Rh2DG134600

Belongs to the glycosyl hydrolase 9 (cellulase E) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001649
Physical Location & Seq
Forward (+)
11355075 .. 11355392
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG134600.1

Sequence Viewer

Length: 318 bp
ATGAAGAACCGGGTCGAGTGGAGAGGCGACTTGGGGCTCCAAGATGGGAGTGAGGAGGGGTTGGACTTATCAAAGGGGATGTATGATGCTGGTGATCTTTTAAAGTTTGTGTTTCCTATGGCTTTCATTGCAACAATTTTGTCTTGGGCTATTCTTGAATATGGGGACCAAATGAAAGAGGTGAAGCAATTGGGTCAAGCCCATGACTCGCTGAAGTGGATCACTGATTACTTGATCAATGCACATCCTTCCCCAAATGTGCTCTATATCCAGGTACTCATTGCTTGCAAAGTTACAGTCTTTACCTTCAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
Glyco_hydro_9

Protein Analysis

105

Amino Acids

11.94

Weight (kDa)

5.2

Isoelectric Point (pI)

32.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 3 - 92 1.9e-32 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 276
AgsI TTSAA 2 cut(s) 158, 310
AjnI CCWGG 1 cut(s) 270
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 311
ArsI GACNNNNNNTTYG 2 cut(s) 282, 314
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 11
AsuHPI GGTGA 2 cut(s) 104, 193
AvaII GGWCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 264
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 272
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 11, 272
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 2 cut(s) 38, 167
BmrFI CCNGG 2 cut(s) 11, 272
BmsI GCATC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 11
Bse3DI GCAATG 2 cut(s) 126, 279
BseBI CCWGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 84, 244
BseMI GCAATG 2 cut(s) 126, 279
BseRI GAGGAG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 39, 264
Bsp143I GATC 3 cut(s) 94, 219, 234
BspLI GGNNCC 2 cut(s) 38, 167
BspPI GGATC 1 cut(s) 227
BsrDI GCAATG 2 cut(s) 126, 279
BssMI GATC 3 cut(s) 94, 219, 234
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 286
BstF5I GGATG 2 cut(s) 84, 244
BstKTI GATC 3 cut(s) 97, 222, 237
BstMBI GATC 3 cut(s) 94, 219, 234
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 2 cut(s) 9, 270
BtsCI GGATG 2 cut(s) 84, 244
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 275
CviAII CATG 1 cut(s) 203
CviJI RGCY 4 cut(s) 37, 122, 149, 200
CviKI_1 RGCY 4 cut(s) 37, 122, 149, 200
CviQI GTAC 1 cut(s) 275
DpnI GATC 3 cut(s) 96, 221, 236
DpnII GATC 3 cut(s) 94, 219, 234
DraI TTTAAA 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 1 cut(s) 206
FaiI YATR 5 cut(s) 84, 119, 162, 204, 267
FaqI GGGAC 1 cut(s) 179
FatI CATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 234
FokI GGATG 2 cut(s) 91, 231
FriOI GRGCYC 1 cut(s) 39
HapII CCGG 1 cut(s) 10
Hin1II CATG 1 cut(s) 206
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 10
HphI GGTGA 2 cut(s) 104, 193
Hpy188III TCNNGA 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 258, 316
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 3 cut(s) 131, 242, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92II CATG 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 3 cut(s) 94, 219, 234
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 23, 75, 257, 284
LweI GCATC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 96, 221, 236
MboI GATC 3 cut(s) 94, 219, 234
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 1 cut(s) 188
MhlI GDGCHC 2 cut(s) 39, 264
MluCI AATT 3 cut(s) 135, 188, 311
MlyI GAGTC 1 cut(s) 200
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 17, 46, 49, 172
MseI TTAA 2 cut(s) 101, 316
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 11, 272
MunI CAATTG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 272
MwoI GCNNNNNNNGC 1 cut(s) 128
NciI CCSGG 1 cut(s) 11
NdeII GATC 3 cut(s) 94, 219, 234
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 2 cut(s) 38, 167
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 38, 167
PspPI GGNCC 1 cut(s) 166
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 101, 316
Sau3AI GATC 3 cut(s) 94, 219, 234
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 2 cut(s) 11, 272
SduI GDGCHC 2 cut(s) 39, 264
SetI ASST 3 cut(s) 183, 276, 308
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 166
Sse9I AATT 3 cut(s) 135, 188, 311
StyD4I CCNGG 2 cut(s) 9, 270
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 15
TasI AATT 3 cut(s) 135, 188, 311
Tru1I TTAA 2 cut(s) 101, 316
Tru9I TTAA 2 cut(s) 101, 316
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 3 cut(s) 17, 115, 188
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 166
XapI RAATTY 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.