Rh6AG429000

Glycosyl hydrolase family 9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001649
Physical Location & Seq
Reverse (-)
62070888 .. 62074315
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG429000.1

Sequence Viewer

Length: 999 bp
ATGGGAGCCAAATCGGACTCCAAGGGTTGCAAATGGTTGAGTTGGTTCATCGTCTTCGTCGTCTTGGCCATCATCGCCGGCGCCGTCGCTCTCGTCCTCATCAAAAAGAAGCAAAACGAGTCCGACAACGAGCCGGCTCCGGTCCCGGGCCCTCCCGGCCCCGTCACCGAGAAATACTCGGACGCCCTCAAAACCGCTATGCAATTCTTCGACATCCAAAAATCGGGTAAGTTGGTGGATAACAAGATTTCGTGGCGAGGCGATTCGGGTTTGAATGATGGGAGCGATGCGAAATTGGACTTGTCAAAAGGAATGTACGACGCCGGAGATCACATGAAGTTTGGTCTTCCGATGGCGTTCACTGCCTCGGTGTTGTCTTGGTCGATTCTCGAGTATGGTGATCATCTGGATAAGGTGGATCAGTTAGAAGAGGCTCAAGATTCGCTTAAGTGGATCACTGACTTTCTTGTCAATGCTCATCCTAAGGACAATGTGCTCTACATTCAGGTGGGTGACCCTAATGCGGACCACAAGTGTTGGAATAGGCCTGAAGACATGACTGAGAAGAGGCCACTCACCCAGGTGAACACATCTGCTCCGGGGACTGAGGTTGCTGCCGAAACCGCTGCTGCTATGGCTTCGGCATCTCTGGTGTTTAAGAAGAGCAATCCCACGTATTCAGACAGTCTTCTTAAGCATGCCAAGCAGTTATTTACTTTTGCCAACGAAAATAGAGGGTCTTACAGTGAGAGCATCCCCGATGTTCAGAAGTTTTACAATTCCACAGGGTATGGAGATGAGCTTCTGTGGGCAGCTGGATGGCTTTATCATGCAACTGGGGATAAGACTTACCTCGACTTCGTGACAGGGGATGATGGACAAGAGTTTGCTGAATTTGATAAGCCATCGTGGTTCAGTTGGGATAACAAGCTTGCAGGAGCCCAGGTATGCATAATCCTCCTTTTTAATTTGTGCCATTCTAATGGAATCAGCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

332

Amino Acids

36.58

Weight (kDa)

4.97

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 59 - 323 8.6e-104 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 3 cut(s) 195, 524, 624
AclWI GGATC 2 cut(s) 426, 461
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 893
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 3 cut(s) 81, 183, 321
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 3 cut(s) 146, 223, 523
AflII CTTAAG 2 cut(s) 446, 692
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 2 cut(s) 579, 942
AleI CACNNNNGTG 1 cut(s) 581
AluBI AGCT 3 cut(s) 802, 815, 931
AluI AGCT 3 cut(s) 802, 815, 931
Alw21I GWGCWC 1 cut(s) 498
AlwI GGATC 2 cut(s) 426, 461
Ama87I CYCGRG 2 cut(s) 145, 389
AoxI GGCC 5 cut(s) 66, 148, 157, 545, 569
ApaI GGGCCC 1 cut(s) 152
ApeKI GCWGC 4 cut(s) 614, 626, 629, 812
ApoI RAATTY 1 cut(s) 893
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 5 cut(s) 142, 148, 149, 158, 526
AsuC2I CCSGG 4 cut(s) 146, 147, 156, 600
AsuHPI GGTGA 5 cut(s) 157, 410, 524, 568, 595
AvaI CYCGRG 2 cut(s) 145, 389
AvaII GGWCC 2 cut(s) 142, 526
AxyI CCTNAGG 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 68
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 152, 943
BbsI GAAGAC 4 cut(s) 46, 338, 558, 680
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 4 cut(s) 601, 613, 616, 824
BccI CCATC 6 cut(s) 77, 272, 346, 813, 869, 913
BceAI ACGGC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 608, 642
BciT130I CCWGG 2 cut(s) 581, 944
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 4 cut(s) 146, 147, 156, 600
BfoI RGCGCY 1 cut(s) 84
BfrI CTTAAG 2 cut(s) 446, 692
BglI GCCNNNNNGGC 1 cut(s) 156
BisI GCNGC 4 cut(s) 615, 627, 630, 813
BlsI GCNGC 4 cut(s) 616, 628, 631, 814
Bme1390I CCNGG 6 cut(s) 146, 147, 156, 581, 600, 944
Bme18I GGWCC 2 cut(s) 142, 526
BmeT110I CYCGRG 2 cut(s) 145, 389
BmgT120I GGNCC 5 cut(s) 142, 148, 149, 158, 526
BmiI GGNNCC 7 cut(s) 7, 82, 138, 144, 150, 160, 940
BmrFI CCNGG 6 cut(s) 146, 147, 156, 581, 600, 944
BmrI ACTGGG 1 cut(s) 846
BmsI GCATC 3 cut(s) 277, 653, 762
BmuI ACTGGG 1 cut(s) 846
BpiI GAAGAC 4 cut(s) 46, 338, 558, 680
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpuEI CTTGAG 1 cut(s) 420
BpuMI CCSGG 4 cut(s) 146, 147, 156, 600
BsaAI YACGTR 1 cut(s) 675
BsaHI GRCGYC 3 cut(s) 81, 183, 321
BsaJI CCNNGG 6 cut(s) 21, 145, 366, 579, 599, 942
BsaWI WCCGGW 1 cut(s) 139
BsaXI ACNNNNNCTCC 4 cut(s) 580, 610, 930, 960
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 223, 523
Bse118I RCCGGY 2 cut(s) 77, 133
Bse1I ACTGG 1 cut(s) 841
Bse21I CCTNAGG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 581, 944
BseDI CCNNGG 6 cut(s) 21, 145, 366, 579, 599, 942
BseGI GGATG 5 cut(s) 213, 478, 753, 824, 877
BseLI CCNNNNNNNGG 3 cut(s) 146, 223, 523
BseMII CTCAG 2 cut(s) 552, 597
BseNI ACTGG 1 cut(s) 841
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 4 cut(s) 601, 613, 616, 824
BshFI GGCC 5 cut(s) 68, 150, 159, 547, 571
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 498
BsiHKCI CYCGRG 2 cut(s) 145, 389
BsiSI CCGG 7 cut(s) 78, 134, 140, 146, 156, 324, 599
BslFI GGGAC 2 cut(s) 128, 616
BslI CCNNNNNNNGG 3 cut(s) 146, 223, 523
BsmFI GGGAC 2 cut(s) 128, 616
BsnI GGCC 5 cut(s) 68, 150, 159, 547, 571
BsoBI CYCGRG 2 cut(s) 145, 389
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 3 cut(s) 152, 498, 943
Bsp143I GATC 4 cut(s) 328, 400, 418, 453
BspACI CCGC 3 cut(s) 195, 524, 624
BspANI GGCC 5 cut(s) 68, 150, 159, 547, 571
BspCNI CTCAG 2 cut(s) 553, 598
BspLI GGNNCC 7 cut(s) 7, 82, 138, 144, 150, 160, 940
BspPI GGATC 2 cut(s) 426, 461
BspQI GCTCTTC 1 cut(s) 656
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 2 cut(s) 446, 692
BsrFI RCCGGY 2 cut(s) 77, 133
BsrI ACTGG 1 cut(s) 841
BssAI RCCGGY 2 cut(s) 77, 133
BssECI CCNNGG 6 cut(s) 21, 145, 366, 579, 599, 942
BssMI GATC 4 cut(s) 328, 400, 418, 453
BssNI GRCGYC 3 cut(s) 81, 183, 321
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 581, 944
Bst4CI ACNGT 2 cut(s) 686, 746
Bst6I CTCTTC 3 cut(s) 423, 560, 656
BstACI GRCGYC 3 cut(s) 81, 183, 321
BstAFI CTTAAG 2 cut(s) 446, 692
BstBAI YACGTR 1 cut(s) 675
BstC8I GCNNGC 4 cut(s) 79, 135, 699, 933
BstDEI CTNAG 3 cut(s) 483, 561, 606
BstEII GGTNACC 1 cut(s) 512
BstF5I GGATG 5 cut(s) 213, 478, 753, 824, 877
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 4 cut(s) 331, 403, 421, 456
BstMBI GATC 4 cut(s) 328, 400, 418, 453
BstMWI GCNNNNNNNGC 6 cut(s) 74, 156, 362, 623, 635, 703
BstNI CCWGG 2 cut(s) 581, 944
BstNSI RCATGY 1 cut(s) 701
BstPI GGTNACC 1 cut(s) 512
BstSCI CCNGG 6 cut(s) 144, 145, 154, 579, 598, 942
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 4 cut(s) 601, 613, 616, 824
BstV2I GAAGAC 4 cut(s) 46, 338, 558, 680
BstXI CCANNNNNNTGG 1 cut(s) 983
Bsu36I CCTNAGG 1 cut(s) 483
BsuRI GGCC 5 cut(s) 68, 150, 159, 547, 571
BtgZI GCGATG 2 cut(s) 58, 300
BtsCI GGATG 5 cut(s) 213, 478, 753, 824, 877
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 3 cut(s) 360, 456, 751
Cac8I GCNNGC 4 cut(s) 79, 135, 699, 933
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 77, 133
Cfr13I GGNCC 5 cut(s) 142, 148, 149, 158, 526
Cfr9I CCCGGG 1 cut(s) 145
CseI GACGC 2 cut(s) 191, 329
Csp6I GTAC 1 cut(s) 316
CspCI CAANNNNNGTGG 2 cut(s) 518, 553
CviAII CATG 4 cut(s) 334, 556, 698, 830
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 483, 561, 606
DinI GGCGCC 1 cut(s) 82
DpnI GATC 4 cut(s) 330, 402, 420, 455
DpnII GATC 4 cut(s) 328, 400, 418, 453
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 3 cut(s) 423, 560, 656
EarI CTCTTC 3 cut(s) 423, 560, 656
Eco130I CCWWGG 1 cut(s) 21
Eco147I AGGCCT 1 cut(s) 547
Eco24I GRGCYC 2 cut(s) 152, 943
Eco47I GGWCC 2 cut(s) 142, 526
Eco57I CTGAAG 1 cut(s) 570
Eco81I CCTNAGG 1 cut(s) 483
Eco88I CYCGRG 2 cut(s) 145, 389
Eco91I GGTNACC 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 149
EcoO65I GGTNACC 1 cut(s) 512
EcoRII CCWGG 2 cut(s) 579, 942
EcoT14I CCWWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 953
EcoT38I GRGCYC 2 cut(s) 152, 943
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 4 cut(s) 337, 559, 701, 833
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 2 cut(s) 128, 616
FatI CATG 4 cut(s) 333, 555, 697, 829
FbaI TGATCA 1 cut(s) 400
Fnu4HI GCNGC 4 cut(s) 615, 627, 630, 813
FokI GGATG 5 cut(s) 200, 465, 740, 831, 884
FriOI GRGCYC 2 cut(s) 152, 943
Fsp4HI GCNGC 4 cut(s) 615, 627, 630, 813
GlaI GCGC 1 cut(s) 82
GluI GCNGC 4 cut(s) 615, 627, 630, 813
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 5 cut(s) 68, 150, 159, 547, 571
HapII CCGG 7 cut(s) 78, 134, 140, 146, 156, 324, 599
HgaI GACGC 2 cut(s) 191, 329
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 3 cut(s) 81, 183, 321
Hin1II CATG 4 cut(s) 337, 559, 701, 833
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 6 cut(s) 17, 119, 263, 385, 440, 987
HpaII CCGG 7 cut(s) 78, 134, 140, 146, 156, 324, 599
HphI GGTGA 5 cut(s) 157, 410, 524, 568, 595
Hpy166II GTNNAC 2 cut(s) 360, 586
Hpy188I TCNGA 6 cut(s) 16, 124, 181, 351, 682, 768
Hpy188III TCNNGA 4 cut(s) 389, 407, 437, 862
Hpy8I GTNNAC 2 cut(s) 360, 586
Hpy99I CGWCG 3 cut(s) 62, 89, 323
HpyCH4III ACNGT 2 cut(s) 686, 746
HpyCH4IV ACGT 1 cut(s) 674
HpyCH4V TGCA 5 cut(s) 30, 202, 833, 935, 951
HpyF10VI GCNNNNNNNGC 6 cut(s) 74, 156, 362, 623, 635, 703
HpyF3I CTNAG 3 cut(s) 483, 561, 606
HpySE526I ACGT 1 cut(s) 674
Hsp92I GRCGYC 3 cut(s) 81, 183, 321
Hsp92II CATG 4 cut(s) 337, 559, 701, 833
HspAI GCGC 1 cut(s) 81
KasI GGCGCC 1 cut(s) 80
KroI GCCGGC 2 cut(s) 77, 133
KroNI GCCGGC 2 cut(s) 79, 135
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 4 cut(s) 328, 400, 418, 453
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 5 cut(s) 5, 142, 282, 601, 938
Lsp1109I GCAGC 4 cut(s) 601, 613, 616, 824
LweI GCATC 3 cut(s) 277, 653, 762
MaeII ACGT 1 cut(s) 674
MaeIII GTNAC 3 cut(s) 163, 512, 862
MalI GATC 4 cut(s) 330, 402, 420, 455
MboI GATC 4 cut(s) 328, 400, 418, 453
MboII GAAGA 8 cut(s) 46, 199, 338, 440, 563, 577, 673, 680
MhlI GDGCHC 3 cut(s) 152, 498, 943
MlsI TGGCCA 1 cut(s) 68
MluCI AATT 5 cut(s) 203, 293, 778, 893, 967
MluNI TGGCCA 1 cut(s) 68
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 11, 128
MmeI TCCRAC 2 cut(s) 147, 518
Mox20I TGGCCA 1 cut(s) 68
Mph1103I ATGCAT 1 cut(s) 953
MreI CGCCGGCG 1 cut(s) 77
MroNI GCCGGC 2 cut(s) 77, 133
MscI TGGCCA 1 cut(s) 68
MseI TTAA 4 cut(s) 447, 657, 693, 966
MslI CAYNNNNRTG 3 cut(s) 506, 581, 981
Msp20I TGGCCA 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 626, 815
MspCI CTTAAG 2 cut(s) 446, 692
MspI CCGG 7 cut(s) 78, 134, 140, 146, 156, 324, 599
MspR9I CCNGG 6 cut(s) 146, 147, 156, 581, 600, 944
MvaI CCWGG 2 cut(s) 581, 944
MwoI GCNNNNNNNGC 6 cut(s) 74, 156, 362, 623, 635, 703
NaeI GCCGGC 2 cut(s) 79, 135
NarI GGCGCC 1 cut(s) 81
NciI CCSGG 4 cut(s) 146, 147, 156, 600
NdeII GATC 4 cut(s) 328, 400, 418, 453
NgoMIV GCCGGC 2 cut(s) 77, 133
NlaIII CATG 4 cut(s) 337, 559, 701, 833
NlaIV GGNNCC 7 cut(s) 7, 82, 138, 144, 150, 160, 940
NmuCI GTSAC 3 cut(s) 163, 512, 862
NsiI ATGCAT 1 cut(s) 953
NspI RCATGY 1 cut(s) 701
OliI CACNNNNGTG 1 cut(s) 581
PaeI GCATGC 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 389
PceI AGGCCT 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 81
PdiI GCCGGC 2 cut(s) 79, 135
PfeI GAWTC 4 cut(s) 263, 385, 440, 987
PkrI GCNGC 4 cut(s) 616, 628, 631, 814
PleI GAGTC 2 cut(s) 11, 127
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 2 cut(s) 11, 127
Ppu21I YACGTR 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 579, 942
PspEI GGTNACC 1 cut(s) 512
PspGI CCWGG 2 cut(s) 579, 942
PspN4I GGNNCC 7 cut(s) 7, 82, 138, 144, 150, 160, 940
PspOMI GGGCCC 1 cut(s) 148
PspPI GGNCC 5 cut(s) 142, 148, 149, 158, 526
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 3 cut(s) 506, 581, 981
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 4 cut(s) 447, 657, 693, 966
SatI GCNGC 4 cut(s) 615, 627, 630, 813
Sau3AI GATC 4 cut(s) 328, 400, 418, 453
Sau96I GGNCC 5 cut(s) 142, 148, 149, 158, 526
SchI GAGTC 2 cut(s) 11, 128
ScrFI CCNGG 6 cut(s) 146, 147, 156, 581, 600, 944
SduI GDGCHC 3 cut(s) 152, 498, 943
SfaNI GCATC 3 cut(s) 277, 653, 762
SfiI GGCCNNNNNGGCC 1 cut(s) 156
SfoI GGCGCC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 389
SgrAI CRCCGGYG 1 cut(s) 77
SinI GGWCC 2 cut(s) 142, 526
SlaI CTCGAG 1 cut(s) 389
SmaI CCCGGG 1 cut(s) 147
SmiMI CAYNNNNRTG 3 cut(s) 506, 581, 981
SmlI CTYRAG 4 cut(s) 389, 435, 446, 692
SmoI CTYRAG 4 cut(s) 389, 435, 446, 692
SphI GCATGC 1 cut(s) 701
Sse9I AATT 5 cut(s) 203, 293, 778, 893, 967
SseBI AGGCCT 1 cut(s) 547
SsiI CCGC 3 cut(s) 195, 524, 624
SspDI GGCGCC 1 cut(s) 80
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 6 cut(s) 144, 145, 154, 579, 598, 942
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 686, 746
TaiI ACGT 1 cut(s) 677
TaqI TCGA 4 cut(s) 210, 383, 390, 855
TasI AATT 5 cut(s) 203, 293, 778, 893, 967
TfiI GAWTC 4 cut(s) 263, 385, 440, 987
Tru1I TTAA 4 cut(s) 447, 657, 693, 966
Tru9I TTAA 4 cut(s) 447, 657, 693, 966
TscAI CASTG 3 cut(s) 367, 463, 751
TseFI GTSAC 3 cut(s) 163, 512, 862
TseI GCWGC 4 cut(s) 614, 626, 629, 812
Tsp45I GTSAC 3 cut(s) 163, 512, 862
TspDTI ATGAA 2 cut(s) 37, 350
TspMI CCCGGG 1 cut(s) 145
TspRI CASTG 3 cut(s) 367, 463, 751
Vha464I CTTAAG 2 cut(s) 446, 692
VpaK11BI GGWCC 2 cut(s) 142, 526
XapI RAATTY 1 cut(s) 893
XceI RCATGY 1 cut(s) 701
XhoI CTCGAG 1 cut(s) 389
XmaI CCCGGG 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.