Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003410

Physical Location & Seq

Genomic Coordinates Forward (+)

19819483 .. 19827337

Gene Structure 7855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGACCTCCATCACCTCCGTCGAGTTGAATTTCCTAGTGTTTCGTTACCTTCAGGAATCAGGCTTCACACACTCAGCTTTTGCTTTAGGATATGAGGCCGGTATCAACAAATGCACTATAGATGGAAATTTGGTTCCACCTGGTGCCCTCATTACATTTATACAAAAAGGACTTCAGTACTTGGAGATGGAAGCTAACTTGAGTAATAGTGATGCAGATTTGGATGAAGATTTCTCATTTTTACAACCTTTAGATCTTATCACAAAGGATGTAAATCAACTAAGGCAAATGATTACAGAGAAAAGGAAGAATTCACAGATGGACAAAGACAAAGATAAAGAGCACGAGTCTTATCAAAAGAAAGATAAAGATAAGGAGCTTGAAAAAGAACATGACGGAGAACGTGCACGAGTAAGAGAGAAAGAAAGAAAAGAAAGGGAGAAGGATTTCGAAAAGGATAGAGAGAGGATAGAAAAGAATAAGGAGCGAGAAAAGCAGCGTGAGGACCGCAATGACAGAGATGTAGTTAGAGATCAAGAAGATAAAGTTAGTATCAGACATGAAGAAAATGGAGCTTCTGGAGGAGCAGAACCAATGGATATTCCTCTTACAGATGTTCAAATCCCTAGTTCTGATGTGACAATTTTGGAGGGGCATACTAATGAGGTATGTGCTTGTGCATGGAGTCCAGCAGGTTCTCTTCTTGCATCGGGGTCTGGAGATTCGACGGCTCGAATCTGGACCATTGCTGATGGAAGCTCCAGATTTAGTTCACAAAATGGTTCCTCAAATGTGTTGGTGCTGAAGCATGTTAAGGGTAGAACAAATGAAAAGAGTAAAGATGTGACGACACTTGACTGGAATGGAGAGGGAACAATGCTTGCAACTGGTTCGTATGATGGGCAAGCAAGAATTTGGAGTACAAAGGGTGAATTAATTAGTACTTTGAGCAAACATAAAGGGCCTATATTCTCTCTAAAGTGGAACAAAAAGGGAGATTACCTTCTTACGGGAAGCTGCGATAAAACTGCAATTGTGTGGGATGTAAAGGCAGAGGAACCGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGACTGGCGCAACAATGTCTCCTTTGCAATGAGCTCAACAGACAATATGATATATGTCTGCAAGATTGGGGAAAACCACCCTGTTAAAACTTTTGCGGGACATCAGGGAGAAGTTAATTGTGTTAAATGGGATCCAACTGGTTCATTGTTGGCTTCATGTTCTGATGATAGCACTGCAAAGATATGGAGCATTAAGCAGGAAAAATATGTTCATGATTTAAGAGAGCATTCTAAGGAGATATACACTATCAGATGGAGTCCCACTGGACCAGGAACAAACAACCCTAACCAACAGTTGGTCCTAGCTAGTGCATCATTTGACTCCTTTGTGAAGCTATGGGATGTGGAACAAGGAAAGCTTCTCTGCAGCTTGGATGGACACAGGGAACCTGTTTATTCTGTTGCTTTTAGCCCAAATGGTGAGTATTTGGCCAGTGGATCGATCTTAATAAATCCATGCATATCTGGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000151 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0098732 GO:0140110 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04310 map04013 map04310

Pfam Domains

Protein Families

LisH WD40

Protein Analysis

526

Amino Acids

58.93

Weight (kDa)

5.41

Isoelectric Point (pI)

29.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	8 - 33	8.9e-08	LisH
WD40_CDC20-Fz	PF24807	182 - 259	1.8e-10	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	183 - 254	1e-06	WDHD1 first WD40 domain
Beta-prop_WDR3_1st	PF25173	200 - 256	4.1e-06	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	211 - 253	2.3e-08	WDR5 beta-propeller domain
WD40	PF00400	213 - 247	6.3e-10	WD domain, G-beta repeat
Beta-prop_EML	PF23409	214 - 384	5e-11	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	214 - 321	9.7e-10	CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3	PF25174	219 - 255	1.5e-06	THOC3 beta-propeller domain
Beta-prop_IFT140_1st	PF23383	270 - 350	1.8e-06	IFT140 first beta-propeller
Beta-prop_EML_2	PF23414	270 - 349	6.1e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19	PF24814	272 - 353	1.4e-10	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	275 - 380	7.7e-18	WDR5 beta-propeller domain
ANAPC4_WD40	PF12894	275 - 330	7e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR3_1st	PF25173	275 - 370	4.3e-16	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	277 - 513	1.5e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR19_1st	PF23389	277 - 356	1e-05	WDR19 first beta-propeller
Beta-prop_THOC3	PF25174	279 - 515	3.5e-47	THOC3 beta-propeller domain
WD40	PF00400	279 - 307	5.3e-06	WD domain, G-beta repeat
WD40_Gbeta	PF25391	279 - 436	2e-10	G protein beta WD-40 repeat protein
EIF3I	PF24805	279 - 384	6.7e-11	EIF3I
WD40_WDHD1_1st	PF24817	280 - 360	2e-11	WDHD1 first WD40 domain
WDR55	PF24796	280 - 447	7.8e-11	WDR55
Beta-prop_WDR3_2nd	PF25172	282 - 386	6.6e-06	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	283 - 457	1.1e-12	WDR36/Utp21 second beta-propeller domain
WD40	PF00400	310 - 348	3.7e-08	WD domain, G-beta repeat
WD40_CDC20-Fz	PF24807	313 - 513	3.5e-29	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	314 - 482	7.3e-12	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	315 - 393	7e-07	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	331 - 515	5.3e-31	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	336 - 455	7.8e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd	PF24782	336 - 509	7.6e-09	MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st	PF25173	372 - 515	6.5e-30	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	375 - 516	1.4e-32	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	376 - 445	6.6e-12	WDHD1 first WD40 domain
ANAPC4_WD40	PF12894	377 - 454	2.3e-08	Anaphase-promoting complex subunit 4 WD40 domain
WDR55	PF24796	379 - 513	7.2e-08	WDR55
EIF3I	PF24805	389 - 456	7.6e-06	EIF3I
WD40	PF00400	395 - 431	4.9e-12	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	396 - 515	3e-10	WDR3 second beta-propeller domain
Beta-prop_EML	PF23409	399 - 508	5.6e-07	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	400 - 515	2.6e-13	CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin	PF25460	405 - 457	1.4e-06	Aladin seven-bladed propeller
WDR90_beta-prop_4th	PF23342	406 - 514	1.9e-08	WDR90, 4th beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	412 - 514	8.9e-07	WDR90/POC16, second beta-propeller
WD40_WDHD1_1st	PF24817	467 - 515	3.4e-07	WDHD1 first WD40 domain
WD40	PF00400	486 - 515	5.9e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67320
fragaria_vesca	FvH4_1g16940 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540
malus_domestica	MD02G1179800.v1.1 MD15G1075300.v1.1 MD15G1290400.v1.1
prunus_persica	Prupe.1G428200_v2.0.a1 Prupe.1G428200_v2.0.a1 Prupe.6G226500_v2.0.a1 Prupe.6G226500_v2.0.a1
pyrus_communis	pycom02g14570 pycom15g07030 pycom15g25410
rosa_chinensis	RchiOBHm_Chr2g0107021 RchiOBHm_Chr6g0308951
rosa_laevigata	RLG00000010601 RLG00000017550
rosa_multiflora	Rmu_sc0007106.1_g000002 Rmu_sc0030997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136680 Rroxscaffold_7G00159780
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2AG190800 Rh2BG202300 Rh2CG195500 Rh2DG197800 Rh6AG481200 Rh6BG490300 Rh6CG495600 Rh6DG481500
rosa_wichuraiana	Rw2G015040 Rw6G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	1399
AciI	CCGC	2 cut(s)	508, 1199
AclWI	GGATC	3 cut(s)	1229, 1242, 1549
AcoI	YGGCCR	1 cut(s)	1533
AcsI	RAATTY	5 cut(s)	28, 127, 310, 912, 1076
AcuI	CTGAAG	3 cut(s)	35, 158, 824
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	3 cut(s)	179, 922, 943
AfiI	CCNNNNNNNGG	2 cut(s)	1009, 1399
AgsI	TTSAA	4 cut(s)	28, 383, 620, 1076
AjnI	CCWGG	2 cut(s)	139, 1372
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
Alw21I	GWGCWC	3 cut(s)	345, 409, 1139
Alw26I	GTCTC	1 cut(s)	1126
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	1229, 1242, 1549
AoxI	GGCC	3 cut(s)	96, 962, 1533
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	496, 1017, 1470
ApoI	RAATTY	5 cut(s)	28, 127, 310, 912, 1076
AseI	ATTAAT	1 cut(s)	935
Asp700I	GAANNNNTTC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	1113
AspS9I	GGNCC	6 cut(s)	505, 741, 962, 1088, 1370, 1402
AsuHPI	GGTGA	3 cut(s)	4, 941, 1535
AsuII	TTCGAA	1 cut(s)	450
AvaII	GGWCC	5 cut(s)	505, 741, 1088, 1370, 1402
BaeGI	GKGCMC	2 cut(s)	148, 409
BalI	TGGCCA	1 cut(s)	1535
BamHI	GGATCC	1 cut(s)	1234
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	1139
BauI	CACGAG	2 cut(s)	344, 408
Bbv12I	GWGCWC	3 cut(s)	345, 409, 1139
BbvI	GCAGC	3 cut(s)	508, 1004, 1482
BccI	CCATC	8 cut(s)	17, 116, 181, 313, 746, 893, 1350, 1472
BceAI	ACGGC	1 cut(s)	744
BcgI	CGANNNNNNTGC	4 cut(s)	873, 907, 1010, 1044
BciT130I	CCWGG	2 cut(s)	141, 1374
BcoDI	GTCTC	1 cut(s)	1126
BfaI	CTAG	4 cut(s)	35, 627, 1406, 1410
BfmI	CTRYAG	2 cut(s)	117, 1468
BfuAI	ACCTGC	1 cut(s)	683
BglII	AGATCT	1 cut(s)	253
BisI	GCNGC	3 cut(s)	497, 1018, 1471
BlsI	GCNGC	3 cut(s)	498, 1019, 1472
BmcAI	AGTACT	2 cut(s)	179, 943
Bme1390I	CCNGG	2 cut(s)	141, 1374
Bme18I	GGWCC	5 cut(s)	505, 741, 1088, 1370, 1402
BmgT120I	GGNCC	6 cut(s)	505, 741, 962, 1088, 1370, 1402
BmiI	GGNNCC	6 cut(s)	135, 145, 784, 1059, 1236, 1491
BmrFI	CCNGG	2 cut(s)	141, 1374
BmsI	GCATC	3 cut(s)	202, 716, 1424
BpmI	CTGGAG	3 cut(s)	600, 738, 745
Bpu14I	TTCGAA	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	1544
BsaBI	GATNNNNATC	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	1106, 1136
Bsc4I	CCNNNNNNNGG	2 cut(s)	1009, 1399
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	6 cut(s)	863, 892, 1112, 1246, 1372, 1536
Bse3DI	GCAATG	3 cut(s)	517, 744, 1137
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	141, 1374
BseCI	ATCGAT	1 cut(s)	1544
BseGI	GGATG	5 cut(s)	229, 274, 1048, 1450, 1483
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	1009, 1399
BseMI	GCAATG	3 cut(s)	517, 744, 1137
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	6 cut(s)	863, 892, 1112, 1246, 1372, 1536
BseRI	GAGGAG	1 cut(s)	597
BseSI	GKGCMC	2 cut(s)	148, 409
BseXI	GCAGC	3 cut(s)	508, 1004, 1482
BshFI	GGCC	3 cut(s)	98, 964, 1535
BshNI	GGYRCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	1544
BsiHKAI	GWGCWC	3 cut(s)	345, 409, 1139
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	1215, 1347
BslI	CCNNNNNNNGG	2 cut(s)	1009, 1399
BsmAI	GTCTC	1 cut(s)	1126
BsmFI	GGGAC	2 cut(s)	1215, 1347
BsmI	GAATGC	1 cut(s)	1330
BsnI	GGCC	3 cut(s)	98, 964, 1535
Bsp119I	TTCGAA	1 cut(s)	450
Bsp1286I	GDGCHC	4 cut(s)	148, 345, 409, 1139
Bsp143I	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
BspACI	CCGC	2 cut(s)	508, 1199
BspANI	GGCC	3 cut(s)	98, 964, 1535
BspCNI	CTCAG	1 cut(s)	86
BspDI	ATCGAT	1 cut(s)	1544
BspHI	TCATGA	1 cut(s)	1315
BspLI	GGNNCC	6 cut(s)	135, 145, 784, 1059, 1236, 1491
BspMAI	CTGCAG	1 cut(s)	1472
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	1229, 1242, 1549
BspT104I	TTCGAA	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	3 cut(s)	517, 744, 1137
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	6 cut(s)	863, 892, 1112, 1246, 1372, 1536
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
BssSI	CACGAG	2 cut(s)	344, 408
Bst2BI	CACGAG	2 cut(s)	344, 408
Bst2UI	CCWGG	2 cut(s)	141, 1374
Bst4CI	ACNGT	1 cut(s)	1398
Bst6I	CTCTTC	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	882, 906
BstDEI	CTNAG	3 cut(s)	73, 281, 1335
BstF5I	GGATG	5 cut(s)	229, 274, 1048, 1450, 1483
BstHHI	GCGC	1 cut(s)	1113
BstKTI	GATC	5 cut(s)	256, 535, 1237, 1544, 1548
BstMAI	GTCTC	1 cut(s)	1126
BstMBI	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstNI	CCWGG	2 cut(s)	141, 1374
BstNSI	RCATGY	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	139, 1372
BstSFI	CTRYAG	2 cut(s)	117, 1468
BstSLI	GKGCMC	2 cut(s)	148, 409
BstV1I	GCAGC	3 cut(s)	508, 1004, 1482
BstX2I	RGATCY	2 cut(s)	253, 1234
BstYI	RGATCY	2 cut(s)	253, 1234
Bsu15I	ATCGAT	1 cut(s)	1544
BsuRI	GGCC	3 cut(s)	98, 964, 1535
BsuTUI	ATCGAT	1 cut(s)	1544
BtsCI	GGATG	5 cut(s)	229, 274, 1048, 1450, 1483
BtsI	GCAGTG	1 cut(s)	1275
BtsIMutI	CAGTG	4 cut(s)	1275, 1365, 1543, 1573
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	2 cut(s)	882, 906
CciI	TCATGA	1 cut(s)	1315
CfoI	GCGC	1 cut(s)	1113
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	6 cut(s)	505, 741, 962, 1088, 1370, 1402
ClaI	ATCGAT	1 cut(s)	1544
CsiI	ACCWGGT	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	178, 921, 942
CviAII	CATG	7 cut(s)	392, 560, 681, 809, 1260, 1316, 1560
CviQI	GTAC	3 cut(s)	178, 921, 942
DdeI	CTNAG	3 cut(s)	73, 281, 1335
DpnI	GATC	5 cut(s)	255, 534, 1236, 1543, 1547
DpnII	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	1533
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Ecl136II	GAGCTC	1 cut(s)	1137
Eco24I	GRGCYC	1 cut(s)	1139
Eco47I	GGWCC	5 cut(s)	505, 741, 1088, 1370, 1402
Eco53kI	GAGCTC	1 cut(s)	1137
Eco57I	CTGAAG	3 cut(s)	35, 158, 824
EcoICRI	GAGCTC	1 cut(s)	1137
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	2 cut(s)	139, 1372
EcoT22I	ATGCAT	1 cut(s)	1565
EcoT38I	GRGCYC	1 cut(s)	1139
FaeI	CATG	7 cut(s)	395, 563, 684, 812, 1263, 1319, 1563
FalI	AAGNNNNNCTT	2 cut(s)	1446, 1478
FaqI	GGGAC	2 cut(s)	1215, 1347
FatI	CATG	7 cut(s)	391, 559, 680, 808, 1259, 1315, 1559
FauI	CCCGC	1 cut(s)	1192
Fnu4HI	GCNGC	3 cut(s)	497, 1018, 1471
FokI	GGATG	5 cut(s)	236, 281, 1055, 1457, 1490
FriOI	GRGCYC	1 cut(s)	1139
Fsp4HI	GCNGC	3 cut(s)	497, 1018, 1471
FspBI	CTAG	4 cut(s)	35, 627, 1406, 1410
GlaI	GCGC	1 cut(s)	1112
GluI	GCNGC	3 cut(s)	497, 1018, 1471
GsuI	CTGGAG	3 cut(s)	600, 738, 745
HaeIII	GGCC	3 cut(s)	98, 964, 1535
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	1113
Hin1II	CATG	7 cut(s)	395, 563, 684, 812, 1263, 1319, 1563
Hin6I	GCGC	1 cut(s)	1111
HinP1I	GCGC	1 cut(s)	1111
HincII	GTYRAC	1 cut(s)	1105
HindII	GTYRAC	1 cut(s)	1105
HindIII	AAGCTT	1 cut(s)	1460
HinfI	GANTC	7 cut(s)	56, 347, 685, 722, 735, 1360, 1424
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	3 cut(s)	4, 941, 1535
Hpy166II	GTNNAC	3 cut(s)	407, 773, 1105
Hpy188I	TCNGA	4 cut(s)	557, 634, 1267, 1355
Hpy188III	TCNNGA	7 cut(s)	53, 536, 579, 717, 739, 762, 1316
Hpy8I	GTNNAC	3 cut(s)	407, 773, 1105
Hpy99I	CGWCG	2 cut(s)	23, 730
HpyAV	CCTTC	3 cut(s)	59, 436, 1013
HpyCH4III	ACNGT	1 cut(s)	1398
HpyCH4IV	ACGT	1 cut(s)	403
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	3 cut(s)	73, 281, 1335
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	7 cut(s)	395, 563, 684, 812, 1263, 1319, 1563
HspAI	GCGC	1 cut(s)	1111
Kzo9I	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
LmnI	GCTCC	6 cut(s)	376, 484, 572, 584, 764, 1290
Lsp1109I	GCAGC	3 cut(s)	508, 1004, 1482
LweI	GCATC	3 cut(s)	202, 716, 1424
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	4 cut(s)	35, 627, 1406, 1410
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	4 cut(s)	44, 637, 844, 1571
MalI	GATC	5 cut(s)	255, 534, 1236, 1543, 1547
MboI	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
MboII	GAAGA	5 cut(s)	239, 319, 551, 575, 692
MfeI	CAATTG	1 cut(s)	1032
MflI	RGATCY	2 cut(s)	253, 1234
MhlI	GDGCHC	4 cut(s)	148, 345, 409, 1139
MlsI	TGGCCA	1 cut(s)	1535
MluNI	TGGCCA	1 cut(s)	1535
MlyI	GAGTC	4 cut(s)	356, 694, 1369, 1418
MmeI	TCCRAC	2 cut(s)	1115, 1262
Mox20I	TGGCCA	1 cut(s)	1535
Mph1103I	ATGCAT	1 cut(s)	1565
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	1535
MseI	TTAA	8 cut(s)	813, 935, 1188, 1218, 1227, 1296, 1322, 1550
MslI	CAYNNNNRTG	1 cut(s)	660
Msp20I	TGGCCA	1 cut(s)	1535
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	141, 1374
MunI	CAATTG	1 cut(s)	1032
Mva1269I	GAATGC	1 cut(s)	1330
MvaI	CCWGG	2 cut(s)	141, 1374
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeII	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
NlaIII	CATG	7 cut(s)	395, 563, 684, 812, 1263, 1319, 1563
NlaIV	GGNNCC	6 cut(s)	135, 145, 784, 1059, 1236, 1491
NmuCI	GTSAC	3 cut(s)	637, 844, 1571
NsiI	ATGCAT	1 cut(s)	1565
NspI	RCATGY	1 cut(s)	812
NspV	TTCGAA	1 cut(s)	450
PagI	TCATGA	1 cut(s)	1315
PctI	GAATGC	1 cut(s)	1330
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	3 cut(s)	56, 722, 735
PflMI	CCANNNNNTGG	1 cut(s)	1399
PkrI	GCNGC	3 cut(s)	498, 1019, 1472
PleI	GAGTC	4 cut(s)	355, 693, 1368, 1418
PpsI	GAGTC	4 cut(s)	355, 693, 1368, 1418
PshBI	ATTAAT	1 cut(s)	935
Psp124BI	GAGCTC	1 cut(s)	1139
Psp6I	CCWGG	2 cut(s)	139, 1372
PspGI	CCWGG	2 cut(s)	139, 1372
PspN4I	GGNNCC	6 cut(s)	135, 145, 784, 1059, 1236, 1491
PspPI	GGNCC	6 cut(s)	505, 741, 962, 1088, 1370, 1402
PstI	CTGCAG	1 cut(s)	1472
PsuI	RGATCY	2 cut(s)	253, 1234
RsaI	GTAC	3 cut(s)	179, 922, 943
RsaNI	GTAC	3 cut(s)	178, 921, 942
RseI	CAYNNNNRTG	1 cut(s)	660
SacI	GAGCTC	1 cut(s)	1139
SaqAI	TTAA	8 cut(s)	813, 935, 1188, 1218, 1227, 1296, 1322, 1550
SatI	GCNGC	3 cut(s)	497, 1018, 1471
Sau3AI	GATC	5 cut(s)	253, 532, 1234, 1541, 1545
Sau96I	GGNCC	6 cut(s)	505, 741, 962, 1088, 1370, 1402
ScaI	AGTACT	2 cut(s)	179, 943
SchI	GAGTC	4 cut(s)	356, 694, 1369, 1418
ScrFI	CCNGG	2 cut(s)	141, 1374
SduI	GDGCHC	4 cut(s)	148, 345, 409, 1139
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	202, 716, 1424
SfcI	CTRYAG	2 cut(s)	117, 1468
SfuI	TTCGAA	1 cut(s)	450
SinI	GGWCC	5 cut(s)	505, 741, 1088, 1370, 1402
SmiMI	CAYNNNNRTG	1 cut(s)	660
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SsiI	CCGC	2 cut(s)	508, 1199
SspMI	CTAG	4 cut(s)	35, 627, 1406, 1410
SstI	GAGCTC	1 cut(s)	1139
StyD4I	CCNGG	2 cut(s)	139, 1372
TaaI	ACNGT	1 cut(s)	1398
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	5 cut(s)	21, 450, 725, 733, 1544
TatI	WGTACW	3 cut(s)	177, 920, 941
TfiI	GAWTC	3 cut(s)	56, 722, 735
Tru1I	TTAA	8 cut(s)	813, 935, 1188, 1218, 1227, 1296, 1322, 1550
Tru9I	TTAA	8 cut(s)	813, 935, 1188, 1218, 1227, 1296, 1322, 1550
TscAI	CASTG	3 cut(s)	1282, 1372, 1543
TseFI	GTSAC	3 cut(s)	637, 844, 1571
TseI	GCWGC	3 cut(s)	496, 1017, 1470
Tsp45I	GTSAC	3 cut(s)	637, 844, 1571
TspDTI	ATGAA	7 cut(s)	240, 576, 843, 1070, 1236, 1248, 1304
TspGWI	ACGGA	2 cut(s)	7, 411
TspRI	CASTG	3 cut(s)	1282, 1372, 1543
Van91I	CCANNNNNTGG	1 cut(s)	1399
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	5 cut(s)	505, 741, 1088, 1370, 1402
VspI	ATTAAT	1 cut(s)	935
XapI	RAATTY	5 cut(s)	28, 127, 310, 912, 1076
XceI	RCATGY	1 cut(s)	812
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	4 cut(s)	35, 627, 1406, 1410
ZrmI	AGTACT	2 cut(s)	179, 943
Zsp2I	ATGCAT	1 cut(s)	1565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.