pycom16g12780

Desiccation-related protein PCC13-62-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003995
Physical Location & Seq
Forward (+)
9053170 .. 9054707
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGTGCATTGAACTCGTGAGCTCATCATCTGTAACCATGGCCACATTTGCTTATGCCACCACCAGCGCCATTGTCTTCCTCATCCTCCTCCCGCTGTCTTGCTCTTCCGAATCGATTTGGTACCACGGGGGCAACTCCTCCGTCCAGAAATCGGACGTCGATCTTTTGGAGTTTCCTTTGAATTTAGAGTATTTGGAAGCTGAGTTCTTTTTGTATGGCTCTTTGGGGTATGGCTTGGATAAAGTTTATCCGAGCTTAGCCCAAGGAGGTCCCTCTCCCATTGGTGCCAAAAAGGCACATTTGGACCACTTCACTAGGGATGTCATCGAGCAATTTGGATGGCAAGAAGTTGGACACTTGAGAGCTATTGAGAAAACTGTGAAGGGTTTCCCAAGGCCATTGTTGAATATAAGTGCAGCATCATTTGCTAATGTGTTTGATTCTGCATTTGGGAGTCCCTTAAATCCACCATTTGACCCTTATGCCAATTCAATCAACTATCTCCTTGCATCCTATATCATTCCTTATGTTGGTCTCACTGGCTATGTTGGTGCAAGCCCTAAGCTCCAAGGTGCTACTTCCAAAAGGCTAGTTGCAGGTCTTTTGGGTGTGGAATCAGGCCAAGATGCAGTGATTCGAGCATTGCTATACGAGCGCGCAGAGTTGAAAGTGGAACCATATGGCATTACAGTGGCTGAGTTCACAAATCGCATTTCGGAACTAAGGAATAAGCTAGGACACGCAGGTTTGAAAGATGAAGGCCTTGTGGTTCCCAAACAATTGGGTGCTGAGGGAAAAGTCAGCGGCAACATTCTCGCTGGAGACGAGTACTCACTTGCATATGGCAGGACTCCAGAGGAGATACTAAGGATCGTATATGGTAGCGGTAATGAACGTGTACCTGGCGGTTTCTACCCTAAAGGAGCTAACGGCCGGATTGCTAAATCTTATTTGAAAAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ferritin_2

Protein Analysis

322

Amino Acids

34.69

Weight (kDa)

6.02

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ferritin_2 PF13668 51 - 218 5e-36 Ferritin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
Acc36I ACCTGC 2 cut(s) 587, 734
Acc65I GGTACC 1 cut(s) 120
AccB1I GGYRCC 2 cut(s) 120, 284
AccII CGCG 1 cut(s) 657
AciI CCGC 4 cut(s) 92, 804, 885, 906
AclWI GGATC 1 cut(s) 878
AcoI YGGCCR 2 cut(s) 39, 931
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 3 cut(s) 122, 830, 900
AfiI CCNNNNNNNGG 2 cut(s) 151, 530
AflIII ACRYGT 1 cut(s) 895
AgsI TTSAA 7 cut(s) 11, 181, 406, 492, 667, 751, 955
AjnI CCWGG 1 cut(s) 901
AloI GAACNNNNNNTCC 2 cut(s) 188, 220
AluBI AGCT 7 cut(s) 21, 200, 255, 365, 565, 733, 926
AluI AGCT 7 cut(s) 21, 200, 255, 365, 565, 733, 926
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 2 cut(s) 539, 816
AlwI GGATC 1 cut(s) 878
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 5 cut(s) 39, 395, 619, 760, 931
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 386
Asp718I GGTACC 1 cut(s) 120
AspLEI GCGC 3 cut(s) 68, 657, 659
AspS9I GGNCC 2 cut(s) 269, 304
AvaII GGWCC 2 cut(s) 269, 304
BalI TGGCCA 1 cut(s) 41
BanI GGYRCC 2 cut(s) 120, 284
BanII GRGCYC 1 cut(s) 23
BauI CACGAG 1 cut(s) 14
BbsI GAAGAC 1 cut(s) 67
Bbv12I GWGCWC 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 1 cut(s) 428
BccI CCATC 1 cut(s) 333
BceAI ACGGC 1 cut(s) 946
BcgI CGANNNNNNTGC 3 cut(s) 29, 796, 830
BciT130I CCWGG 1 cut(s) 903
BcoDI GTCTC 2 cut(s) 539, 816
BfaI CTAG 3 cut(s) 315, 590, 734
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 2 cut(s) 587, 734
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 2 cut(s) 417, 805
BlpI GCTNAGC 1 cut(s) 256
BlsI GCNGC 2 cut(s) 418, 806
BmcAI AGTACT 1 cut(s) 830
Bme1390I CCNGG 1 cut(s) 903
Bme18I GGWCC 2 cut(s) 269, 304
BmgT120I GGNCC 2 cut(s) 269, 304
BmiI GGNNCC 5 cut(s) 122, 271, 286, 675, 771
BmrFI CCNGG 1 cut(s) 903
BmsI GCATC 3 cut(s) 428, 518, 616
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 2 cut(s) 837, 840
Bpu10I CCTNAGC 2 cut(s) 561, 789
Bpu1102I GCTNAGC 1 cut(s) 256
BpuEI CTTGAG 1 cut(s) 379
Bsa29I ATCGAT 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 36, 124, 262, 392, 568
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 530
Bse1I ACTGG 1 cut(s) 544
Bse3DI GCAATG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 903
BseCI ATCGAT 1 cut(s) 113
BseDI CCNNGG 5 cut(s) 36, 124, 262, 392, 568
BseGI GGATG 4 cut(s) 81, 325, 344, 509
BseLI CCNNNNNNNGG 2 cut(s) 151, 530
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 3 cut(s) 192, 687, 780
BseNI ACTGG 1 cut(s) 544
BsePI GCGCGC 1 cut(s) 655
BseRI GAGGAG 3 cut(s) 77, 127, 872
BseX3I CGGCCG 1 cut(s) 931
BseXI GCAGC 1 cut(s) 428
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 657
Bsh1285I CGRYCG 1 cut(s) 934
BshFI GGCC 5 cut(s) 41, 397, 621, 762, 933
BshNI GGYRCC 2 cut(s) 120, 284
BshVI ATCGAT 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 934
BsiHKAI GWGCWC 1 cut(s) 23
BsiSI CCGG 1 cut(s) 934
BslFI GGGAC 2 cut(s) 255, 441
BslI CCNNNNNNNGG 2 cut(s) 151, 530
BsmAI GTCTC 2 cut(s) 539, 816
BsmBI CGTCTC 1 cut(s) 816
BsmFI GGGAC 2 cut(s) 255, 441
BsnI GGCC 5 cut(s) 41, 397, 621, 762, 933
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 2 cut(s) 160, 870
Bsp1720I GCTNAGC 1 cut(s) 256
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 4 cut(s) 92, 804, 885, 906
BspANI GGCC 5 cut(s) 41, 397, 621, 762, 933
BspCNI CTCAG 3 cut(s) 193, 688, 781
BspDI ATCGAT 1 cut(s) 113
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 5 cut(s) 122, 271, 286, 675, 771
BspMI ACCTGC 2 cut(s) 587, 734
BspPI GGATC 1 cut(s) 878
BspQI GCTCTTC 1 cut(s) 109
BspT107I GGYRCC 2 cut(s) 120, 284
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 641
BsrI ACTGG 1 cut(s) 544
BssECI CCNNGG 5 cut(s) 36, 124, 262, 392, 568
BssHII GCGCGC 1 cut(s) 655
BssMI GATC 2 cut(s) 160, 870
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 4 cut(s) 36, 262, 392, 568
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 2 cut(s) 379, 691
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 156
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 556, 657
BstDEI CTNAG 7 cut(s) 201, 256, 561, 696, 722, 789, 866
BstDSI CCRYGG 2 cut(s) 36, 124
BstF5I GGATG 4 cut(s) 81, 325, 344, 509
BstFNI CGCG 1 cut(s) 657
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 3 cut(s) 68, 657, 659
BstKTI GATC 2 cut(s) 163, 873
BstMAI GTCTC 2 cut(s) 539, 816
BstMBI GATC 2 cut(s) 160, 870
BstMCI CGRYCG 1 cut(s) 934
BstMWI GCNNNNNNNGC 4 cut(s) 47, 293, 425, 652
BstNI CCWGG 1 cut(s) 903
BstSCI CCNGG 1 cut(s) 901
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 781
BstZI CGGCCG 1 cut(s) 931
Bsu15I ATCGAT 1 cut(s) 113
BsuRI GGCC 5 cut(s) 41, 397, 621, 762, 933
BsuTUI ATCGAT 1 cut(s) 113
BtgI CCRYGG 2 cut(s) 36, 124
BtsCI GGATG 4 cut(s) 81, 325, 344, 509
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 3 cut(s) 537, 636, 696
BveI ACCTGC 2 cut(s) 587, 734
Cac8I GCNNGC 2 cut(s) 556, 657
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 3 cut(s) 68, 657, 659
Cfr13I GGNCC 2 cut(s) 269, 304
ClaI ATCGAT 1 cut(s) 113
Csp6I GTAC 3 cut(s) 121, 829, 899
CviAII CATG 1 cut(s) 37
CviQI GTAC 3 cut(s) 121, 829, 899
DdeI CTNAG 7 cut(s) 201, 256, 561, 696, 722, 789, 866
DpnI GATC 2 cut(s) 162, 872
DpnII GATC 2 cut(s) 160, 870
EaeI YGGCCR 2 cut(s) 39, 931
EagI CGGCCG 1 cut(s) 931
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 21
EclXI CGGCCG 1 cut(s) 931
Eco130I CCWWGG 4 cut(s) 36, 262, 392, 568
Eco147I AGGCCT 1 cut(s) 762
Eco24I GRGCYC 1 cut(s) 23
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 2 cut(s) 269, 304
Eco52I CGGCCG 1 cut(s) 931
Eco53kI GAGCTC 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 901
EcoT14I CCWWGG 4 cut(s) 36, 262, 392, 568
EcoT38I GRGCYC 1 cut(s) 23
ErhI CCWWGG 4 cut(s) 36, 262, 392, 568
Esp3I CGTCTC 1 cut(s) 816
FaeI CATG 1 cut(s) 40
FaqI GGGAC 2 cut(s) 255, 441
FatI CATG 1 cut(s) 36
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 2 cut(s) 679, 841
Fnu4HI GCNGC 2 cut(s) 417, 805
FokI GGATG 4 cut(s) 68, 332, 351, 496
FriOI GRGCYC 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 417, 805
FspBI CTAG 3 cut(s) 315, 590, 734
GlaI GCGC 3 cut(s) 67, 656, 658
GluI GCNGC 2 cut(s) 417, 805
GsuI CTGGAG 2 cut(s) 837, 840
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 5 cut(s) 41, 397, 621, 762, 933
HapII CCGG 1 cut(s) 934
HhaI GCGC 3 cut(s) 68, 657, 659
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 3 cut(s) 66, 655, 657
HinP1I GCGC 3 cut(s) 66, 655, 657
HinfI GANTC 6 cut(s) 110, 440, 454, 614, 634, 850
HpaII CCGG 1 cut(s) 934
Hpy166II GTNNAC 2 cut(s) 702, 899
Hpy188I TCNGA 4 cut(s) 109, 154, 252, 718
Hpy188III TCNNGA 3 cut(s) 16, 145, 854
Hpy8I GTNNAC 2 cut(s) 702, 899
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 376, 752
HpyCH4III ACNGT 2 cut(s) 379, 691
HpyCH4IV ACGT 2 cut(s) 156, 895
HpyCH4V TGCA 8 cut(s) 6, 416, 446, 509, 554, 596, 629, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 293, 425, 652
HpyF3I CTNAG 7 cut(s) 201, 256, 561, 696, 722, 789, 866
HpySE526I ACGT 2 cut(s) 156, 895
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 3 cut(s) 66, 655, 657
KpnI GGTACC 1 cut(s) 124
Kzo9I GATC 2 cut(s) 160, 870
LguI GCTCTTC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 570, 923
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 3 cut(s) 428, 518, 616
MaeI CTAG 3 cut(s) 315, 590, 734
MaeII ACGT 2 cut(s) 156, 895
MaeIII GTNAC 1 cut(s) 31
MalI GATC 2 cut(s) 162, 872
MboI GATC 2 cut(s) 160, 870
MboII GAAGA 2 cut(s) 67, 96
MfeI CAATTG 1 cut(s) 779
MhlI GDGCHC 1 cut(s) 23
MlsI TGGCCA 1 cut(s) 41
MluCI AATT 4 cut(s) 181, 332, 487, 779
MluNI TGGCCA 1 cut(s) 41
MlyI GAGTC 2 cut(s) 463, 844
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 8 cut(s) 89, 95, 98, 148, 260, 283, 784, 850
Mox20I TGGCCA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 386
MscI TGGCCA 1 cut(s) 41
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 1 cut(s) 689
Msp20I TGGCCA 1 cut(s) 41
MspA1I CMGCKG 2 cut(s) 94, 804
MspI CCGG 1 cut(s) 934
MspR9I CCNGG 1 cut(s) 903
MunI CAATTG 1 cut(s) 779
MvaI CCWGG 1 cut(s) 903
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 4 cut(s) 47, 293, 425, 652
NcoI CCATGG 1 cut(s) 36
NdeI CATATG 2 cut(s) 679, 841
NdeII GATC 2 cut(s) 160, 870
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 5 cut(s) 122, 271, 286, 675, 771
PauI GCGCGC 1 cut(s) 655
PceI AGGCCT 1 cut(s) 762
PciSI GCTCTTC 1 cut(s) 109
PcsI WCGNNNNNNNCGW 1 cut(s) 822
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 4 cut(s) 110, 440, 614, 634
PkrI GCNGC 2 cut(s) 418, 806
PleI GAGTC 2 cut(s) 462, 844
PpsI GAGTC 2 cut(s) 462, 844
PpuMI RGGWCCY 1 cut(s) 269
Psp124BI GAGCTC 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 901
PspGI CCWGG 1 cut(s) 901
PspN4I GGNNCC 5 cut(s) 122, 271, 286, 675, 771
PspPI GGNCC 2 cut(s) 269, 304
PspPPI RGGWCCY 1 cut(s) 269
PstNI CAGNNNCTG 1 cut(s) 695
PteI GCGCGC 1 cut(s) 655
RsaI GTAC 3 cut(s) 122, 830, 900
RsaNI GTAC 3 cut(s) 121, 829, 899
RseI CAYNNNNRTG 1 cut(s) 689
SacI GAGCTC 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 2 cut(s) 417, 805
Sau3AI GATC 2 cut(s) 160, 870
Sau96I GGNCC 2 cut(s) 269, 304
ScaI AGTACT 1 cut(s) 830
SchI GAGTC 2 cut(s) 463, 844
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 1 cut(s) 23
SfaNI GCATC 3 cut(s) 428, 518, 616
SinI GGWCC 2 cut(s) 269, 304
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 4 cut(s) 181, 332, 487, 779
SseBI AGGCCT 1 cut(s) 762
SsiI CCGC 4 cut(s) 92, 804, 885, 906
SspMI CTAG 3 cut(s) 315, 590, 734
SstI GAGCTC 1 cut(s) 23
StuI AGGCCT 1 cut(s) 762
StyD4I CCNGG 1 cut(s) 901
StyI CCWWGG 4 cut(s) 36, 262, 392, 568
TaaI ACNGT 2 cut(s) 379, 691
TaiI ACGT 2 cut(s) 159, 898
TaqI TCGA 4 cut(s) 113, 159, 327, 637
TasI AATT 4 cut(s) 181, 332, 487, 779
TatI WGTACW 1 cut(s) 828
TauI GCSGC 1 cut(s) 807
TfiI GAWTC 4 cut(s) 110, 440, 614, 634
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 3 cut(s) 544, 636, 696
TseI GCWGC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 771, 906
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 3 cut(s) 544, 636, 696
VpaK11BI GGWCC 2 cut(s) 269, 304
XapI RAATTY 1 cut(s) 181
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 3 cut(s) 315, 590, 734
ZraI GACGTC 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.