pycom16g12760

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003995
Physical Location & Seq
Forward (+)
9030636 .. 9032016
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 939 bp
ATGGCCACATTTGCTTATGCCACCACCACCGCCATTGTCTTCCTCATCCTCCTCCCGCTGTCCTGCTCTTCCGAATCGATTTTGCACAACCATCACCACGGCGCCTCCTCGTCCGTCCAGAAATCGGACGTCGATCTTTTGGAGTTTCCTTTGAATTTAGAGTATTTGGAAGCTGAGTTCTTTTTGTATGGATCTTTGGGGTATGGCTTGGATAAAGTTTATCCGAGCTTAGCCCAAGGAGGTCCGTCTCCCATTGGTGCCAAAAAGGCACATTTGGACGACTTCACTAGAGATGTCATCGAGCAATTTGGATGGCAAGAAGTTGGACACTTGAGAGCTATTAAGAAAACTGTGAAGGGTTTCCCAAGGCCATTGTTGAATATAAGTGCAGCATCATTTGCTCATGTGTTTGATTCTGCATTTGGGAGTCCCTTAAATCCACCATTTGACCCTTATGCCAATTCAATCAACTATCTCCTTGCATCCTATCTCATTCCTTATGTTGGTCTCACTGGCTATGTTGGTGCAAGCCCTAAGCTCCAAGGTGCTACTTCCAAAAGGCTAGTTGCAGGTCTTTTGGGTGCTGAAGCAGGCCAAAATGCAGTGATTCGAGCATTGCTATACGAGCGTGCAAAGTTGAAAGTAGAACCATATGGCATTACAGTGGCTGAGTTCACAACTCTCATTTCGGAACTAAGGAATAATCTAGGACACGAAGGTTTGAAAGATGAAGGCCTTGTGGTTCCCCAAGACTTGGGTGCTGAGGGAAAAGTAAGCGGCAATATTCTTGCCGCAGACGAGTACTCAGTTGCATATGATAGGACTCCGGAGGAGATACTAAGGATCGTATACGGTAGCGGTAATGAACGTGTACCTGGCGGTATCTACCCTAAAGGAGCTGACGGCCGGATTGCTAAATCTTATTTGAAAAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

313

Amino Acids

33.69

Weight (kDa)

5.93

Isoelectric Point (pI)

35.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 42 - 209 1.5e-35 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 560
AccB1I GGYRCC 2 cut(s) 101, 257
AccB7I CCANNNNNTGG 1 cut(s) 754
AccI GTMKAC 1 cut(s) 849
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 6 cut(s) 30, 56, 777, 792, 858, 879
AclWI GGATC 2 cut(s) 199, 851
AcoI YGGCCR 2 cut(s) 3, 904
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 2 cut(s) 102, 129
AfaI GTAC 2 cut(s) 803, 873
AfiI CCNNNNNNNGG 3 cut(s) 124, 503, 754
AflIII ACRYGT 1 cut(s) 868
AgsI TTSAA 6 cut(s) 154, 379, 465, 640, 724, 928
AjnI CCWGG 1 cut(s) 874
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 5 cut(s) 173, 228, 338, 538, 899
AluI AGCT 5 cut(s) 173, 228, 338, 538, 899
Alw26I GTCTC 2 cut(s) 252, 512
AlwI GGATC 2 cut(s) 199, 851
AlwNI CAGNNNCTG 1 cut(s) 668
Aor13HI TCCGGA 1 cut(s) 826
AoxI GGCC 5 cut(s) 3, 368, 592, 733, 904
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 154
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 101, 257
BbsI GAAGAC 1 cut(s) 31
BbvCI CCTCAGC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 401
BccI CCATC 2 cut(s) 99, 306
BceAI ACGGC 2 cut(s) 115, 919
BciT130I CCWGG 1 cut(s) 876
BcoDI GTCTC 2 cut(s) 252, 512
BfaI CTAG 3 cut(s) 288, 563, 707
BfoI RGCGCY 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 560
BglI GCCNNNNNGGC 1 cut(s) 266
BisI GCNGC 3 cut(s) 390, 778, 792
BlpI GCTNAGC 1 cut(s) 229
BlsI GCNGC 3 cut(s) 391, 779, 793
BmcAI AGTACT 1 cut(s) 803
Bme1390I CCNGG 1 cut(s) 876
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 103, 259, 744
BmrFI CCNGG 1 cut(s) 876
BmsI GCATC 2 cut(s) 401, 491
BpiI GAAGAC 1 cut(s) 31
Bpu10I CCTNAGC 2 cut(s) 534, 762
Bpu1102I GCTNAGC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 352
Bsa29I ATCGAT 1 cut(s) 77
BsaHI GRCGYC 2 cut(s) 102, 129
BsaI GGTCTC 1 cut(s) 512
BsaJI CCNNGG 4 cut(s) 97, 235, 365, 541
BsaWI WCCGGW 1 cut(s) 826
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 503, 754
Bse1I ACTGG 1 cut(s) 517
Bse3DI GCAATG 1 cut(s) 614
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 1 cut(s) 876
BseCI ATCGAT 1 cut(s) 77
BseDI CCNNGG 4 cut(s) 97, 235, 365, 541
BseGI GGATG 3 cut(s) 45, 317, 482
BseLI CCNNNNNNNGG 3 cut(s) 124, 503, 754
BseMI GCAATG 1 cut(s) 614
BseMII CTCAG 4 cut(s) 165, 660, 753, 819
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 3 cut(s) 41, 97, 845
BseX3I CGGCCG 1 cut(s) 904
BseXI GCAGC 1 cut(s) 401
BsgI GTGCAG 1 cut(s) 408
Bsh1285I CGRYCG 1 cut(s) 907
BshFI GGCC 5 cut(s) 5, 370, 594, 735, 906
BshNI GGYRCC 2 cut(s) 101, 257
BshVI ATCGAT 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 907
BsiSI CCGG 2 cut(s) 827, 907
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 3 cut(s) 124, 503, 754
BsmAI GTCTC 2 cut(s) 252, 512
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 5 cut(s) 5, 370, 594, 735, 906
Bso31I GGTCTC 1 cut(s) 512
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 3 cut(s) 133, 191, 843
Bsp1720I GCTNAGC 1 cut(s) 229
BspACI CCGC 6 cut(s) 30, 56, 777, 792, 858, 879
BspANI GGCC 5 cut(s) 5, 370, 594, 735, 906
BspCNI CTCAG 4 cut(s) 166, 661, 754, 818
BspDI ATCGAT 1 cut(s) 77
BspEI TCCGGA 1 cut(s) 826
BspLI GGNNCC 3 cut(s) 103, 259, 744
BspMI ACCTGC 1 cut(s) 560
BspPI GGATC 2 cut(s) 199, 851
BspQI GCTCTTC 1 cut(s) 73
BspT107I GGYRCC 2 cut(s) 101, 257
BspTNI GGTCTC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 614
BsrI ACTGG 1 cut(s) 517
BssECI CCNNGG 4 cut(s) 97, 235, 365, 541
BssMI GATC 3 cut(s) 133, 191, 843
BssNAI GTATAC 1 cut(s) 850
BssNI GRCGYC 2 cut(s) 102, 129
BssT1I CCWWGG 3 cut(s) 235, 365, 541
Bst1107I GTATAC 1 cut(s) 850
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 3 cut(s) 352, 664, 854
Bst6I CTCTTC 1 cut(s) 73
BstACI GRCGYC 2 cut(s) 102, 129
BstAPI GCANNNNNTGC 1 cut(s) 398
BstC8I GCNNGC 3 cut(s) 529, 592, 630
BstDEI CTNAG 8 cut(s) 174, 229, 534, 669, 695, 762, 805, 839
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 3 cut(s) 45, 317, 482
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 3 cut(s) 136, 194, 846
BstMAI GTCTC 2 cut(s) 252, 512
BstMBI GATC 3 cut(s) 133, 191, 843
BstMCI CGRYCG 1 cut(s) 907
BstMWI GCNNNNNNNGC 4 cut(s) 11, 266, 398, 625
BstNI CCWGG 1 cut(s) 876
BstSCI CCNGG 1 cut(s) 874
BstV1I GCAGC 1 cut(s) 401
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 191
BstYI RGATCY 1 cut(s) 191
BstZ17I GTATAC 1 cut(s) 850
BstZI CGGCCG 1 cut(s) 904
Bsu15I ATCGAT 1 cut(s) 77
BsuRI GGCC 5 cut(s) 5, 370, 594, 735, 906
BsuTUI ATCGAT 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 3 cut(s) 45, 317, 482
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 510, 609, 669
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 3 cut(s) 529, 592, 630
CaiI CAGNNNCTG 1 cut(s) 668
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 242
ClaI ATCGAT 1 cut(s) 77
Csp6I GTAC 2 cut(s) 802, 872
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 1 cut(s) 404
CviQI GTAC 2 cut(s) 802, 872
DdeI CTNAG 8 cut(s) 174, 229, 534, 669, 695, 762, 805, 839
DinI GGCGCC 1 cut(s) 103
DpnI GATC 3 cut(s) 135, 193, 845
DpnII GATC 3 cut(s) 133, 191, 843
EaeI YGGCCR 2 cut(s) 3, 904
EagI CGGCCG 1 cut(s) 904
Eam1104I CTCTTC 1 cut(s) 73
EarI CTCTTC 1 cut(s) 73
EclXI CGGCCG 1 cut(s) 904
Eco130I CCWWGG 3 cut(s) 235, 365, 541
Eco147I AGGCCT 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 512
Eco47I GGWCC 1 cut(s) 242
Eco52I CGGCCG 1 cut(s) 904
Eco57I CTGAAG 1 cut(s) 606
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 3 cut(s) 235, 365, 541
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 3 cut(s) 235, 365, 541
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 1 cut(s) 407
FaqI GGGAC 1 cut(s) 414
FatI CATG 1 cut(s) 403
FauI CCCGC 1 cut(s) 63
FauNDI CATATG 2 cut(s) 652, 814
FblI GTMKAC 1 cut(s) 849
Fnu4HI GCNGC 3 cut(s) 390, 778, 792
FokI GGATG 3 cut(s) 32, 324, 469
Fsp4HI GCNGC 3 cut(s) 390, 778, 792
FspBI CTAG 3 cut(s) 288, 563, 707
GlaI GCGC 1 cut(s) 103
GluI GCNGC 3 cut(s) 390, 778, 792
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 5 cut(s) 5, 370, 594, 735, 906
HapII CCGG 2 cut(s) 827, 907
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 2 cut(s) 102, 129
Hin1II CATG 1 cut(s) 407
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 5 cut(s) 74, 413, 427, 607, 823
HpaII CCGG 2 cut(s) 827, 907
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 675, 850, 872
Hpy188I TCNGA 4 cut(s) 73, 127, 225, 691
Hpy188III TCNNGA 2 cut(s) 118, 827
Hpy8I GTNNAC 3 cut(s) 675, 850, 872
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 349, 710, 725
HpyCH4III ACNGT 3 cut(s) 352, 664, 854
HpyCH4IV ACGT 2 cut(s) 129, 868
HpyCH4V TGCA 9 cut(s) 85, 389, 419, 482, 527, 569, 602, 632, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 266, 398, 625
HpyF3I CTNAG 8 cut(s) 174, 229, 534, 669, 695, 762, 805, 839
HpySE526I ACGT 2 cut(s) 129, 868
Hsp92I GRCGYC 2 cut(s) 102, 129
Hsp92II CATG 1 cut(s) 407
HspAI GCGC 1 cut(s) 102
KasI GGCGCC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 3 cut(s) 133, 191, 843
LguI GCTCTTC 1 cut(s) 73
LmnI GCTCC 2 cut(s) 543, 896
LpnPI CCDG 9 cut(s) 76, 131, 498, 555, 576, 840, 861, 888, 920
Lsp1109I GCAGC 1 cut(s) 401
LweI GCATC 2 cut(s) 401, 491
MaeI CTAG 3 cut(s) 288, 563, 707
MaeII ACGT 2 cut(s) 129, 868
MalI GATC 3 cut(s) 135, 193, 845
MboI GATC 3 cut(s) 133, 191, 843
MboII GAAGA 2 cut(s) 31, 60
MflI RGATCY 1 cut(s) 191
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 154, 305, 460
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 436, 817
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 8 cut(s) 53, 59, 62, 115, 118, 233, 757, 823
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 359
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 342, 434
MslI CAYNNNNRTG 1 cut(s) 662
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 2 cut(s) 827, 907
MspR9I CCNGG 1 cut(s) 876
MvaI CCWGG 1 cut(s) 876
MwoI GCNNNNNNNGC 4 cut(s) 11, 266, 398, 625
NarI GGCGCC 1 cut(s) 102
NdeI CATATG 2 cut(s) 652, 814
NdeII GATC 3 cut(s) 133, 191, 843
NlaIII CATG 1 cut(s) 407
NlaIV GGNNCC 3 cut(s) 103, 259, 744
PceI AGGCCT 1 cut(s) 735
PciSI GCTCTTC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 3 cut(s) 74, 413, 607
PflMI CCANNNNNTGG 1 cut(s) 754
PkrI GCNGC 3 cut(s) 391, 779, 793
PleI GAGTC 2 cut(s) 435, 817
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 2 cut(s) 435, 817
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 3 cut(s) 103, 259, 744
PspPI GGNCC 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 668
PsuI RGATCY 1 cut(s) 191
RsaI GTAC 2 cut(s) 803, 873
RsaNI GTAC 2 cut(s) 802, 872
RseI CAYNNNNRTG 1 cut(s) 662
SapI GCTCTTC 1 cut(s) 73
SaqAI TTAA 2 cut(s) 342, 434
SatI GCNGC 3 cut(s) 390, 778, 792
Sau3AI GATC 3 cut(s) 133, 191, 843
Sau96I GGNCC 1 cut(s) 242
ScaI AGTACT 1 cut(s) 803
SchI GAGTC 2 cut(s) 436, 817
ScrFI CCNGG 1 cut(s) 876
SfaNI GCATC 2 cut(s) 401, 491
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
Sse9I AATT 3 cut(s) 154, 305, 460
SseBI AGGCCT 1 cut(s) 735
SsiI CCGC 6 cut(s) 30, 56, 777, 792, 858, 879
SspDI GGCGCC 1 cut(s) 101
SspI AATATT 1 cut(s) 784
SspMI CTAG 3 cut(s) 288, 563, 707
StuI AGGCCT 1 cut(s) 735
StyD4I CCNGG 1 cut(s) 874
StyI CCWWGG 3 cut(s) 235, 365, 541
TaaI ACNGT 3 cut(s) 352, 664, 854
TaiI ACGT 2 cut(s) 132, 871
TaqI TCGA 4 cut(s) 77, 132, 300, 610
TasI AATT 3 cut(s) 154, 305, 460
TatI WGTACW 1 cut(s) 801
TauI GCSGC 2 cut(s) 780, 794
TfiI GAWTC 3 cut(s) 74, 413, 607
Tru1I TTAA 2 cut(s) 342, 434
Tru9I TTAA 2 cut(s) 342, 434
TscAI CASTG 3 cut(s) 517, 609, 669
TseI GCWGC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 744, 879
TspGWI ACGGA 2 cut(s) 103, 234
TspRI CASTG 3 cut(s) 517, 609, 669
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 849
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 3 cut(s) 288, 563, 707
ZraI GACGTC 1 cut(s) 130
ZrmI AGTACT 1 cut(s) 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.