Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000377.1

Orthogroup ID

OG0000367

Physical Location & Seq

Genomic Coordinates Forward (+)

31985 .. 34107

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000377.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggcggggggatttggcgccgaaacgggtggcaaagaatttgaagcaaagatcacacctcttgtgatcatttcttgtataatggcagcgagcggaggcctaatgtttggttatgatgttggaatttcaggtaccgtagacactcctaacagtttgatcgaacgaggtaagttggaggaaggaaaatcaattcttagaagaatccgcggtgttgacaatgttgaaccagaatatttggagattgttgaggcaaatcgtacggcaacactaattaaaaaccctttccaaaatctcctaaagcgtaggaacaggcctactctagtcattggaatgatgatgcagatattccaacaatttacaggcattaatgcaatcatgttttacgctccagttttgttccagactttgggatttaagagtgatgcctccctttactcatccgtaataacaggacttgtcaatgttctctcaaccgttgtatcagttgtcgttgtggacaaagctggtcgtcgaatgctcttgatagaagctgggattcaaatgtttctttctcaaatgggagttgccgtaattatgggacttaaagttaaggattattctaacaacctcggacatagcttgggaattctagtgattattctcgtttgtagttttgtagcctctttcgcatggtcttggggtcctctagggtggttgatccctagtgagacattcgctgttgaagcacgctcggctggccagagtattgctgtttttacgaacatgctcttcacatttgttatagcacaagccttcctttcaatgctttgccacatgaagtctggcatattcgttttcttttcagcttgggtccttgtcatgacactttttaccatcttgtttattcctgagaccaagaatattcccattgatgagatgaatgagagagtgtggaagcaacattggtactggaagagatttatggatggctttgaagatggaccaaagggcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

331

Amino Acids

36.67

Weight (kDa)

8.37

Isoelectric Point (pI)

32.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26340
fragaria_vesca	FvH4_2g38270 FvH4_4g15150 FvH4_4g15160 FvH4_4g15170 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15180 FvH4_4g15220 FvH4_4g15221
malus_domestica	MD13G1189100.v1.1 MD13G1189500.v1.1 MD13G1189600.v1.1 MD13G1189800.v1.1 MD13G1190100.v1.1 MD13G1190200.v1.1 MD13G1190300.v1.1 MD16G1189900.v1.1 MD16G1190000.v1.1 MD16G1190100.v1.1 MD16G1190300.v1.1
prunus_persica	Prupe.1G156300_v2.0.a1 Prupe.1G156300_v2.0.a1 Prupe.1G156400_v2.0.a1 Prupe.1G156500_v2.0.a1 Prupe.1G156600_v2.0.a1 Prupe.1G156700_v2.0.a1 Prupe.1G156800_v2.0.a1 Prupe.1G156900_v2.0.a1 Prupe.1G157000_v2.0.a1
pyrus_communis	pycom13g16350 pycom13g16370 pycom13g16380 pycom16g15990 pycom16g16010 pycom16g16020
rosa_chinensis	RchiOBHm_Chr4g0413631 RchiOBHm_Chr4g0416271 RchiOBHm_Chr4g0416631 RchiOBHm_Chr4g0416651 RchiOBHm_Chr4g0416671 RchiOBHm_Chr4g0416681 RchiOBHm_Chr4g0416691 RchiOBHm_Chr4g0416721
rosa_laevigata	RLG00000007958 RLG00000007959 RLG00000007960 RLG00000007961 RLG00000007963 RLG00000007964 RLG00000008204
rosa_multiflora	Rmu_ssc0000377.1_g000001 Rmu_ssc0000377.1_g000007 Rmu_ssc0000377.1_g000017 Rmu_ssc0000377.1_g000025 Rmu_ssc0000377.1_g000041 Rmu_ssc0000377.1_g000043
rosa_roxburghii	Rroxscaffold_5G00357580 Rroxscaffold_5G00360530 Rroxscaffold_5G00360560 Rroxscaffold_5G00360580 Rroxscaffold_5G00360590
rosa_rugosa	Rorug04G0121900 Rorug04G0143800 Rorug04G0143900 Rorug04G0144000 Rorug04G0144000 Rorug04G0144100
rosa_samantha	Rh4AG181300 Rh4AG206000 Rh4AG206100 Rh4AG206200 Rh4AG206300 Rh4AG206500 Rh4AG206700 Rh4BG180600 Rh4BG203400 Rh4BG203500 Rh4BG203600 Rh4BG203700 Rh4BG203800 Rh4BG203900 Rh4BG204000 Rh4CG192500 Rh4CG216900 Rh4CG217200 Rh4CG217500 Rh4CG217700 Rh4CG217800 Rh4DG176700 Rh4DG202900 Rh4DG203000 Rh4DG203200 Rh4DG203300 Rh4DG203900
rosa_wichuraiana	Rw4G015160 Rw4G017430 Rw4G017440 Rw4G017450 Rw4G017460 Rw4G017480 Rw4G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	131
AccB1I	GGYRCC	2 cut(s)	17, 131
AccB7I	CCANNNNNTGG	1 cut(s)	406
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	1 cut(s)	207
AciI	CCGC	4 cut(s)	5, 93, 205, 207
AclWI	GGATC	1 cut(s)	691
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	3 cut(s)	38, 123, 624
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	3 cut(s)	133, 259, 947
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	6 cut(s)	44, 224, 539, 722, 801, 974
AluBI	AGCT	4 cut(s)	503, 530, 618, 845
AluI	AGCT	4 cut(s)	503, 530, 618, 845
Alw26I	GTCTC	2 cut(s)	701, 884
AlwI	GGATC	1 cut(s)	691
AoxI	GGCC	3 cut(s)	97, 311, 736
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	3 cut(s)	38, 123, 624
AseI	ATTAAT	1 cut(s)	366
Asp718I	GGTACC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	3 cut(s)	680, 850, 980
AvaII	GGWCC	3 cut(s)	680, 850, 980
BaeI	ACNNNNGTAYC	2 cut(s)	462, 495
BalI	TGGCCA	1 cut(s)	738
BanI	GGYRCC	2 cut(s)	17, 131
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	3 cut(s)	881, 959, 971
BceAI	ACGGC	2 cut(s)	276, 551
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	701, 884
BfaI	CTAG	4 cut(s)	320, 629, 686, 702
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme18I	GGWCC	3 cut(s)	680, 850, 980
BmgT120I	GGNCC	3 cut(s)	680, 850, 980
BmiI	GGNNCC	4 cut(s)	19, 133, 681, 851
BmsI	GCATC	2 cut(s)	327, 412
BpmI	CTGGAG	1 cut(s)	372
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	2 cut(s)	205, 607
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	389, 953
BseDI	CCNNGG	2 cut(s)	205, 607
BseGI	GGATG	2 cut(s)	437, 970
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	879
BseNI	ACTGG	2 cut(s)	389, 953
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	530
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	99, 313, 738
BshNI	GGYRCC	2 cut(s)	17, 131
BsiWI	CGTACG	1 cut(s)	257
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	2 cut(s)	701, 884
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	99, 313, 738
Bso31I	GGTCTC	1 cut(s)	884
Bsp143I	GATC	4 cut(s)	51, 66, 156, 696
BspACI	CCGC	4 cut(s)	5, 93, 205, 207
BspANI	GGCC	3 cut(s)	99, 313, 738
BspCNI	CTCAG	1 cut(s)	880
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	858
BspLI	GGNNCC	4 cut(s)	19, 133, 681, 851
BspPI	GGATC	1 cut(s)	691
BspQI	GCTCTTC	1 cut(s)	773
BspT107I	GGYRCC	2 cut(s)	17, 131
BspTNI	GGTCTC	1 cut(s)	884
BsrBI	CCGCTC	1 cut(s)	93
BsrI	ACTGG	2 cut(s)	389, 953
BssECI	CCNNGG	2 cut(s)	205, 607
BssMI	GATC	4 cut(s)	51, 66, 156, 696
BssNI	GRCGYC	1 cut(s)	18
Bst4CI	ACNGT	3 cut(s)	136, 152, 475
Bst6I	CTCTTC	2 cut(s)	773, 947
BstACI	GRCGYC	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	91, 727, 736
BstDEI	CTNAG	2 cut(s)	194, 888
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	437, 970
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	54, 69, 159, 699
BstMAI	GTCTC	2 cut(s)	701, 884
BstMBI	GATC	4 cut(s)	51, 66, 156, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	665, 722, 731, 735
BstNSI	RCATGY	1 cut(s)	766
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	98
BsuRI	GGCC	3 cut(s)	99, 313, 738
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	437, 970
Cac8I	GCNNGC	3 cut(s)	91, 727, 736
CciI	TCATGA	1 cut(s)	858
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	680, 850, 980
Cfr42I	CCGCGG	1 cut(s)	208
Csp6I	GTAC	3 cut(s)	132, 258, 946
CviAII	CATG	5 cut(s)	376, 669, 763, 814, 859
CviQI	GTAC	3 cut(s)	132, 258, 946
DdeI	CTNAG	2 cut(s)	194, 888
DinI	GGCGCC	1 cut(s)	19
DpnI	GATC	4 cut(s)	53, 68, 158, 698
DpnII	GATC	4 cut(s)	51, 66, 156, 696
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	2 cut(s)	773, 947
EarI	CTCTTC	2 cut(s)	773, 947
Eco147I	AGGCCT	2 cut(s)	99, 313
Eco31I	GGTCTC	1 cut(s)	884
Eco47I	GGWCC	3 cut(s)	680, 850, 980
EcoO109I	RGGNCCY	2 cut(s)	680, 850
EcoRI	GAATTC	1 cut(s)	624
EgeI	GGCGCC	1 cut(s)	19
EheI	GGCGCC	1 cut(s)	19
FaeI	CATG	5 cut(s)	379, 672, 766, 817, 862
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	375, 668, 762, 813, 858
FbaI	TGATCA	1 cut(s)	66
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	2 cut(s)	424, 977
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	4 cut(s)	320, 629, 686, 702
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	87
GsaI	CCCAGC	1 cut(s)	534
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	3 cut(s)	99, 313, 738
HhaI	GCGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	5 cut(s)	379, 672, 766, 817, 862
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	201, 535
Hpy166II	GTNNAC	3 cut(s)	139, 214, 496
Hpy188I	TCNGA	1 cut(s)	611
Hpy188III	TCNNGA	4 cut(s)	400, 520, 859, 887
Hpy8I	GTNNAC	3 cut(s)	139, 214, 496
Hpy99I	CGWCG	1 cut(s)	513
HpyAV	CCTTC	2 cut(s)	173, 802
HpyCH4III	ACNGT	3 cut(s)	136, 152, 475
HpyCH4V	TGCA	2 cut(s)	340, 371
HpyF10VI	GCNNNNNNNGC	4 cut(s)	665, 722, 731, 735
HpyF3I	CTNAG	2 cut(s)	194, 888
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	379, 672, 766, 817, 862
HspAI	GCGC	1 cut(s)	18
KasI	GGCGCC	1 cut(s)	17
KpnI	GGTACC	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	66
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	51, 66, 156, 696
LguI	GCTCTTC	1 cut(s)	773
LmnI	GCTCC	1 cut(s)	391
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	327, 412
MaeI	CTAG	4 cut(s)	320, 629, 686, 702
MalI	GATC	4 cut(s)	53, 68, 158, 698
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	4 cut(s)	51, 66, 156, 696
MboII	GAAGA	4 cut(s)	210, 760, 964, 986
MfeI	CAATTG	1 cut(s)	991
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	8 cut(s)	38, 123, 189, 270, 353, 570, 624, 991
MluNI	TGGCCA	1 cut(s)	738
Mly113I	GGCGCC	1 cut(s)	18
MmeI	TCCRAC	3 cut(s)	100, 153, 373
MnlI	CCTC	9 cut(s)	69, 89, 158, 169, 241, 436, 617, 670, 693
Mox20I	TGGCCA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	5 cut(s)	273, 366, 414, 582, 588
MslI	CAYNNNNRTG	1 cut(s)	329
Msp20I	TGGCCA	1 cut(s)	738
MspA1I	CMGCKG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	991
Mva1269I	GAATGC	1 cut(s)	519
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	4 cut(s)	665, 722, 731, 735
NarI	GGCGCC	1 cut(s)	18
NdeII	GATC	4 cut(s)	51, 66, 156, 696
NlaIII	CATG	5 cut(s)	379, 672, 766, 817, 862
NlaIV	GGNNCC	4 cut(s)	19, 133, 681, 851
NmeAIII	GCCGAG	1 cut(s)	710
NspI	RCATGY	1 cut(s)	766
PagI	TCATGA	1 cut(s)	858
PceI	AGGCCT	2 cut(s)	99, 313
PciSI	GCTCTTC	1 cut(s)	773
PctI	GAATGC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	201, 535
Pfl23II	CGTACG	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	406
PkrI	GCNGC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	21
PpuMI	RGGWCCY	2 cut(s)	680, 850
PshBI	ATTAAT	1 cut(s)	366
Psp5II	RGGWCCY	2 cut(s)	680, 850
PspFI	CCCAGC	1 cut(s)	530
PspLI	CGTACG	1 cut(s)	257
PspN4I	GGNNCC	4 cut(s)	19, 133, 681, 851
PspPI	GGNCC	3 cut(s)	680, 850, 980
PspPPI	RGGWCCY	2 cut(s)	680, 850
RsaI	GTAC	3 cut(s)	133, 259, 947
RsaNI	GTAC	3 cut(s)	132, 258, 946
RseI	CAYNNNNRTG	1 cut(s)	329
SacII	CCGCGG	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	773
SaqAI	TTAA	5 cut(s)	273, 366, 414, 582, 588
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	51, 66, 156, 696
Sau96I	GGNCC	3 cut(s)	680, 850, 980
SetI	ASST	8 cut(s)	61, 133, 169, 505, 532, 609, 620, 847
SfaNI	GCATC	2 cut(s)	327, 412
SfoI	GGCGCC	1 cut(s)	19
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	3 cut(s)	680, 850, 980
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	8 cut(s)	38, 123, 189, 270, 353, 570, 624, 991
SseBI	AGGCCT	2 cut(s)	99, 313
SsiI	CCGC	4 cut(s)	5, 93, 205, 207
SspDI	GGCGCC	1 cut(s)	17
SspI	AATATT	2 cut(s)	233, 901
SspMI	CTAG	4 cut(s)	320, 629, 686, 702
StuI	AGGCCT	2 cut(s)	99, 313
TaaI	ACNGT	3 cut(s)	136, 152, 475
TaqI	TCGA	2 cut(s)	159, 511
TasI	AATT	8 cut(s)	38, 123, 189, 270, 353, 570, 624, 991
TfiI	GAWTC	2 cut(s)	201, 535
Tru1I	TTAA	5 cut(s)	273, 366, 414, 582, 588
Tru9I	TTAA	5 cut(s)	273, 366, 414, 582, 588
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	830, 932
TspGWI	ACGGA	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	680, 850, 980
VspI	ATTAAT	1 cut(s)	366
XapI	RAATTY	3 cut(s)	38, 123, 624
XceI	RCATGY	1 cut(s)	766
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	4 cut(s)	320, 629, 686, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.