pycom15g32710

Phosphoglycerate mutase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001245
Physical Location & Seq
Forward (+)
31915983 .. 31917688
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
ATGACTGCCATGCGTGCCATGACACAGCACCGTCGTAAGAAGGTCCCAGTTATAATGCATAATGAGAGTGAACGGGCTAGGGCATGGAGTCAGATTTTCAGTGAAGACACAATAAAGCAAACCATTCCTGTCGTAGCAGATTGGCGATTGAATGAAAGAATGTATGGGGAATTACAGGGTCTTAATAAGCAGGAAACAGCAGACAGATATGGGAAGGAACAAGTTCACGAGTGGCGTCGGAGTTATGACATTCCCCCTCCCAATGGCGAGAGTTTGGAAATGTGCGCTCAAAGAGCTGTTGCTTATTTCAAAGATCAAATTGAACCCCAACTGTTGGCTGGGAAGAATGTTATGATTGCTGCGCACGGGAATTCGCTGAGATCCATAATCATGTATCTTGACAAACTGACTTCTCAAGAGGTTATTAGTTTGGAACTATCAACTGGAATTCCTATGCTTTACATTTCCAAAGAGGGAAAATTCATCCGGAGGGGAAGTCCTGCGGGACCTGCTGAGGCTGGGGTTTATGCCTACACTAAGAATTTGGCTCTTTACAGGCAGAAGTTAGATGAGATGGTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00260 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko05230 map00010 map00260 map00680 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map05230
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

195

Amino Acids

22.27

Weight (kDa)

9.12

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 5 - 147 4.3e-17 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 53
Acc16I TGCGCA 1 cut(s) 363
Acc36I ACCTGC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 486
AciI CCGC 1 cut(s) 503
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 4 cut(s) 370, 447, 479, 541
AcyI GRCGYC 1 cut(s) 235
AfiI CCNNNNNNNGG 2 cut(s) 263, 334
AgsI TTSAA 3 cut(s) 151, 310, 323
AluBI AGCT 1 cut(s) 296
AluI AGCT 1 cut(s) 296
AlwI GGATC 1 cut(s) 375
Aor13HI TCCGGA 1 cut(s) 486
ApeKI GCWGC 1 cut(s) 359
ApoI RAATTY 4 cut(s) 370, 447, 479, 541
Asp700I GAANNNNTTC 1 cut(s) 222
AspLEI GCGC 2 cut(s) 287, 364
AspS9I GGNCC 2 cut(s) 43, 506
AvaII GGWCC 2 cut(s) 43, 506
BauI CACGAG 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 1 cut(s) 346
BccI CCATC 1 cut(s) 568
BfaI CTAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme18I GGWCC 2 cut(s) 43, 506
BmgT120I GGNCC 2 cut(s) 43, 506
BmiI GGNNCC 2 cut(s) 45, 507
BmrI ACTGGG 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 399
BsaHI GRCGYC 1 cut(s) 235
BsaWI WCCGGW 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 481, 511
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 334
Bse1I ACTGG 2 cut(s) 47, 448
BseAI TCCGGA 1 cut(s) 486
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 263, 334
BseMII CTCAG 2 cut(s) 368, 504
BseNI ACTGG 2 cut(s) 47, 448
BseXI GCAGC 1 cut(s) 346
BseYI CCCAGC 2 cut(s) 338, 518
BsiSI CCGG 1 cut(s) 487
BslFI GGGAC 2 cut(s) 29, 519
BslI CCNNNNNNNGG 2 cut(s) 263, 334
BsmFI GGGAC 2 cut(s) 29, 519
Bsp13I TCCGGA 1 cut(s) 486
Bsp143I GATC 2 cut(s) 313, 380
BspACI CCGC 1 cut(s) 503
BspCNI CTCAG 2 cut(s) 369, 505
BspEI TCCGGA 1 cut(s) 486
BspLI GGNNCC 2 cut(s) 45, 507
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 1 cut(s) 375
BsrI ACTGG 2 cut(s) 47, 448
BssMI GATC 2 cut(s) 313, 380
BssNI GRCGYC 1 cut(s) 235
BssSI CACGAG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 32, 333
BstACI GRCGYC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 377, 513, 537
BstF5I GGATG 1 cut(s) 483
BstHHI GCGC 2 cut(s) 287, 364
BstKTI GATC 2 cut(s) 316, 383
BstMBI GATC 2 cut(s) 313, 380
BstMWI GCNNNNNNNGC 3 cut(s) 14, 293, 509
BstV1I GCAGC 1 cut(s) 346
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 380
BstYI RGATCY 1 cut(s) 380
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 106
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 2 cut(s) 287, 364
Cfr13I GGNCC 2 cut(s) 43, 506
CseI GACGC 1 cut(s) 224
CviAII CATG 4 cut(s) 10, 19, 84, 391
CviJI RGCY 5 cut(s) 77, 296, 338, 518, 548
CviKI_1 RGCY 5 cut(s) 77, 296, 338, 518, 548
DdeI CTNAG 3 cut(s) 377, 513, 537
DpnI GATC 2 cut(s) 315, 382
DpnII GATC 2 cut(s) 313, 380
Eco47I GGWCC 2 cut(s) 43, 506
EcoO109I RGGNCCY 2 cut(s) 43, 506
EcoRI GAATTC 2 cut(s) 370, 447
EcoT22I ATGCAT 1 cut(s) 60
FaeI CATG 4 cut(s) 13, 22, 87, 394
FaqI GGGAC 2 cut(s) 29, 519
FatI CATG 4 cut(s) 9, 18, 83, 390
FauI CCCGC 1 cut(s) 496
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 1 cut(s) 78
FspI TGCGCA 1 cut(s) 363
GlaI GCGC 2 cut(s) 286, 363
GluI GCNGC 1 cut(s) 360
GsaI CCCAGC 2 cut(s) 342, 522
HapII CCGG 1 cut(s) 487
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 287, 364
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 4 cut(s) 13, 22, 87, 394
Hin6I GCGC 2 cut(s) 285, 362
HinP1I GCGC 2 cut(s) 285, 362
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 487
Hpy166II GTNNAC 2 cut(s) 71, 226
Hpy188I TCNGA 2 cut(s) 93, 240
Hpy188III TCNNGA 4 cut(s) 227, 398, 416, 487
Hpy8I GTNNAC 2 cut(s) 71, 226
Hpy99I CGWCG 2 cut(s) 36, 240
HpyAV CCTTC 2 cut(s) 34, 208
HpyCH4III ACNGT 2 cut(s) 32, 333
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 293, 509
HpyF3I CTNAG 3 cut(s) 377, 513, 537
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 4 cut(s) 13, 22, 87, 394
HspAI GCGC 2 cut(s) 285, 362
Kpn2I TCCGGA 1 cut(s) 486
Kzo9I GATC 2 cut(s) 313, 380
Lsp1109I GCAGC 1 cut(s) 346
MaeI CTAG 1 cut(s) 78
MalI GATC 2 cut(s) 315, 382
MboI GATC 2 cut(s) 313, 380
MboII GAAGA 2 cut(s) 116, 355
MflI RGATCY 1 cut(s) 380
MluCI AATT 6 cut(s) 170, 318, 370, 447, 479, 541
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 5 cut(s) 267, 412, 466, 483, 508
Mph1103I ATGCAT 1 cut(s) 60
MroI TCCGGA 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 222
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 1 cut(s) 487
MwoI GCNNNNNNNGC 3 cut(s) 14, 293, 509
NdeII GATC 2 cut(s) 313, 380
NlaIII CATG 4 cut(s) 13, 22, 87, 394
NlaIV GGNNCC 2 cut(s) 45, 507
NsbI TGCGCA 1 cut(s) 363
NsiI ATGCAT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PpuMI RGGWCCY 2 cut(s) 43, 506
PsiI TTATAA 1 cut(s) 53
Psp5II RGGWCCY 2 cut(s) 43, 506
PspFI CCCAGC 2 cut(s) 338, 518
PspN4I GGNNCC 2 cut(s) 45, 507
PspPI GGNCC 2 cut(s) 43, 506
PspPPI RGGWCCY 2 cut(s) 43, 506
PsuI RGATCY 1 cut(s) 380
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 2 cut(s) 313, 380
Sau96I GGNCC 2 cut(s) 43, 506
SchI GAGTC 1 cut(s) 97
SetI ASST 4 cut(s) 45, 298, 423, 511
SinI GGWCC 2 cut(s) 43, 506
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 6 cut(s) 170, 318, 370, 447, 479, 541
SsiI CCGC 1 cut(s) 503
SspMI CTAG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 32, 333
TasI AATT 6 cut(s) 170, 318, 370, 447, 479, 541
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 3 cut(s) 168, 472, 569
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 43, 506
XapI RAATTY 4 cut(s) 370, 447, 479, 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.