAGCACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

389

Amino Acids

43.25

Weight (kDa)

5.6

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 65 - 176 4.1e-42 Glycosyl hydrolase family 9
Glyco_hydro_9 PF00759 175 - 376 2.4e-47 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1168
AccB1I GGYRCC 2 cut(s) 1019, 1153
AccI GTMKAC 1 cut(s) 706
AccII CGCG 1 cut(s) 269
AciI CCGC 3 cut(s) 58, 93, 654
AclWI GGATC 3 cut(s) 479, 937, 989
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 1 cut(s) 798
AcuI CTGAAG 2 cut(s) 485, 708
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 3 cut(s) 186, 599, 986
AgsI TTSAA 6 cut(s) 127, 144, 209, 410, 936, 1077
AjnI CCWGG 3 cut(s) 522, 536, 1023
AluBI AGCT 9 cut(s) 23, 48, 98, 160, 250, 565, 825, 1013, 1053
AluI AGCT 9 cut(s) 23, 48, 98, 160, 250, 565, 825, 1013, 1053
Alw21I GWGCWC 4 cut(s) 516, 567, 921, 1111
Alw26I GTCTC 1 cut(s) 771
Alw44I GTGCAC 1 cut(s) 917
AlwI GGATC 3 cut(s) 479, 937, 989
AlwNI CAGNNNCTG 1 cut(s) 956
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 2 cut(s) 651, 1033
ApaLI GTGCAC 1 cut(s) 917
ApeKI GCWGC 3 cut(s) 95, 98, 960
ApoI RAATTY 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 816
AspS9I GGNCC 3 cut(s) 176, 418, 1034
AsuC2I CCSGG 2 cut(s) 174, 263
AsuHPI GGTGA 4 cut(s) 163, 356, 445, 1097
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 2 cut(s) 176, 418
BaeGI GKGCMC 3 cut(s) 921, 1024, 1158
BanI GGYRCC 2 cut(s) 1019, 1153
BanII GRGCYC 2 cut(s) 291, 567
BbsI GAAGAC 2 cut(s) 610, 714
Bbv12I GWGCWC 4 cut(s) 516, 567, 921, 1111
BbvI GCAGC 3 cut(s) 85, 107, 947
BccI CCATC 4 cut(s) 290, 785, 839, 962
BceAI ACGGC 1 cut(s) 666
BciT130I CCWGG 3 cut(s) 524, 538, 1025
BclI TGATCA 1 cut(s) 486
BcnI CCSGG 2 cut(s) 174, 263
BcoDI GTCTC 1 cut(s) 771
BfaI CTAG 1 cut(s) 734
BfmI CTRYAG 4 cut(s) 180, 609, 745, 961
BglII AGATCT 1 cut(s) 814
BisI GCNGC 5 cut(s) 93, 96, 99, 654, 961
BlsI GCNGC 5 cut(s) 94, 97, 100, 655, 962
Bme1390I CCNGG 5 cut(s) 174, 263, 524, 538, 1025
Bme18I GGWCC 2 cut(s) 176, 418
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 176, 418, 1034
BmiI GGNNCC 4 cut(s) 290, 419, 1021, 1155
BmrFI CCNGG 5 cut(s) 174, 263, 524, 538, 1025
BmsI GCATC 2 cut(s) 328, 937
BoxI GACNNNNGTC 1 cut(s) 675
BpiI GAAGAC 2 cut(s) 610, 714
BpmI CTGGAG 1 cut(s) 575
BpuMI CCSGG 2 cut(s) 174, 263
BsaBI GATNNNNATC 1 cut(s) 999
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 1023
Bse1I ACTGG 1 cut(s) 961
Bse8I GATNNNNATC 1 cut(s) 999
BseBI CCWGG 3 cut(s) 524, 538, 1025
BseDI CCNNGG 1 cut(s) 1023
BseGI GGATG 2 cut(s) 336, 496
BseJI GATNNNNATC 1 cut(s) 999
BseMII CTCAG 3 cut(s) 170, 782, 851
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 3 cut(s) 921, 1024, 1158
BseX3I CGGCCG 1 cut(s) 651
BseXI GCAGC 3 cut(s) 85, 107, 947
BseYI CCCAGC 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 269
Bsh1285I CGRYCG 1 cut(s) 654
BshFI GGCC 2 cut(s) 653, 1035
BshNI GGYRCC 2 cut(s) 1019, 1153
BsiEI CGRYCG 1 cut(s) 654
BsiHKAI GWGCWC 4 cut(s) 516, 567, 921, 1111
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 2 cut(s) 174, 262
BslFI GGGAC 1 cut(s) 431
BsmAI GTCTC 1 cut(s) 771
BsmBI CGTCTC 1 cut(s) 771
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 2 cut(s) 653, 1035
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 7 cut(s) 291, 516, 567, 921, 1024, 1111, 1158
Bsp143I GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
BspACI CCGC 3 cut(s) 58, 93, 654
BspANI GGCC 2 cut(s) 653, 1035
BspCNI CTCAG 3 cut(s) 169, 781, 850
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 4 cut(s) 290, 419, 1021, 1155
BspMAI CTGCAG 2 cut(s) 613, 965
BspPI GGATC 3 cut(s) 479, 937, 989
BspQI GCTCTTC 1 cut(s) 210
BspT107I GGYRCC 2 cut(s) 1019, 1153
BsrI ACTGG 1 cut(s) 961
BssECI CCNNGG 1 cut(s) 1023
BssMI GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 3 cut(s) 524, 538, 1025
Bst4CI ACNGT 2 cut(s) 388, 704
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 848
BstDEI CTNAG 5 cut(s) 116, 156, 768, 837, 1135
BstF5I GGATG 2 cut(s) 336, 496
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 7 cut(s) 349, 474, 489, 589, 817, 932, 997
BstMAI GTCTC 1 cut(s) 771
BstMBI GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
BstMCI CGRYCG 1 cut(s) 654
BstMWI GCNNNNNNNGC 5 cut(s) 98, 380, 734, 848, 1019
BstNI CCWGG 3 cut(s) 524, 538, 1025
BstNSI RCATGY 1 cut(s) 716
BstPAI GACNNNNGTC 1 cut(s) 675
BstSCI CCNGG 5 cut(s) 172, 261, 522, 536, 1023
BstSFI CTRYAG 4 cut(s) 180, 609, 745, 961
BstSLI GKGCMC 3 cut(s) 921, 1024, 1158
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 3 cut(s) 85, 107, 947
BstV2I GAAGAC 2 cut(s) 610, 714
BstX2I RGATCY 2 cut(s) 814, 929
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 2 cut(s) 814, 929
BstZI CGGCCG 1 cut(s) 651
BsuRI GGCC 2 cut(s) 653, 1035
BtsCI GGATG 2 cut(s) 336, 496
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 3 cut(s) 378, 474, 954
CaiI CAGNNNCTG 1 cut(s) 956
Cfr13I GGNCC 3 cut(s) 176, 418, 1034
CseI GACGC 1 cut(s) 239
Csp6I GTAC 3 cut(s) 185, 598, 985
CviAII CATG 4 cut(s) 449, 455, 713, 757
CviQI GTAC 3 cut(s) 185, 598, 985
DdeI CTNAG 5 cut(s) 116, 156, 768, 837, 1135
DpnI GATC 7 cut(s) 348, 473, 488, 588, 816, 931, 996
DpnII GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
DraI TTTAAA 2 cut(s) 354, 976
EaeI YGGCCR 1 cut(s) 651
EagI CGGCCG 1 cut(s) 651
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 565
EclXI CGGCCG 1 cut(s) 651
Eco24I GRGCYC 2 cut(s) 291, 567
Eco32I GATATC 1 cut(s) 1063
Eco47I GGWCC 2 cut(s) 176, 418
Eco52I CGGCCG 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 2 cut(s) 485, 708
Eco88I CYCGRG 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 565
EcoRII CCWGG 3 cut(s) 522, 536, 1023
EcoRV GATATC 1 cut(s) 1063
EcoT38I GRGCYC 2 cut(s) 291, 567
Esp3I CGTCTC 1 cut(s) 771
FaeI CATG 4 cut(s) 452, 458, 716, 760
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 1 cut(s) 431
FatI CATG 4 cut(s) 448, 454, 712, 756
FbaI TGATCA 1 cut(s) 486
FblI GTMKAC 1 cut(s) 706
Fnu4HI GCNGC 5 cut(s) 93, 96, 99, 654, 961
FokI GGATG 2 cut(s) 343, 483
FriOI GRGCYC 2 cut(s) 291, 567
Fsp4HI GCNGC 5 cut(s) 93, 96, 99, 654, 961
FspBI CTAG 1 cut(s) 734
GluI GCNGC 5 cut(s) 93, 96, 99, 654, 961
GsaI CCCAGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 575
HaeIII GGCC 2 cut(s) 653, 1035
HapII CCGG 2 cut(s) 174, 262
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 4 cut(s) 452, 458, 716, 760
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 6 cut(s) 35, 154, 281, 458, 641, 1000
HpaII CCGG 2 cut(s) 174, 262
HphI GGTGA 4 cut(s) 163, 356, 445, 1097
Hpy166II GTNNAC 4 cut(s) 629, 707, 919, 1088
Hpy188I TCNGA 5 cut(s) 681, 771, 867, 999, 1044
Hpy188III TCNNGA 4 cut(s) 407, 592, 638, 1066
Hpy8I GTNNAC 4 cut(s) 629, 707, 919, 1088
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 2 cut(s) 388, 704
HpyCH4IV ACGT 1 cut(s) 764
HpyCH4V TGCA 7 cut(s) 383, 494, 557, 611, 919, 950, 963
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 380, 734, 848, 1019
HpyF3I CTNAG 5 cut(s) 116, 156, 768, 837, 1135
HpySE526I ACGT 1 cut(s) 764
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 4 cut(s) 452, 458, 716, 760
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 2 cut(s) 294, 570
Lsp1109I GCAGC 3 cut(s) 85, 107, 947
LweI GCATC 2 cut(s) 328, 937
MaeI CTAG 1 cut(s) 734
MaeII ACGT 1 cut(s) 764
MaeIII GTNAC 4 cut(s) 69, 151, 760, 899
MalI GATC 7 cut(s) 348, 473, 488, 588, 816, 931, 996
MboI GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
MfeI CAATTG 1 cut(s) 440
MflI RGATCY 2 cut(s) 814, 929
MhlI GDGCHC 7 cut(s) 291, 516, 567, 921, 1024, 1111, 1158
MluCI AATT 6 cut(s) 63, 221, 440, 798, 936, 1072
MlyI GAGTC 4 cut(s) 44, 148, 275, 452
MnlI CCTC 8 cut(s) 116, 140, 269, 298, 301, 424, 607, 918
MroXI GAANNNNTTC 1 cut(s) 816
MseI TTAA 3 cut(s) 62, 353, 975
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 174, 262
MspR9I CCNGG 5 cut(s) 174, 263, 524, 538, 1025
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 3 cut(s) 524, 538, 1025
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 5 cut(s) 98, 380, 734, 848, 1019
NciI CCSGG 2 cut(s) 174, 263
NdeII GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
NlaIII CATG 4 cut(s) 452, 458, 716, 760
NlaIV GGNNCC 4 cut(s) 290, 419, 1021, 1155
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 151
NspI RCATGY 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 816
PfeI GAWTC 2 cut(s) 641, 1000
PfoI TCCNGGA 1 cut(s) 536
PkrI GCNGC 5 cut(s) 94, 97, 100, 655, 962
PleI GAGTC 4 cut(s) 43, 148, 275, 452
PpsI GAGTC 4 cut(s) 43, 148, 275, 452
PshAI GACNNNNGTC 1 cut(s) 675
PsiI TTATAA 1 cut(s) 1168
Psp124BI GAGCTC 1 cut(s) 567
Psp6I CCWGG 3 cut(s) 522, 536, 1023
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 3 cut(s) 522, 536, 1023
PspN4I GGNNCC 4 cut(s) 290, 419, 1021, 1155
PspPI GGNCC 3 cut(s) 176, 418, 1034
PstI CTGCAG 2 cut(s) 613, 965
PstNI CAGNNNCTG 1 cut(s) 956
PsuI RGATCY 2 cut(s) 814, 929
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 3 cut(s) 186, 599, 986
RsaNI GTAC 3 cut(s) 185, 598, 985
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 567
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 3 cut(s) 62, 353, 975
SatI GCNGC 5 cut(s) 93, 96, 99, 654, 961
Sau3AI GATC 7 cut(s) 346, 471, 486, 586, 814, 929, 994
Sau96I GGNCC 3 cut(s) 176, 418, 1034
SchI GAGTC 4 cut(s) 44, 148, 275, 452
ScrFI CCNGG 5 cut(s) 174, 263, 524, 538, 1025
SduI GDGCHC 7 cut(s) 291, 516, 567, 921, 1024, 1111, 1158
SfaNI GCATC 2 cut(s) 328, 937
SfcI CTRYAG 4 cut(s) 180, 609, 745, 961
SinI GGWCC 2 cut(s) 176, 418
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 6 cut(s) 63, 221, 440, 798, 936, 1072
SsiI CCGC 3 cut(s) 58, 93, 654
SspMI CTAG 1 cut(s) 734
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 5 cut(s) 172, 261, 522, 536, 1023
TaaI ACNGT 2 cut(s) 388, 704
TaiI ACGT 1 cut(s) 767
TaqI TCGA 3 cut(s) 38, 169, 228
TasI AATT 6 cut(s) 63, 221, 440, 798, 936, 1072
TatI WGTACW 2 cut(s) 184, 984
TauI GCSGC 2 cut(s) 95, 656
TfiI GAWTC 2 cut(s) 641, 1000
Tru1I TTAA 3 cut(s) 62, 353, 975
Tru9I TTAA 3 cut(s) 62, 353, 975
TscAI CASTG 3 cut(s) 385, 481, 961
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 3 cut(s) 95, 98, 960
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 3 cut(s) 269, 440, 884
TspRI CASTG 3 cut(s) 385, 481, 961
VneI GTGCAC 1 cut(s) 917
VpaK11BI GGWCC 2 cut(s) 176, 418
XapI RAATTY 1 cut(s) 798
XceI RCATGY 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 706
XmnI GAANNNNTTC 1 cut(s) 816
XspI CTAG 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.