pycom16g03450
ERF Family

Metallo-beta-lactamase superfamily

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
2122394 .. 2125189
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1065 bp
ATGGCAGCGCACCGGAAGCTCGCTGTGATTCTCGAGAATCCTCAAAACGACGCCGAATTCCTCCTCGTGAAACAGACGCGACCGCCGAAGTTCGACGACGAAGAGTACGACTCGTACGTCGATTCCGATCTCTGGGACTTGCCCTCCTCCCAATTGAACCTTCTAGAAGGACAATCGAAGCCCTCGATTGCAGTGGCAGGCGCAGAATCGTTGTCGGGGAAGATCGATTTGGAAAAATTCGATTTCGATTCTGCTCTCAACCAGGTTCTGGAACAAGTAGGGTTTAAGGCAGCTGACGGTGGAGATTGGAGGTTGTTCAAGTACGTGGAGGAAGGTCAGTTTGGACCCGGTCCGCCCATTAACTCGGTGTTCATTAGGGGAAAATTGGTAGCACCGGAGCAAAATTTACAAGAATCGTGTAAATGGATGTCTGTCCCGAGTTGTCTAAGCTGGCTTGTTGAAGTGAAACCAAGCAGTGTTCGTGTGGGGCCATTGATAGTTGCAGGTCTTCTAAATGAATCTGAGCAATCACGAAGGATGAACATTCCATCCACCTTACCTTACCAGGAGTACCCTCCTGGTGTTGTGCTTGTACCTATGGGAAGCAGGACAGCAAAACCTTTTTATACAACAAACCTGGTTGTTTTTGCACCCAAAAATGCTTCAAATGAATCTGGGAAGAATGATTTTATTGCTTGTGGAGATGCATTGATAGTGGATCCTGGGTGCCGGTCTGAATTCCATGAAGAGCTTGCACAAATTGTAACTTCATTGCCAAGAAAGTTAGTTGTCTTTGTTACGCATCACCATCAGGATCATGTGGATGTTATTCAGCATTGCAATCCTGATGCTACTTTATTAGCACATGAAAATACCATGCGACGCATTGGAAAAGATGACTGGTCTCTTGGGTTCACTGCAATTTCTGGAACTGAAGAGATTTGCATTGGTGGTCAGCGATTGATTGCCCTTTTTTCTCCGGGGCATACAGATGGGCATATGGCACTGCTTCATGCCAGTACCCACACATTGATTGTGGGTGATCGATTGCGTGGGTCAAGGTAG

Protein Analysis

355

Amino Acids

39.01

Weight (kDa)

5.38

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 494
AccB1I GGYRCC 1 cut(s) 726
AccB7I CCANNNNNTGG 1 cut(s) 268
AccII CGCG 1 cut(s) 79
AciI CCGC 2 cut(s) 83, 353
AclWI GGATC 3 cut(s) 713, 726, 822
AcsI RAATTY 4 cut(s) 56, 236, 403, 737
AcuI CTGAAG 1 cut(s) 954
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 6 cut(s) 107, 116, 323, 572, 594, 1021
AfiI CCNNNNNNNGG 2 cut(s) 132, 268
AgsI TTSAA 4 cut(s) 157, 319, 461, 666
AjnI CCWGG 5 cut(s) 261, 564, 577, 636, 721
AjuI GAANNNNNNNTTGG 6 cut(s) 144, 176, 212, 244, 324, 356
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 4 cut(s) 19, 293, 450, 751
AluI AGCT 4 cut(s) 19, 293, 450, 751
Alw26I GTCTC 1 cut(s) 909
AlwI GGATC 3 cut(s) 713, 726, 822
AlwNI CAGNNNCTG 1 cut(s) 268
Ama87I CYCGRG 2 cut(s) 32, 436
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 5, 290
ApoI RAATTY 4 cut(s) 56, 236, 403, 737
AspLEI GCGC 2 cut(s) 10, 203
AspS9I GGNCC 3 cut(s) 344, 350, 488
AsuC2I CCSGG 2 cut(s) 348, 981
AsuHPI GGTGA 2 cut(s) 797, 1052
AvaI CYCGRG 2 cut(s) 32, 436
AvaII GGWCC 2 cut(s) 344, 350
BamHI GGATCC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 726
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 2 cut(s) 17, 302
BccI CCATC 3 cut(s) 556, 816, 986
BciT130I CCWGG 5 cut(s) 263, 566, 579, 638, 723
BcnI CCSGG 2 cut(s) 348, 981
BcoDI GTCTC 1 cut(s) 909
BfaI CTAG 1 cut(s) 164
BfuAI ACCTGC 1 cut(s) 494
BisI GCNGC 2 cut(s) 6, 291
BlsI GCNGC 2 cut(s) 7, 292
Bme1390I CCNGG 7 cut(s) 263, 348, 566, 579, 638, 723, 981
Bme18I GGWCC 2 cut(s) 344, 350
BmeT110I CYCGRG 2 cut(s) 32, 436
BmgT120I GGNCC 3 cut(s) 344, 350, 488
BmiI GGNNCC 4 cut(s) 346, 489, 720, 728
BmrFI CCNGG 7 cut(s) 263, 348, 566, 579, 638, 723, 981
BmsI GCATC 3 cut(s) 694, 811, 838
BpiI GAAGAC 1 cut(s) 500
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpuMI CCSGG 2 cut(s) 348, 981
Bsa29I ATCGAT 2 cut(s) 225, 1045
BsaAI YACGTR 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 909
BsaJI CCNNGG 2 cut(s) 722, 980
BsaWI WCCGGW 2 cut(s) 12, 394
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 268
Bse118I RCCGGY 1 cut(s) 729
Bse1I ACTGG 2 cut(s) 905, 1017
Bse3DI GCAATG 2 cut(s) 770, 835
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 5 cut(s) 263, 566, 579, 638, 723
BseCI ATCGAT 2 cut(s) 225, 1045
BseDI CCNNGG 2 cut(s) 722, 980
BseGI GGATG 4 cut(s) 432, 543, 548, 829
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 132, 268
BseMI GCAATG 2 cut(s) 770, 835
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 905, 1017
BseRI GAGGAG 2 cut(s) 53, 136
BseXI GCAGC 2 cut(s) 17, 302
Bsh1236I CGCG 1 cut(s) 79
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 490
BshNI GGYRCC 1 cut(s) 726
BshVI ATCGAT 2 cut(s) 225, 1045
BsiEI CGRYCG 1 cut(s) 83
BsiHKCI CYCGRG 2 cut(s) 32, 436
BsiSI CCGG 5 cut(s) 13, 348, 395, 730, 980
BsiWI CGTACG 1 cut(s) 114
BslFI GGGAC 2 cut(s) 149, 419
BslI CCNNNNNNNGG 2 cut(s) 132, 268
BsmAI GTCTC 1 cut(s) 909
BsmFI GGGAC 2 cut(s) 149, 419
BsnI GGCC 1 cut(s) 490
Bso31I GGTCTC 1 cut(s) 909
BsoBI CYCGRG 2 cut(s) 32, 436
Bsp143I GATC 5 cut(s) 127, 222, 718, 814, 1042
BspACI CCGC 2 cut(s) 83, 353
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 1 cut(s) 514
BspDI ATCGAT 2 cut(s) 225, 1045
BspFNI CGCG 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 346, 489, 720, 728
BspMI ACCTGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 713, 726, 822
BspQI GCTCTTC 1 cut(s) 741
BspT107I GGYRCC 1 cut(s) 726
BspTNI GGTCTC 1 cut(s) 909
BsrDI GCAATG 2 cut(s) 770, 835
BsrFI RCCGGY 1 cut(s) 729
BsrI ACTGG 2 cut(s) 905, 1017
BssAI RCCGGY 1 cut(s) 729
BssECI CCNNGG 2 cut(s) 722, 980
BssMI GATC 5 cut(s) 127, 222, 718, 814, 1042
BssNI GRCGYC 1 cut(s) 51
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 5 cut(s) 263, 566, 579, 638, 723
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 3 cut(s) 96, 741, 930
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 325
BstC8I GCNNGC 4 cut(s) 21, 199, 452, 753
BstDEI CTNAG 2 cut(s) 446, 522
BstF5I GGATG 4 cut(s) 432, 543, 548, 829
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 2 cut(s) 10, 203
BstKTI GATC 5 cut(s) 130, 225, 721, 817, 1045
BstMAI GTCTC 1 cut(s) 909
BstMBI GATC 5 cut(s) 127, 222, 718, 814, 1042
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 5 cut(s) 263, 566, 579, 638, 723
BstSCI CCNGG 7 cut(s) 261, 346, 564, 577, 636, 721, 979
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 17, 302
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 718
BstYI RGATCY 1 cut(s) 718
Bsu15I ATCGAT 2 cut(s) 225, 1045
BsuRI GGCC 1 cut(s) 490
BsuTUI ATCGAT 2 cut(s) 225, 1045
BtsCI GGATG 4 cut(s) 432, 543, 548, 829
BtsI GCAGTG 4 cut(s) 198, 481, 915, 1004
BtsIMutI CAGTG 4 cut(s) 198, 481, 915, 1004
BveI ACCTGC 1 cut(s) 494
Cac8I GCNNGC 4 cut(s) 21, 199, 452, 753
CaiI CAGNNNCTG 1 cut(s) 268
CfoI GCGC 2 cut(s) 10, 203
Cfr10I RCCGGY 1 cut(s) 729
Cfr13I GGNCC 3 cut(s) 344, 350, 488
ClaI ATCGAT 2 cut(s) 225, 1045
CpoI CGGWCCG 1 cut(s) 350
CseI GACGC 3 cut(s) 59, 85, 891
CsiI ACCWGGT 2 cut(s) 261, 636
Csp6I GTAC 6 cut(s) 106, 115, 322, 571, 593, 1020
CspI CGGWCCG 1 cut(s) 350
CviAII CATG 5 cut(s) 743, 818, 866, 877, 1013
CviJI RGCY 7 cut(s) 19, 181, 293, 450, 454, 490, 751
CviKI_1 RGCY 7 cut(s) 19, 181, 293, 450, 454, 490, 751
CviQI GTAC 6 cut(s) 106, 115, 322, 571, 593, 1020
DdeI CTNAG 2 cut(s) 446, 522
DpnI GATC 5 cut(s) 129, 224, 720, 816, 1044
DpnII GATC 5 cut(s) 127, 222, 718, 814, 1042
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 3 cut(s) 96, 741, 930
EarI CTCTTC 3 cut(s) 96, 741, 930
EciI GGCGGA 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 909
Eco47I GGWCC 2 cut(s) 344, 350
Eco57I CTGAAG 1 cut(s) 954
Eco88I CYCGRG 2 cut(s) 32, 436
EcoRI GAATTC 2 cut(s) 56, 737
EcoRII CCWGG 5 cut(s) 261, 564, 577, 636, 721
EcoT22I ATGCAT 1 cut(s) 709
FaeI CATG 5 cut(s) 746, 821, 869, 880, 1016
FaqI GGGAC 2 cut(s) 149, 419
FatI CATG 5 cut(s) 742, 817, 865, 876, 1012
FauNDI CATATG 1 cut(s) 999
Fnu4HI GCNGC 2 cut(s) 6, 291
FokI GGATG 4 cut(s) 439, 535, 550, 836
Fsp4HI GCNGC 2 cut(s) 6, 291
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 9, 202
GluI GCNGC 2 cut(s) 6, 291
HaeIII GGCC 1 cut(s) 490
HapII CCGG 5 cut(s) 13, 348, 395, 730, 980
HgaI GACGC 3 cut(s) 59, 85, 891
HhaI GCGC 2 cut(s) 10, 203
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 746, 821, 869, 880, 1016
Hin6I GCGC 2 cut(s) 8, 201
HinP1I GCGC 2 cut(s) 8, 201
HinfI GANTC 9 cut(s) 28, 37, 110, 122, 206, 248, 413, 518, 671
HpaII CCGG 5 cut(s) 13, 348, 395, 730, 980
HphI GGTGA 2 cut(s) 797, 1052
Hpy166II GTNNAC 1 cut(s) 915
Hpy188I TCNGA 3 cut(s) 127, 523, 736
Hpy8I GTNNAC 1 cut(s) 915
Hpy99I CGWCG 5 cut(s) 53, 98, 101, 122, 885
HpyAV CCTTC 4 cut(s) 161, 170, 326, 528
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 2 cut(s) 117, 324
HpyCH4V TGCA 8 cut(s) 191, 503, 650, 707, 755, 840, 920, 945
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
HpyF3I CTNAG 2 cut(s) 446, 522
HpySE526I ACGT 2 cut(s) 117, 324
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 746, 821, 869, 880, 1016
HspAI GCGC 2 cut(s) 8, 201
Kzo9I GATC 5 cut(s) 127, 222, 718, 814, 1042
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 2 cut(s) 17, 302
LweI GCATC 3 cut(s) 694, 811, 838
MabI ACCWGGT 2 cut(s) 261, 636
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 117, 324
MaeIII GTNAC 2 cut(s) 763, 796
MalI GATC 5 cut(s) 129, 224, 720, 816, 1044
MboI GATC 5 cut(s) 127, 222, 718, 814, 1042
MboII GAAGA 6 cut(s) 113, 232, 500, 691, 758, 947
MfeI CAATTG 1 cut(s) 152
MflI RGATCY 1 cut(s) 718
MluCI AATT 8 cut(s) 56, 152, 236, 383, 403, 737, 759, 921
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 9 cut(s) 51, 71, 74, 154, 157, 193, 303, 322, 585
Mph1103I ATGCAT 1 cut(s) 709
MseI TTAA 2 cut(s) 285, 360
MslI CAYNNNNRTG 2 cut(s) 822, 990
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 5 cut(s) 13, 348, 395, 730, 980
MspR9I CCNGG 7 cut(s) 263, 348, 566, 579, 638, 723, 981
MunI CAATTG 1 cut(s) 152
MvaI CCWGG 5 cut(s) 263, 566, 579, 638, 723
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 16
NciI CCSGG 2 cut(s) 348, 981
NdeI CATATG 1 cut(s) 999
NdeII GATC 5 cut(s) 127, 222, 718, 814, 1042
NlaIII CATG 5 cut(s) 746, 821, 869, 880, 1016
NlaIV GGNNCC 4 cut(s) 346, 489, 720, 728
NsiI ATGCAT 1 cut(s) 709
PaeR7I CTCGAG 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 741
PcsI WCGNNNNNNNCGW 5 cut(s) 83, 105, 114, 123, 182
PfeI GAWTC 8 cut(s) 28, 37, 122, 206, 248, 413, 518, 671
Pfl23II CGTACG 1 cut(s) 114
PflFI GACNNNGTC 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 7, 292
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 325
Psp6I CCWGG 5 cut(s) 261, 564, 577, 636, 721
PspGI CCWGG 5 cut(s) 261, 564, 577, 636, 721
PspLI CGTACG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 346, 489, 720, 728
PspPI GGNCC 3 cut(s) 344, 350, 488
PstNI CAGNNNCTG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 718
PsyI GACNNNGTC 1 cut(s) 348
PvuII CAGCTG 1 cut(s) 293
RsaI GTAC 6 cut(s) 107, 116, 323, 572, 594, 1021
RsaNI GTAC 6 cut(s) 106, 115, 322, 571, 593, 1020
RseI CAYNNNNRTG 2 cut(s) 822, 990
Rsr2I CGGWCCG 1 cut(s) 350
RsrII CGGWCCG 1 cut(s) 350
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 2 cut(s) 285, 360
SatI GCNGC 2 cut(s) 6, 291
Sau3AI GATC 5 cut(s) 127, 222, 718, 814, 1042
Sau96I GGNCC 3 cut(s) 344, 350, 488
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 7 cut(s) 263, 348, 566, 579, 638, 723, 981
SexAI ACCWGGT 2 cut(s) 261, 636
SfaNI GCATC 3 cut(s) 694, 811, 838
Sfr274I CTCGAG 1 cut(s) 32
SinI GGWCC 2 cut(s) 344, 350
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 2 cut(s) 822, 990
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 8 cut(s) 56, 152, 236, 383, 403, 737, 759, 921
SsiI CCGC 2 cut(s) 83, 353
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 7 cut(s) 261, 346, 564, 577, 636, 721, 979
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 2 cut(s) 120, 327
TaqI TCGA 9 cut(s) 33, 93, 120, 176, 185, 225, 240, 246, 1045
TasI AATT 8 cut(s) 56, 152, 236, 383, 403, 737, 759, 921
TfiI GAWTC 8 cut(s) 28, 37, 122, 206, 248, 413, 518, 671
Tru1I TTAA 2 cut(s) 285, 360
Tru9I TTAA 2 cut(s) 285, 360
TscAI CASTG 4 cut(s) 198, 481, 922, 1011
TseI GCWGC 2 cut(s) 5, 290
TspDTI ATGAA 8 cut(s) 361, 531, 554, 684, 759, 759, 882, 1001
TspRI CASTG 4 cut(s) 198, 481, 922, 1011
Tth111I GACNNNGTC 1 cut(s) 348
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 2 cut(s) 344, 350
XapI RAATTY 4 cut(s) 56, 236, 403, 737
XbaI TCTAGA 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.