Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001387

Physical Location & Seq

Genomic Coordinates Reverse (-)

11560880 .. 11561602

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGAGTGGCGGGTACTGCAGCTCAAGCATCATATGGTGTGAACCCGTATGGATCAGTTGGGATGATGCAATCTCCTACTCAGCCAGCAGGTCCTTCTGCCTCGTCTCAGCTTGCACAACACCAGCTAGCTTATCAGCACATCCACCAGCAACAACAACAGCAACTGCAGCAACAACTCCAAAAATTTTGGGGAGAGCAGCATAAAGAAATTGATGAAACTAATGATTTCAAAAACCATAGTTTGCCATTGGCCAGGATTAAGAAGATTATGAAGGCGGATGAGGATGTGAGGATGATATCAGCCGAAGCTCCTGTCATATTTGCTAGGGCCTGTGAGATGTTCATTCTAGAGTTGACAATGCGGTCTTGGAATCACACTGAGGAGAACAAAAGAAGAACACTGCAAAAGAACGACATCGCAGCAGCAATTACGCGGACTGATATATTTGACTTTCTAGTTGATATCGTCCCAAGAGAGGATTTGAAAGATGAAGTACTTGCATCAATCCCAAGAGGTGGGAATCTCCCAGTTGGGGGTCCGTCTGATGGTGTTCCTTACTATTACATGCCTCCTCAGCATGCTCCACAGGTTGGTGCTCCGGGGATGATAGTGGGAAAGCCTGCGATGGATCAGAATCTGTATGGCCAACAGACACATCCGTACATTGCTCAGCCAACATGGCCACATCAACAACAGCAACCGCACGAAGATATCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

241

Amino Acids

26.9

Weight (kDa)

5.78

Isoelectric Point (pI)

57.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	72 - 144	2.5e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	81 - 144	1.8e-17	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001387)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08970 AT1G08970 AT1G08970 AT1G08970 AT1G54830 AT1G54830 AT1G54830
fragaria_vesca	FvH4_4g14750 FvH4_6g05540 FvH4_6g05540
malus_domestica	MD04G1207500.v1.1 MD12G1221800.v1.1 MD13G1185200.v1.1 MD16G1185900.v1.1
prunus_persica	Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.1G152500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1 Prupe.6G328500_v2.0.a1
pyrus_communis	pycom04g18370 pycom12g20790 pycom13g15980 pycom16g15560
rosa_chinensis	RchiOBHm_Chr3g0454311 RchiOBHm_Chr4g0417851
rosa_laevigata	RLG00000007894 RLG00000025463
rosa_multiflora	Rmu_sc0001340.1_g000002 Rmu_sc0004911.1_g000014 Rmu_sc0005844.1_g000004 Rmu_sc0007543.1_g000006
rosa_roxburghii	Rroxscaffold_165G00437130 Rroxscaffold_5G00361270 Rroxscaffold_6G00425220
rosa_rugosa	Rorug02G0654100 Rorug04G0149700.1 Rorug04G0149800
rosa_samantha	Rh3AG058100 Rh3BG059800 Rh3CG059000 Rh3CG291100 Rh3DG060300 Rh4AG212100 Rh4BG218900 Rh4CG223100 Rh4DG209900
rosa_wichuraiana	Rw3G004450 Rw3G023190 Rw4G017990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	364
Acc36I	ACCTGC	1 cut(s)	80
AccB7I	CCANNNNNTGG	2 cut(s)	518, 593
AccII	CGCG	1 cut(s)	436
AciI	CCGC	5 cut(s)	11, 278, 364, 436, 704
AclWI	GGATC	2 cut(s)	61, 639
AcoI	YGGCCR	3 cut(s)	252, 646, 683
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	3 cut(s)	16, 498, 665
AfiI	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
AgsI	TTSAA	2 cut(s)	232, 487
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	5 cut(s)	23, 112, 127, 131, 311
AluI	AGCT	5 cut(s)	23, 112, 127, 131, 311
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	61, 639
AlwNI	CAGNNNCTG	2 cut(s)	166, 640
AoxI	GGCC	4 cut(s)	252, 330, 646, 683
ApeKI	GCWGC	5 cut(s)	20, 169, 199, 422, 425
ApoI	RAATTY	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AspS9I	GGNCC	3 cut(s)	92, 330, 539
AsuC2I	CCSGG	1 cut(s)	603
AsuNHI	GCTAGC	1 cut(s)	127
AvaII	GGWCC	2 cut(s)	92, 539
BalI	TGGCCA	3 cut(s)	254, 648, 685
Bbv12I	GWGCWC	1 cut(s)	601
BbvCI	CCTCAGC	1 cut(s)	576
BbvI	GCAGC	5 cut(s)	32, 181, 211, 434, 437
BccI	CCATC	2 cut(s)	542, 622
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	4 cut(s)	128, 327, 350, 458
BfmI	CTRYAG	2 cut(s)	18, 167
BfuAI	ACCTGC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	682
BisI	GCNGC	5 cut(s)	21, 170, 200, 423, 426
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	5 cut(s)	22, 171, 201, 424, 427
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	2 cut(s)	256, 603
Bme18I	GGWCC	2 cut(s)	92, 539
BmgT120I	GGNCC	3 cut(s)	92, 330, 539
BmiI	GGNNCC	1 cut(s)	540
BmrFI	CCNGG	2 cut(s)	256, 603
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	3 cut(s)	38, 57, 512
BmtI	GCTAGC	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	524
Bpu10I	CCTNAGC	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	9
BpuMI	CCSGG	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	636
BsaJI	CCNNGG	1 cut(s)	602
Bsc4I	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
Bse1I	ACTGG	1 cut(s)	530
Bse3DI	GCAATG	1 cut(s)	666
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	602
BseGI	GGATG	7 cut(s)	69, 141, 286, 292, 300, 612, 658
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
BseMI	GCAATG	1 cut(s)	666
BseMII	CTCAG	5 cut(s)	95, 122, 372, 590, 686
BseNI	ACTGG	1 cut(s)	530
BseRI	GAGGAG	2 cut(s)	398, 564
BseXI	GCAGC	5 cut(s)	32, 181, 211, 434, 437
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	4 cut(s)	254, 332, 648, 685
BsiHKAI	GWGCWC	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	6 cut(s)	478, 518, 535, 536, 548, 593
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	4 cut(s)	254, 332, 648, 685
Bsp1286I	GDGCHC	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	53, 631
Bsp1720I	GCTNAGC	1 cut(s)	672
BspACI	CCGC	5 cut(s)	11, 278, 364, 436, 704
BspANI	GGCC	4 cut(s)	254, 332, 648, 685
BspCNI	CTCAG	5 cut(s)	94, 121, 373, 589, 685
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	540
BspMAI	CTGCAG	2 cut(s)	22, 171
BspMI	ACCTGC	1 cut(s)	80
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	61, 639
BsrDI	GCAATG	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	602
BssMI	GATC	2 cut(s)	53, 631
Bst2UI	CCWGG	1 cut(s)	256
BstC8I	GCNNGC	5 cut(s)	87, 114, 129, 582, 624
BstDEI	CTNAG	5 cut(s)	81, 108, 381, 576, 672
BstF5I	GGATG	7 cut(s)	69, 141, 286, 292, 300, 612, 658
BstFNI	CGCG	1 cut(s)	436
BstKTI	GATC	2 cut(s)	56, 634
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	53, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 26, 169, 577, 682
BstNI	CCWGG	1 cut(s)	256
BstNSI	RCATGY	2 cut(s)	571, 584
BstSCI	CCNGG	2 cut(s)	254, 601
BstSFI	CTRYAG	2 cut(s)	18, 167
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	5 cut(s)	32, 181, 211, 434, 437
BsuRI	GGCC	4 cut(s)	254, 332, 648, 685
BtgZI	GCGATG	2 cut(s)	403, 641
BtsCI	GGATG	7 cut(s)	69, 141, 286, 292, 300, 612, 658
BtsI	GCAGTG	1 cut(s)	401
BtsIMutI	CAGTG	2 cut(s)	378, 401
BveI	ACCTGC	1 cut(s)	80
Cac8I	GCNNGC	5 cut(s)	87, 114, 129, 582, 624
CaiI	CAGNNNCTG	2 cut(s)	166, 640
Cfr13I	GGNCC	3 cut(s)	92, 330, 539
Csp6I	GTAC	3 cut(s)	15, 497, 664
CviAII	CATG	3 cut(s)	568, 581, 681
CviQI	GTAC	3 cut(s)	15, 497, 664
DdeI	CTNAG	5 cut(s)	81, 108, 381, 576, 672
DpnI	GATC	2 cut(s)	55, 633
DpnII	GATC	2 cut(s)	53, 631
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EaeI	YGGCCR	3 cut(s)	252, 646, 683
EciI	GGCGGA	1 cut(s)	293
Eco32I	GATATC	3 cut(s)	300, 466, 715
Eco47I	GGWCC	2 cut(s)	92, 539
EcoO109I	RGGNCCY	2 cut(s)	92, 330
EcoRII	CCWGG	1 cut(s)	254
EcoRV	GATATC	3 cut(s)	300, 466, 715
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	571, 584, 684
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	3 cut(s)	567, 580, 680
FauI	CCCGC	1 cut(s)	4
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	5 cut(s)	21, 170, 200, 423, 426
FokI	GGATG	7 cut(s)	76, 128, 293, 299, 307, 619, 645
Fsp4HI	GCNGC	5 cut(s)	21, 170, 200, 423, 426
FspBI	CTAG	4 cut(s)	128, 327, 350, 458
GluI	GCNGC	5 cut(s)	21, 170, 200, 423, 426
HaeIII	GGCC	4 cut(s)	254, 332, 648, 685
HapII	CCGG	1 cut(s)	602
Hin1II	CATG	3 cut(s)	571, 584, 684
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	373, 523, 637
HpaII	CCGG	1 cut(s)	602
Hpy166II	GTNNAC	2 cut(s)	43, 357
Hpy188I	TCNGA	2 cut(s)	547, 636
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	2 cut(s)	43, 357
HpyAV	CCTTC	2 cut(s)	105, 268
HpyCH4V	TGCA	6 cut(s)	20, 70, 116, 169, 406, 503
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 26, 169, 577, 682
HpyF3I	CTNAG	5 cut(s)	81, 108, 381, 576, 672
Hsp92II	CATG	3 cut(s)	571, 584, 684
Kzo9I	GATC	2 cut(s)	53, 631
LmnI	GCTCC	3 cut(s)	316, 589, 604
Lsp1109I	GCAGC	5 cut(s)	32, 181, 211, 434, 437
LweI	GCATC	3 cut(s)	38, 57, 512
MaeI	CTAG	4 cut(s)	128, 327, 350, 458
MalI	GATC	2 cut(s)	55, 633
MboI	GATC	2 cut(s)	53, 631
MboII	GAAGA	3 cut(s)	277, 408, 722
MhlI	GDGCHC	1 cut(s)	601
MlsI	TGGCCA	3 cut(s)	254, 648, 685
MluCI	AATT	3 cut(s)	185, 210, 429
MluNI	TGGCCA	3 cut(s)	254, 648, 685
MnlI	CCTC	8 cut(s)	112, 277, 285, 376, 472, 509, 582, 585
Mox20I	TGGCCA	3 cut(s)	254, 648, 685
MscI	TGGCCA	3 cut(s)	254, 648, 685
MseI	TTAA	1 cut(s)	261
Msp20I	TGGCCA	3 cut(s)	254, 648, 685
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	256, 603
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	5 cut(s)	17, 26, 169, 577, 682
NciI	CCSGG	1 cut(s)	603
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	2 cut(s)	53, 631
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	571, 584, 684
NlaIV	GGNNCC	1 cut(s)	540
NspI	RCATGY	2 cut(s)	571, 584
PaeI	GCATGC	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	373, 523, 637
PflMI	CCANNNNNTGG	2 cut(s)	518, 593
PkrI	GCNGC	5 cut(s)	22, 171, 201, 424, 427
PpuMI	RGGWCCY	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	540
PspPI	GGNCC	3 cut(s)	92, 330, 539
PspPPI	RGGWCCY	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	22, 171
PstNI	CAGNNNCTG	2 cut(s)	166, 640
RsaI	GTAC	3 cut(s)	16, 498, 665
RsaNI	GTAC	3 cut(s)	15, 497, 664
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	5 cut(s)	21, 170, 200, 423, 426
Sau3AI	GATC	2 cut(s)	53, 631
Sau96I	GGNCC	3 cut(s)	92, 330, 539
ScaI	AGTACT	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	256, 603
SduI	GDGCHC	1 cut(s)	601
SetI	ASST	8 cut(s)	25, 94, 114, 129, 133, 313, 520, 594
SfaNI	GCATC	3 cut(s)	38, 57, 512
SfcI	CTRYAG	2 cut(s)	18, 167
SinI	GGWCC	2 cut(s)	92, 539
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	3 cut(s)	185, 210, 429
SsiI	CCGC	5 cut(s)	11, 278, 364, 436, 704
SspMI	CTAG	4 cut(s)	128, 327, 350, 458
StyD4I	CCNGG	2 cut(s)	254, 601
TaqI	TCGA	1 cut(s)	717
TasI	AATT	3 cut(s)	185, 210, 429
TatI	WGTACW	1 cut(s)	496
TfiI	GAWTC	3 cut(s)	373, 523, 637
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	2 cut(s)	385, 408
TseI	GCWGC	5 cut(s)	20, 169, 199, 422, 425
TspDTI	ATGAA	4 cut(s)	231, 287, 334, 507
TspGWI	ACGGA	2 cut(s)	531, 651
TspRI	CASTG	2 cut(s)	385, 408
Van91I	CCANNNNNTGG	2 cut(s)	518, 593
VpaK11BI	GGWCC	2 cut(s)	92, 539
XapI	RAATTY	1 cut(s)	185
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	2 cut(s)	571, 584
XspI	CTAG	4 cut(s)	128, 327, 350, 458
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.