Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000367

Physical Location & Seq

Genomic Coordinates Reverse (-)

11902836 .. 11904783

Gene Structure 1948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATCGATCCGGAATTCCTTGAGATTCTCGAGGCAAGTCGGGCTGCTAAAGAAGTGAAGCATCCCTTCAGAAATCTCCTTAAGCGTAAAAACAGACCTCAACTGATCATTACAATTTTCTTGCAGTTCTTCCAGCAATTCACAGGCATTAACTCAATCAATTTTTACGCTCCAGTTTTGTTCCAGACCTTGGGATTTAAGAATGATGCTTCCCTTTACTCATCAGTTATTACAGGCGTTATCATGGTTCTCGGAGCCATTATTTCAATTTACTTTGTCGACAAAGCTGGTCGCCGCGTGCTCTTGATTGAAGGTGGCATCCAAATGTTCCTCTCTCATGTGGTCGTTGCAATCATACTTGGGATGAAACTTAAGGATCGATCAAACGACCTCGATCACGGCTTGGGAATTCTTGTGGTTATTGTAGTCTGTTCTTTTGTGGGTTCCTTTGGATGGTCTTGGGGGCCTCTTTGCTGGTTGGTTGCCAGTGAGATATTCCCTCTAGAGGCTCGCTCAGCCGGGCAGAGTGTGACTGTGTCTGTAAACATGTTGTTCACATTTGTTATAGCACAGGCCTTCCTCTCAATGCTTTGTCACATGAAGTTTGCTATTTTCTTATTCTTCGCAGCGTGGGTCTTCCTCATGACAGTCTTCGTCTTCTTTTTACTTCCGGAGACTAAAGGTGTCCCTATCGAAGAAATGGCAGACGTAGTGTGGAGGGAGCATTGGTATTGGAAGAGATATATGGATGACTGCGAAGATGATCCTAAGGGACATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

261

Amino Acids

29.61

Weight (kDa)

6.59

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26340
fragaria_vesca	FvH4_2g38270 FvH4_4g15150 FvH4_4g15160 FvH4_4g15170 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15180 FvH4_4g15220 FvH4_4g15221
malus_domestica	MD13G1189100.v1.1 MD13G1189500.v1.1 MD13G1189600.v1.1 MD13G1189800.v1.1 MD13G1190100.v1.1 MD13G1190200.v1.1 MD13G1190300.v1.1 MD16G1189900.v1.1 MD16G1190000.v1.1 MD16G1190100.v1.1 MD16G1190300.v1.1
prunus_persica	Prupe.1G156300_v2.0.a1 Prupe.1G156300_v2.0.a1 Prupe.1G156400_v2.0.a1 Prupe.1G156500_v2.0.a1 Prupe.1G156600_v2.0.a1 Prupe.1G156700_v2.0.a1 Prupe.1G156800_v2.0.a1 Prupe.1G156900_v2.0.a1 Prupe.1G157000_v2.0.a1
pyrus_communis	pycom13g16350 pycom13g16370 pycom13g16380 pycom16g15990 pycom16g16010 pycom16g16020
rosa_chinensis	RchiOBHm_Chr4g0413631 RchiOBHm_Chr4g0416271 RchiOBHm_Chr4g0416631 RchiOBHm_Chr4g0416651 RchiOBHm_Chr4g0416671 RchiOBHm_Chr4g0416681 RchiOBHm_Chr4g0416691 RchiOBHm_Chr4g0416721
rosa_laevigata	RLG00000007958 RLG00000007959 RLG00000007960 RLG00000007961 RLG00000007963 RLG00000007964 RLG00000008204
rosa_multiflora	Rmu_ssc0000377.1_g000001 Rmu_ssc0000377.1_g000007 Rmu_ssc0000377.1_g000017 Rmu_ssc0000377.1_g000025 Rmu_ssc0000377.1_g000041 Rmu_ssc0000377.1_g000043
rosa_roxburghii	Rroxscaffold_5G00357580 Rroxscaffold_5G00360530 Rroxscaffold_5G00360560 Rroxscaffold_5G00360580 Rroxscaffold_5G00360590
rosa_rugosa	Rorug04G0121900 Rorug04G0143800 Rorug04G0143900 Rorug04G0144000 Rorug04G0144000 Rorug04G0144100
rosa_samantha	Rh4AG181300 Rh4AG206000 Rh4AG206100 Rh4AG206200 Rh4AG206300 Rh4AG206500 Rh4AG206700 Rh4BG180600 Rh4BG203400 Rh4BG203500 Rh4BG203600 Rh4BG203700 Rh4BG203800 Rh4BG203900 Rh4BG204000 Rh4CG192500 Rh4CG216900 Rh4CG217200 Rh4CG217500 Rh4CG217700 Rh4CG217800 Rh4DG176700 Rh4DG202900 Rh4DG203000 Rh4DG203200 Rh4DG203300 Rh4DG203900
rosa_wichuraiana	Rw4G015160 Rw4G017430 Rw4G017440 Rw4G017450 Rw4G017460 Rw4G017480 Rw4G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	297
AccIII	TCCGGA	2 cut(s)	10, 670
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	3 cut(s)	2, 384, 758
AcsI	RAATTY	2 cut(s)	14, 408
AcuI	CTGAAG	1 cut(s)	52
AfiI	CCNNNNNNNGG	3 cut(s)	190, 453, 505
AflII	CTTAAG	2 cut(s)	80, 371
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	2 cut(s)	267, 311
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	668
AlwI	GGATC	3 cut(s)	2, 384, 758
Ama87I	CYCGRG	1 cut(s)	29
Aor13HI	TCCGGA	2 cut(s)	10, 670
AoxI	GGCC	2 cut(s)	464, 573
ApeKI	GCWGC	2 cut(s)	44, 626
ApoI	RAATTY	2 cut(s)	14, 408
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	768
BbsI	GAAGAC	3 cut(s)	628, 643, 649
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	2 cut(s)	31, 638
BccI	CCATC	1 cut(s)	447
BceAI	ACGGC	1 cut(s)	415
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	668
BfaI	CTAG	1 cut(s)	503
BfrI	CTTAAG	2 cut(s)	80, 371
BisI	GCNGC	3 cut(s)	45, 295, 627
BlpI	GCTNAGC	1 cut(s)	514
BlsI	GCNGC	3 cut(s)	46, 296, 628
Bme1390I	CCNGG	1 cut(s)	520
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	3 cut(s)	256, 445, 465
BmrFI	CCNGG	1 cut(s)	520
BmsI	GCATC	3 cut(s)	70, 196, 327
BpiI	GAAGAC	3 cut(s)	628, 643, 649
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	520
Bsa29I	ATCGAT	2 cut(s)	6, 379
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	10, 670
BsaXI	ACNNNNNCTCC	2 cut(s)	713, 743
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 453, 505
Bse1I	ACTGG	2 cut(s)	173, 486
Bse21I	CCTNAGG	1 cut(s)	768
BseAI	TCCGGA	2 cut(s)	10, 670
BseCI	ATCGAT	2 cut(s)	6, 379
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	5 cut(s)	61, 318, 369, 458, 754
BseLI	CCNNNNNNNGG	3 cut(s)	190, 453, 505
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	2 cut(s)	173, 486
BseXI	GCAGC	2 cut(s)	31, 638
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	466, 575
BshVI	ATCGAT	2 cut(s)	6, 379
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	11, 519, 671
BslFI	GGGAC	1 cut(s)	671
BslI	CCNNNNNNNGG	3 cut(s)	190, 453, 505
BsmAI	GTCTC	1 cut(s)	668
BsmFI	GGGAC	1 cut(s)	671
BsnI	GGCC	2 cut(s)	466, 575
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp13I	TCCGGA	2 cut(s)	10, 670
Bsp143I	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
Bsp1720I	GCTNAGC	1 cut(s)	514
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	466, 575
BspCNI	CTCAG	1 cut(s)	527
BspDI	ATCGAT	2 cut(s)	6, 379
BspEI	TCCGGA	2 cut(s)	10, 670
BspFNI	CGCG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	3 cut(s)	256, 445, 465
BspPI	GGATC	3 cut(s)	2, 384, 758
BspTI	CTTAAG	2 cut(s)	80, 371
BsrI	ACTGG	2 cut(s)	173, 486
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	535, 649
Bst6I	CTCTTC	1 cut(s)	731
BstAFI	CTTAAG	2 cut(s)	80, 371
BstC8I	GCNNGC	2 cut(s)	299, 511
BstDEI	CTNAG	2 cut(s)	514, 768
BstF5I	GGATG	5 cut(s)	61, 318, 369, 458, 754
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	7 cut(s)	6, 10, 108, 379, 383, 397, 766
BstMAI	GTCTC	1 cut(s)	668
BstMBI	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 515
BstNSI	RCATGY	2 cut(s)	550, 779
BstSCI	CCNGG	1 cut(s)	518
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	31, 638
BstV2I	GAAGAC	3 cut(s)	628, 643, 649
Bsu15I	ATCGAT	2 cut(s)	6, 379
Bsu36I	CCTNAGG	1 cut(s)	768
BsuRI	GGCC	2 cut(s)	466, 575
BsuTUI	ATCGAT	2 cut(s)	6, 379
BtsCI	GGATG	5 cut(s)	61, 318, 369, 458, 754
BtsIMutI	CAGTG	1 cut(s)	493
Cac8I	GCNNGC	2 cut(s)	299, 511
CciI	TCATGA	1 cut(s)	642
Cfr13I	GGNCC	1 cut(s)	464
ClaI	ATCGAT	2 cut(s)	6, 379
CviAII	CATG	6 cut(s)	244, 338, 547, 598, 643, 776
CviJI	RGCY	8 cut(s)	44, 257, 287, 402, 466, 509, 518, 575
CviKI_1	RGCY	8 cut(s)	44, 257, 287, 402, 466, 509, 518, 575
DdeI	CTNAG	2 cut(s)	514, 768
DpnI	GATC	7 cut(s)	5, 9, 107, 378, 382, 396, 765
DpnII	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
Eam1104I	CTCTTC	1 cut(s)	731
EarI	CTCTTC	1 cut(s)	731
Eco130I	CCWWGG	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	52
Eco81I	CCTNAGG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRI	GAATTC	2 cut(s)	14, 408
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	6 cut(s)	247, 341, 550, 601, 646, 779
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	1 cut(s)	671
FatI	CATG	6 cut(s)	243, 337, 546, 597, 642, 775
FbaI	TGATCA	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	45, 295, 627
FokI	GGATG	5 cut(s)	48, 305, 376, 465, 761
Fsp4HI	GCNGC	3 cut(s)	45, 295, 627
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	3 cut(s)	45, 295, 627
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	466, 575
HapII	CCGG	3 cut(s)	11, 519, 671
Hin1II	CATG	6 cut(s)	247, 341, 550, 601, 646, 779
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	3 cut(s)	11, 519, 671
Hpy166II	GTNNAC	3 cut(s)	280, 544, 555
Hpy188I	TCNGA	2 cut(s)	71, 254
Hpy188III	TCNNGA	7 cut(s)	11, 29, 184, 304, 503, 643, 671
Hpy8I	GTNNAC	3 cut(s)	280, 544, 555
HpyAV	CCTTC	3 cut(s)	76, 305, 586
HpyCH4III	ACNGT	2 cut(s)	535, 649
HpyCH4IV	ACGT	1 cut(s)	708
HpyCH4V	TGCA	2 cut(s)	124, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 515
HpyF3I	CTNAG	2 cut(s)	514, 768
HpySE526I	ACGT	1 cut(s)	708
Hsp92II	CATG	6 cut(s)	247, 341, 550, 601, 646, 779
Kpn2I	TCCGGA	2 cut(s)	10, 670
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
LmnI	GCTCC	3 cut(s)	175, 254, 721
Lsp1109I	GCAGC	2 cut(s)	31, 638
LweI	GCATC	3 cut(s)	70, 196, 327
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	529, 593
MalI	GATC	7 cut(s)	5, 9, 107, 378, 382, 396, 765
MboI	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
MboII	GAAGA	8 cut(s)	121, 613, 628, 643, 649, 707, 748, 770
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	6 cut(s)	14, 114, 137, 160, 267, 408
MroI	TCCGGA	2 cut(s)	10, 670
MseI	TTAA	4 cut(s)	81, 150, 198, 372
MslI	CAYNNNNRTG	1 cut(s)	323
MspCI	CTTAAG	2 cut(s)	80, 371
MspI	CCGG	3 cut(s)	11, 519, 671
MspR9I	CCNGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	41, 515
NciI	CCSGG	1 cut(s)	520
NdeII	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
NlaIII	CATG	6 cut(s)	247, 341, 550, 601, 646, 779
NlaIV	GGNNCC	3 cut(s)	256, 445, 465
NmuCI	GTSAC	2 cut(s)	529, 593
NspI	RCATGY	2 cut(s)	550, 779
PaeR7I	CTCGAG	1 cut(s)	29
PagI	TCATGA	1 cut(s)	642
PceI	AGGCCT	1 cut(s)	575
PciI	ACATGT	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	25
PflFI	GACNNNGTC	1 cut(s)	535
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	46, 296, 628
PscI	ACATGT	1 cut(s)	546
PspN4I	GGNNCC	3 cut(s)	256, 445, 465
PspPI	GGNCC	1 cut(s)	464
PsyI	GACNNNGTC	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	323
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	81, 150, 198, 372
SatI	GCNGC	3 cut(s)	45, 295, 627
Sau3AI	GATC	7 cut(s)	3, 7, 105, 376, 380, 394, 763
Sau96I	GGNCC	1 cut(s)	464
ScrFI	CCNGG	1 cut(s)	520
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	7 cut(s)	100, 191, 289, 316, 393, 685, 711
SfaNI	GCATC	3 cut(s)	70, 196, 327
Sfr274I	CTCGAG	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	4 cut(s)	20, 29, 80, 371
SmoI	CTYRAG	4 cut(s)	20, 29, 80, 371
Sse9I	AATT	6 cut(s)	14, 114, 137, 160, 267, 408
SseBI	AGGCCT	1 cut(s)	575
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	503
StuI	AGGCCT	1 cut(s)	575
StyD4I	CCNGG	1 cut(s)	518
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	535, 649
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	6 cut(s)	6, 30, 279, 379, 393, 693
TasI	AATT	6 cut(s)	14, 114, 137, 160, 267, 408
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	4 cut(s)	81, 150, 198, 372
Tru9I	TTAA	4 cut(s)	81, 150, 198, 372
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	529, 593
TseI	GCWGC	2 cut(s)	44, 626
Tsp45I	GTSAC	2 cut(s)	529, 593
TspDTI	ATGAA	2 cut(s)	380, 614
TspRI	CASTG	1 cut(s)	493
Tth111I	GACNNNGTC	1 cut(s)	535
Van91I	CCANNNNNTGG	1 cut(s)	190
Vha464I	CTTAAG	2 cut(s)	80, 371
XapI	RAATTY	2 cut(s)	14, 408
XbaI	TCTAGA	1 cut(s)	502
XceI	RCATGY	2 cut(s)	550, 779
XhoI	CTCGAG	1 cut(s)	29
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.