Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000367

Physical Location & Seq

Genomic Coordinates Reverse (-)

41160823 .. 41163588

Gene Structure 2766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38643

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGGAGCGGCAACGGGAGGCATAGAATTCGAAGCAAAGATCACTCCACTTGTGATCATTTCTTGCATAATGGCCGCTACCGGAGGCCTCATGTTTGGCTTCGATGTTGGTATTTCAGCTCTTAACCTTGCAATGCTTATTGTTGGGAGGCTTTTACTTGGTTGTGGAGTTGGTTTTGCTAACCAGGCAATTCCATTATTTCTCTCTGAGATTGCACCCACAAGAATTCGCGGGGCACTTAACATACTCTTCCAGCTCAATATCACCATTGGCATTCTTGTTGCAAACTTGATCAATTATGGAACAGCCAAAATATCATTGGGTTTGGCTGGCGTTCCAGCACTTCTGCCAACCGTGGGGTCTCTTATTGTGGTAGACACTCCTAACAGTTTGATCGCACGAGGTAAGTTGGAGGAAGGAAAAACAATTCTGAAAAGGATTCGTGGTGTTGATAATGTAGAACCAGAATACTTAGAAATTGTGAGGGCAAGTCGTGACGTCACAGAAATCTTCCAACAATTCACTGGCATCAATGCTATCATGTTTTACGCTCCAGATTTGTTCCAGACTTTGGGATTTAAGAGTGATGCTTCCCTATACTCATCTTCGTACGTCTTTGTGGACAAAGCTGGTCGCCGAATGCTCTTGATAGAAGCTGGGGTCCAAATGTTTCTTTCTCAAATGGGAGTTGCAATAGTGATGGGACTCAAAGTTAGAGATCATTCTAATGACCTCGGGCATGGCTTGGGAATTCTTGTGTTGGTTTTCGTGTGCAGTTTTGTGGCATCCTTCGGATGGTCTTGGGGACCTCTTGGGTGGTTGATCCCTAGTGAAACATTCGCTGTTGAGGCTCGCTCTGCTGGTCAGAGTGTGGGTACGGTGTGGAAGAAACACTGGTACTGGCAGAGATATATGGATTACTTACAGGATGGACCGGGCAAGGATCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

317

Amino Acids

34.24

Weight (kDa)

6.83

Isoelectric Point (pI)

30.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	42 - 297	9.9e-53	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26340
fragaria_vesca	FvH4_2g38270 FvH4_4g15150 FvH4_4g15160 FvH4_4g15170 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15180 FvH4_4g15220 FvH4_4g15221
malus_domestica	MD13G1189100.v1.1 MD13G1189500.v1.1 MD13G1189600.v1.1 MD13G1189800.v1.1 MD13G1190100.v1.1 MD13G1190200.v1.1 MD13G1190300.v1.1 MD16G1189900.v1.1 MD16G1190000.v1.1 MD16G1190100.v1.1 MD16G1190300.v1.1
prunus_persica	Prupe.1G156300_v2.0.a1 Prupe.1G156300_v2.0.a1 Prupe.1G156400_v2.0.a1 Prupe.1G156500_v2.0.a1 Prupe.1G156600_v2.0.a1 Prupe.1G156700_v2.0.a1 Prupe.1G156800_v2.0.a1 Prupe.1G156900_v2.0.a1 Prupe.1G157000_v2.0.a1
pyrus_communis	pycom13g16350 pycom13g16370 pycom13g16380 pycom16g15990 pycom16g16010 pycom16g16020
rosa_chinensis	RchiOBHm_Chr4g0413631 RchiOBHm_Chr4g0416271 RchiOBHm_Chr4g0416631 RchiOBHm_Chr4g0416651 RchiOBHm_Chr4g0416671 RchiOBHm_Chr4g0416681 RchiOBHm_Chr4g0416691 RchiOBHm_Chr4g0416721
rosa_laevigata	RLG00000007958 RLG00000007959 RLG00000007960 RLG00000007961 RLG00000007963 RLG00000007964 RLG00000008204
rosa_multiflora	Rmu_ssc0000377.1_g000001 Rmu_ssc0000377.1_g000007 Rmu_ssc0000377.1_g000017 Rmu_ssc0000377.1_g000025 Rmu_ssc0000377.1_g000041 Rmu_ssc0000377.1_g000043
rosa_roxburghii	Rroxscaffold_5G00357580 Rroxscaffold_5G00360530 Rroxscaffold_5G00360560 Rroxscaffold_5G00360580 Rroxscaffold_5G00360590
rosa_rugosa	Rorug04G0121900 Rorug04G0143800 Rorug04G0143900 Rorug04G0144000 Rorug04G0144000 Rorug04G0144100
rosa_samantha	Rh4AG181300 Rh4AG206000 Rh4AG206100 Rh4AG206200 Rh4AG206300 Rh4AG206500 Rh4AG206700 Rh4BG180600 Rh4BG203400 Rh4BG203500 Rh4BG203600 Rh4BG203700 Rh4BG203800 Rh4BG203900 Rh4BG204000 Rh4CG192500 Rh4CG216900 Rh4CG217200 Rh4CG217500 Rh4CG217700 Rh4CG217800 Rh4DG176700 Rh4DG202900 Rh4DG203000 Rh4DG203200 Rh4DG203300 Rh4DG203900
rosa_wichuraiana	Rw4G015160 Rw4G017430 Rw4G017440 Rw4G017450 Rw4G017460 Rw4G017480 Rw4G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	501
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	8
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	1 cut(s)	231
AciI	CCGC	3 cut(s)	8, 75, 231
AclWI	GGATC	2 cut(s)	817, 951
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	3 cut(s)	26, 225, 750
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	3 cut(s)	611, 877, 899
AfiI	CCNNNNNNNGG	3 cut(s)	356, 571, 795
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	119, 256, 629, 656
AluI	AGCT	4 cut(s)	119, 256, 629, 656
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	817, 951
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	2 cut(s)	72, 85
ApoI	RAATTY	3 cut(s)	26, 225, 750
AspS9I	GGNCC	3 cut(s)	661, 806, 932
AsuC2I	CCSGG	1 cut(s)	936
AsuHPI	GGTGA	1 cut(s)	256
AsuII	TTCGAA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	3 cut(s)	661, 806, 932
BaeGI	GKGCMC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	399
BccI	CCATC	3 cut(s)	694, 789, 923
BcgI	CGANNNNNNTGC	2 cut(s)	10, 44
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	2 cut(s)	54, 291
BcnI	CCSGG	1 cut(s)	936
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	828
BisI	GCNGC	2 cut(s)	9, 75
BlsI	GCNGC	2 cut(s)	10, 76
Bme1390I	CCNGG	2 cut(s)	185, 936
Bme18I	GGWCC	3 cut(s)	661, 806, 932
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	3 cut(s)	661, 806, 932
BmiI	GGNNCC	2 cut(s)	662, 807
BmrFI	CCNGG	2 cut(s)	185, 936
BmsI	GCATC	3 cut(s)	537, 577, 794
BplI	GAGNNNNNCTC	2 cut(s)	839, 871
BpmI	CTGGAG	1 cut(s)	537
Bpu14I	TTCGAA	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	354, 733
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 571, 795
Bse1I	ACTGG	3 cut(s)	529, 899, 905
Bse3DI	GCAATG	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	354, 733
BseGI	GGATG	3 cut(s)	785, 800, 934
BseLI	CCNNNNNNNGG	3 cut(s)	356, 571, 795
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	529, 899, 905
BseSI	GKGCMC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	656
BsgI	GTGCAG	1 cut(s)	793
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	74, 87
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	81, 935
BsiWI	CGTACG	1 cut(s)	609
BslFI	GGGAC	2 cut(s)	717, 819
BslI	CCNNNNNNNGG	3 cut(s)	356, 571, 795
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	717, 819
BsmI	GAATGC	2 cut(s)	273, 645
BsnI	GGCC	2 cut(s)	74, 87
Bso31I	GGTCTC	1 cut(s)	366
BsoBI	CYCGRG	1 cut(s)	734
Bsp119I	TTCGAA	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
BspACI	CCGC	3 cut(s)	8, 75, 231
BspANI	GGCC	2 cut(s)	74, 87
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	2 cut(s)	662, 807
BspPI	GGATC	2 cut(s)	817, 951
BspT104I	TTCGAA	1 cut(s)	30
BspTNI	GGTCTC	1 cut(s)	366
BsrBI	CCGCTC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	138
BsrI	ACTGG	3 cut(s)	529, 899, 905
BssECI	CCNNGG	2 cut(s)	354, 733
BssMI	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
BssNI	GRCGYC	1 cut(s)	498
BssSI	CACGAG	1 cut(s)	399
Bst2BI	CACGAG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	3 cut(s)	355, 389, 880
Bst6I	CTCTTC	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	498
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	331, 853
BstDEI	CTNAG	2 cut(s)	207, 472
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	785, 800, 934
BstFNI	CGCG	1 cut(s)	231
BstKTI	GATC	7 cut(s)	42, 57, 294, 396, 721, 825, 946
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 848, 857
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	183, 934
BstSLI	GKGCMC	1 cut(s)	238
BstUI	CGCG	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	74, 87
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	785, 800, 934
BtsIMutI	CAGTG	2 cut(s)	522, 892
Cac8I	GCNNGC	2 cut(s)	331, 853
Cfr13I	GGNCC	3 cut(s)	661, 806, 932
Csp6I	GTAC	3 cut(s)	610, 876, 898
CviAII	CATG	3 cut(s)	91, 541, 740
CviQI	GTAC	3 cut(s)	610, 876, 898
DdeI	CTNAG	2 cut(s)	207, 472
DpnI	GATC	7 cut(s)	41, 56, 293, 395, 720, 824, 945
DpnII	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco147I	AGGCCT	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	661, 806, 932
Eco88I	CYCGRG	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	806
EcoRI	GAATTC	3 cut(s)	26, 225, 750
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	94, 544, 743
FaqI	GGGAC	2 cut(s)	717, 819
FatI	CATG	3 cut(s)	90, 540, 739
FauI	CCCGC	1 cut(s)	224
FbaI	TGATCA	2 cut(s)	54, 291
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	9, 75
FokI	GGATG	3 cut(s)	772, 807, 941
Fsp4HI	GCNGC	2 cut(s)	9, 75
FspBI	CTAG	1 cut(s)	828
GluI	GCNGC	2 cut(s)	9, 75
GsaI	CCCAGC	1 cut(s)	660
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	74, 87
HapII	CCGG	2 cut(s)	81, 935
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	3 cut(s)	94, 544, 743
HinfI	GANTC	2 cut(s)	439, 705
HpaII	CCGG	2 cut(s)	81, 935
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	376, 622
Hpy188I	TCNGA	4 cut(s)	208, 432, 794, 867
Hpy188III	TCNNGA	4 cut(s)	494, 554, 565, 646
Hpy8I	GTNNAC	2 cut(s)	376, 622
HpyAV	CCTTC	2 cut(s)	410, 799
HpyCH4III	ACNGT	3 cut(s)	355, 389, 880
HpyCH4IV	ACGT	2 cut(s)	498, 612
HpyCH4V	TGCA	6 cut(s)	66, 131, 215, 284, 692, 774
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 848, 857
HpyF3I	CTNAG	2 cut(s)	207, 472
HpySE526I	ACGT	2 cut(s)	498, 612
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	94, 544, 743
Ksp22I	TGATCA	2 cut(s)	54, 291
Kzo9I	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
LmnI	GCTCC	2 cut(s)	5, 556
LweI	GCATC	3 cut(s)	537, 577, 794
MaeI	CTAG	1 cut(s)	828
MaeII	ACGT	2 cut(s)	498, 612
MaeIII	GTNAC	2 cut(s)	494, 499
MalI	GATC	7 cut(s)	41, 56, 293, 395, 720, 824, 945
MbiI	CCGCTC	1 cut(s)	8
MboI	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
MboII	GAAGA	4 cut(s)	241, 502, 597, 898
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	8 cut(s)	26, 189, 225, 295, 426, 477, 518, 750
MlyI	GAGTC	1 cut(s)	699
MmeI	TCCRAC	2 cut(s)	390, 538
MseI	TTAA	3 cut(s)	123, 240, 579
MslI	CAYNNNNRTG	1 cut(s)	726
MspI	CCGG	2 cut(s)	81, 935
MspR9I	CCNGG	2 cut(s)	185, 936
Mva1269I	GAATGC	2 cut(s)	273, 645
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	185, 848, 857
NciI	CCSGG	1 cut(s)	936
NdeII	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
NlaIII	CATG	3 cut(s)	94, 544, 743
NlaIV	GGNNCC	2 cut(s)	662, 807
NmuCI	GTSAC	2 cut(s)	494, 499
NspV	TTCGAA	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	87
PctI	GAATGC	2 cut(s)	273, 645
PfeI	GAWTC	1 cut(s)	439
Pfl23II	CGTACG	1 cut(s)	609
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	10, 76
PleI	GAGTC	1 cut(s)	699
PpsI	GAGTC	1 cut(s)	699
PpuMI	RGGWCCY	1 cut(s)	806
Psp5II	RGGWCCY	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	1 cut(s)	183
PspLI	CGTACG	1 cut(s)	609
PspN4I	GGNNCC	2 cut(s)	662, 807
PspPI	GGNCC	3 cut(s)	661, 806, 932
PspPPI	RGGWCCY	1 cut(s)	806
RsaI	GTAC	3 cut(s)	611, 877, 899
RsaNI	GTAC	3 cut(s)	610, 876, 898
RseI	CAYNNNNRTG	1 cut(s)	726
SaqAI	TTAA	3 cut(s)	123, 240, 579
SatI	GCNGC	2 cut(s)	9, 75
Sau3AI	GATC	7 cut(s)	39, 54, 291, 393, 718, 822, 943
Sau96I	GGNCC	3 cut(s)	661, 806, 932
SchI	GAGTC	1 cut(s)	699
ScrFI	CCNGG	2 cut(s)	185, 936
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	3 cut(s)	537, 577, 794
SfuI	TTCGAA	1 cut(s)	30
SinI	GGWCC	3 cut(s)	661, 806, 932
SmiMI	CAYNNNNRTG	1 cut(s)	726
Sse9I	AATT	8 cut(s)	26, 189, 225, 295, 426, 477, 518, 750
SseBI	AGGCCT	1 cut(s)	87
SsiI	CCGC	3 cut(s)	8, 75, 231
SspMI	CTAG	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	183, 934
TaaI	ACNGT	3 cut(s)	355, 389, 880
TaiI	ACGT	2 cut(s)	501, 615
TaqI	TCGA	2 cut(s)	30, 102
TasI	AATT	8 cut(s)	26, 189, 225, 295, 426, 477, 518, 750
TauI	GCSGC	2 cut(s)	11, 77
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	3 cut(s)	123, 240, 579
Tru9I	TTAA	3 cut(s)	123, 240, 579
TscAI	CASTG	2 cut(s)	529, 899
TseFI	GTSAC	2 cut(s)	494, 499
Tsp45I	GTSAC	2 cut(s)	494, 499
TspRI	CASTG	2 cut(s)	529, 899
Van91I	CCANNNNNTGG	1 cut(s)	571
VpaK11BI	GGWCC	3 cut(s)	661, 806, 932
XapI	RAATTY	3 cut(s)	26, 225, 750
XcmI	CCANNNNNNNNNTGG	2 cut(s)	316, 521
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	1 cut(s)	828
ZraI	GACGTC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.