Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002608

Physical Location & Seq

Genomic Coordinates Reverse (-)

21698102 .. 21699565

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCGGTGGCCTTTAAGGCAATCCCTTTACCCCCTGCGCCTTCATCACAACACCACCAAAACGACGCAAACGACGTCCGCCTAAAAACAAAAATGGCATCGAAGCTACTTGCTTCCGCTATCCGCCGCCAAACCCTAACCACAAAACCCGCCTCCACCGCCTCCGACTTCGTCCGCACCCTCTCCACCGCCGCCGCCGTCGCCGAAACCTACGACGACCCAGATGGAGTTTCAATGAAGGGGGTCAAAATTTCTGGCCGGCCTCTGTACCTGGACATGCAGGCCACGTCGCCGGTGGACCCCAGGGTCGTCGACGCCATGAATGGAGGTGGACAGGAGAGAGGGATTCGGAGCGGAACTGTTCCGACTCCATTGGTGGTAGGGTTTGGTGCGGCCTGCGAAATTGCGAAGAAGGAAATGGAGTATGATGAGAAGAGGGTAAGAGCGTTGCAGGATCGAATGTTAAAGGGAATCAGGAAGAACCTTGATATGGTTGTGGTGAATGGTAGCGAGGAGAGACGTTACCCTGGAAATTTGAATCTTTCGTTTGCTTATGTGGAAGGGGAGAGCTTGTTGATGGGTTTGAAGGAAGTGGCGGTGTCGAGTGGGAGTGCCTGTACCAGTGCGAGTTTGGAGCCCTCATACGTGTTGAGGGCTTTGGGGGTGGATGAGGACATGGCTCATACTTCTATTCGGTTTGGGATTGGGCGGTTCACAACGGAGGAGGAGATTGACCGGGCGGTTCAGCTGACGGTGCAGCAGGTGAAGAAGTTGAGGGAGTTGAGCCCGCTTTATGAGATGGTGAAAGAAGGGATTGATATCAAGAGTATTCAGTGGTCACAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

283

Amino Acids

30.77

Weight (kDa)

7.74

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	114 - 246	8.2e-14	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65720 AT5G65720 AT5G65720
fragaria_vesca	FvH4_1g18610 FvH4_3g39110 FvH4_4g11530
malus_domestica	MD15G1303800.v1.1
prunus_persica	Prupe.6G213300_v2.0.a1
pyrus_communis	pycom02g15750 pycom02g15760 pycom12g09240 pycom14g03250 pycom15g26680
rosa_chinensis	RchiOBHm_Chr2g0109351 RchiOBHm_Chr2g0109391 RchiOBHm_Chr5g0045361
rosa_laevigata	RLG00000017733
rosa_multiflora	Rmu_sc0000332.1_g000011 Rmu_sc0001940.1_g000003 Rmu_sc0012764.1_g000010
rosa_roxburghii	Rroxscaffold_2G00134280
rosa_rugosa	Rorug02G0159500
rosa_samantha	Rh2AG211300 Rh2AG211600 Rh2BG221300 Rh2BG221400 Rh2BG221500 Rh2BG222000 Rh2CG213300 Rh2CG213900 Rh2DG217100 Rh2DG217400 Rh4BG181900 Rh5AG243200 Rh5BG312000 Rh5DG322600 Rh6CG498200 Rh7BG128000
rosa_wichuraiana	Rw5G028200 Rw5G028360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	751
AasI	GACNNNNNNGTC	1 cut(s)	305
AatII	GACGTC	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	751
AccBSI	CCGCTC	1 cut(s)	354
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	249, 532
AcyI	GRCGYC	2 cut(s)	75, 315
AfaI	GTAC	2 cut(s)	269, 619
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	3 cut(s)	234, 538, 586
AjiI	CACGTC	1 cut(s)	288
AjnI	CCWGG	3 cut(s)	270, 302, 526
AluBI	AGCT	3 cut(s)	106, 570, 748
AluI	AGCT	3 cut(s)	106, 570, 748
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	1 cut(s)	462
AoxI	GGCC	5 cut(s)	9, 256, 260, 282, 393
ApeKI	GCWGC	1 cut(s)	757
ApoI	RAATTY	2 cut(s)	249, 532
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	511, 775, 814
AvaII	GGWCC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	639, 788
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	3 cut(s)	218, 571, 793
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	3 cut(s)	272, 304, 528
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	751
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
BlsI	GCNGC	5 cut(s)	128, 193, 196, 394, 759
Bme1390I	CCNGG	4 cut(s)	272, 304, 528, 737
Bme18I	GGWCC	1 cut(s)	298
BmgBI	CACGTC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	300, 636
BmrFI	CCNGG	4 cut(s)	272, 304, 528, 737
BmsI	GCATC	1 cut(s)	107
BpuMI	CCSGG	1 cut(s)	737
BsaAI	YACGTR	1 cut(s)	646
BsaBI	GATNNNNATC	1 cut(s)	818
BsaHI	GRCGYC	2 cut(s)	75, 315
BsaJI	CCNNGG	3 cut(s)	302, 303, 526
BsaXI	ACNNNNNCTCC	4 cut(s)	557, 587, 601, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	2 cut(s)	258, 292
Bse1I	ACTGG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	818
BseBI	CCWGG	3 cut(s)	272, 304, 528
BseDI	CCNNGG	3 cut(s)	302, 303, 526
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	1 cut(s)	818
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	3 cut(s)	527, 737, 740
BseXI	GCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	776
BshFI	GGCC	5 cut(s)	11, 258, 262, 284, 395
BsiSI	CCGG	3 cut(s)	259, 293, 736
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	511
BsmBI	CGTCTC	1 cut(s)	511
BsnI	GGCC	5 cut(s)	11, 258, 262, 284, 395
Bsp1286I	GDGCHC	2 cut(s)	639, 788
Bsp143I	GATC	1 cut(s)	454
BspANI	GGCC	5 cut(s)	11, 258, 262, 284, 395
BspLI	GGNNCC	2 cut(s)	300, 636
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	1 cut(s)	462
BsrBI	CCGCTC	1 cut(s)	354
BsrFI	RCCGGY	2 cut(s)	258, 292
BsrI	ACTGG	1 cut(s)	621
BssAI	RCCGGY	2 cut(s)	258, 292
BssECI	CCNNGG	3 cut(s)	302, 303, 526
BssMI	GATC	1 cut(s)	454
BssNI	GRCGYC	2 cut(s)	75, 315
Bst2UI	CCWGG	3 cut(s)	272, 304, 528
Bst4CI	ACNGT	2 cut(s)	361, 754
Bst6I	CTCTTC	1 cut(s)	428
BstACI	GRCGYC	2 cut(s)	75, 315
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	260, 282, 397, 788
BstF5I	GGATG	1 cut(s)	673
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	1 cut(s)	454
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 158, 200, 754
BstNI	CCWGG	3 cut(s)	272, 304, 528
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	4 cut(s)	270, 302, 526, 735
BstV1I	GCAGC	1 cut(s)	769
BsuRI	GGCC	5 cut(s)	11, 258, 262, 284, 395
BtrI	CACGTC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	628, 839
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	4 cut(s)	260, 282, 397, 788
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	2 cut(s)	258, 292
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	2 cut(s)	74, 323
Csp6I	GTAC	2 cut(s)	268, 618
CviAII	CATG	3 cut(s)	277, 319, 676
CviQI	GTAC	2 cut(s)	268, 618
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EciI	GGCGGA	2 cut(s)	68, 113
Eco24I	GRGCYC	2 cut(s)	639, 788
Eco32I	GATATC	1 cut(s)	820
Eco47I	GGWCC	1 cut(s)	298
EcoRII	CCWGG	3 cut(s)	270, 302, 526
EcoRV	GATATC	1 cut(s)	820
EcoT38I	GRGCYC	2 cut(s)	639, 788
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	3 cut(s)	280, 322, 679
FaiI	YATR	9 cut(s)	278, 320, 426, 491, 555, 643, 677, 684, 795
FatI	CATG	3 cut(s)	276, 318, 675
FauI	CCCGC	2 cut(s)	157, 795
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
FokI	GGATG	1 cut(s)	680
FriOI	GRGCYC	2 cut(s)	639, 788
FseI	GGCCGGCC	1 cut(s)	262
Fsp4HI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
HaeIII	GGCC	5 cut(s)	11, 258, 262, 284, 395
HapII	CCGG	3 cut(s)	259, 293, 736
HgaI	GACGC	2 cut(s)	74, 323
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	2 cut(s)	75, 315
Hin1II	CATG	3 cut(s)	280, 322, 679
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	4 cut(s)	346, 367, 471, 538
HpaII	CCGG	3 cut(s)	259, 293, 736
HphI	GGTGA	3 cut(s)	511, 775, 814
Hpy166II	GTNNAC	4 cut(s)	298, 313, 332, 714
Hpy188I	TCNGA	3 cut(s)	166, 351, 366
Hpy188III	TCNNGA	2 cut(s)	475, 823
Hpy8I	GTNNAC	4 cut(s)	298, 313, 332, 714
Hpy99I	CGWCG	7 cut(s)	68, 77, 203, 218, 292, 314, 317
HpyAV	CCTTC	6 cut(s)	51, 232, 406, 554, 580, 803
HpyCH4III	ACNGT	2 cut(s)	361, 754
HpyCH4IV	ACGT	4 cut(s)	75, 287, 520, 645
HpyCH4V	TGCA	3 cut(s)	280, 451, 757
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 158, 200, 754
HpySE526I	ACGT	4 cut(s)	75, 287, 520, 645
Hsp92I	GRCGYC	2 cut(s)	75, 315
Hsp92II	CATG	3 cut(s)	280, 322, 679
HspAI	GCGC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	2 cut(s)	351, 634
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	1 cut(s)	107
MaeII	ACGT	4 cut(s)	75, 287, 520, 645
MaeIII	GTNAC	2 cut(s)	521, 837
MalI	GATC	1 cut(s)	456
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	1 cut(s)	454
MboII	GAAGA	4 cut(s)	421, 445, 490, 778
MhlI	GDGCHC	2 cut(s)	639, 788
MluCI	AATT	3 cut(s)	249, 402, 532
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	2 cut(s)	189, 389
MroNI	GCCGGC	1 cut(s)	258
MseI	TTAA	3 cut(s)	15, 464, 847
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	3 cut(s)	259, 293, 736
MspR9I	CCNGG	4 cut(s)	272, 304, 528, 737
MvaI	CCWGG	3 cut(s)	272, 304, 528
MwoI	GCNNNNNNNGC	4 cut(s)	17, 158, 200, 754
NaeI	GCCGGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	1 cut(s)	454
NgoMIV	GCCGGC	1 cut(s)	258
NlaIII	CATG	3 cut(s)	280, 322, 679
NlaIV	GGNNCC	2 cut(s)	300, 636
NmuCI	GTSAC	1 cut(s)	837
NspI	RCATGY	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	751
PasI	CCCWGGG	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 72
PdiI	GCCGGC	1 cut(s)	260
PfeI	GAWTC	3 cut(s)	346, 471, 538
PflFI	GACNNNGTC	1 cut(s)	170
PkrI	GCNGC	5 cut(s)	128, 193, 196, 394, 759
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	270, 302, 526
PspGI	CCWGG	3 cut(s)	270, 302, 526
PspN4I	GGNNCC	2 cut(s)	300, 636
PspPI	GGNCC	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	748
RigI	GGCCGGCC	1 cut(s)	262
RsaI	GTAC	2 cut(s)	269, 619
RsaNI	GTAC	2 cut(s)	268, 618
SalI	GTCGAC	1 cut(s)	311
SaqAI	TTAA	3 cut(s)	15, 464, 847
SatI	GCNGC	5 cut(s)	127, 192, 195, 393, 758
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	4 cut(s)	272, 304, 528, 737
SduI	GDGCHC	2 cut(s)	639, 788
SfaNI	GCATC	1 cut(s)	107
SgrAI	CRCCGGYG	1 cut(s)	292
SgrDI	CGTCGACG	1 cut(s)	311
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	3 cut(s)	249, 402, 532
StyD4I	CCNGG	4 cut(s)	270, 302, 526, 735
TaaI	ACNGT	2 cut(s)	361, 754
TaiI	ACGT	4 cut(s)	78, 290, 523, 648
TaqI	TCGA	4 cut(s)	101, 312, 457, 602
TasI	AATT	3 cut(s)	249, 402, 532
TauI	GCSGC	4 cut(s)	129, 194, 197, 395
TfiI	GAWTC	3 cut(s)	346, 471, 538
Tru1I	TTAA	3 cut(s)	15, 464, 847
Tru9I	TTAA	3 cut(s)	15, 464, 847
TscAI	CASTG	2 cut(s)	628, 839
TseFI	GTSAC	1 cut(s)	837
TseI	GCWGC	1 cut(s)	757
Tsp45I	GTSAC	1 cut(s)	837
TspDTI	ATGAA	3 cut(s)	33, 251, 335
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	2 cut(s)	628, 839
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	2 cut(s)	249, 532
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	2 cut(s)	292, 628
XmiI	GTMKAC	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.