Rorug04G0144000
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
24000658 .. 24002974
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0144000.1

Sequence Viewer

Length: 555 bp
ATGGTCTGGAGCCCCAAATCAAATTTTGATTCTGTTTTCTTTCTAGGTTTTCTAGGGATCACAGTGTTGCTATCAATTGAAGTGCGGGGATGGGCCATGTTACCGGGAAGTAATTTACAACACGAGGTTACTCTTCCTCTTTCCCATTTGAATTTGGCACCAATTCTCTTCCTCTTAGCCATGGGCGGGGCTTCCGTCATCAACAACGGCATTCACATTCCCCTGAAATTCGACTCAGCTAGGGTTTCATCACGATCCCCAGCCCCAAAATGGAGTAGGCCTCACTGTATTCACCATCTTGTTCTTCGCCACCGCACAGGTGGTGCCGTGGTTGACAGTCTGTCAATTGTGTGTTCTAGAGCAACTGAGCAGGACGATGATGTATCCACTTCAGTTTATATGAAAAGTCCTATTGGCTTTGGCGAGGGGATTCATCCTCAGTCATATGATGGCATTAGTAATGTGGACACTTCTCACAGTTCCACTCTGGATAAATCTAAGGGAGCCAAAGCTTTTGTTACTTCTAGCCAACTTGAATTTGTTGTTCTAATCTAA

Protein Analysis

184

Amino Acids

19.92

Weight (kDa)

7.13

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26340
fragaria_vesca FvH4_2g38270 FvH4_4g15150 FvH4_4g15160 FvH4_4g15170 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15180 FvH4_4g15220 FvH4_4g15221
malus_domestica MD13G1189100.v1.1 MD13G1189500.v1.1 MD13G1189600.v1.1 MD13G1189800.v1.1 MD13G1190100.v1.1 MD13G1190200.v1.1 MD13G1190300.v1.1 MD16G1189900.v1.1 MD16G1190000.v1.1 MD16G1190100.v1.1 MD16G1190300.v1.1
prunus_persica Prupe.1G156300_v2.0.a1 Prupe.1G156300_v2.0.a1 Prupe.1G156400_v2.0.a1 Prupe.1G156500_v2.0.a1 Prupe.1G156600_v2.0.a1 Prupe.1G156700_v2.0.a1 Prupe.1G156800_v2.0.a1 Prupe.1G156900_v2.0.a1 Prupe.1G157000_v2.0.a1
pyrus_communis pycom13g16350 pycom13g16370 pycom13g16380 pycom16g15990 pycom16g16010 pycom16g16020
rosa_chinensis RchiOBHm_Chr4g0413631 RchiOBHm_Chr4g0416271 RchiOBHm_Chr4g0416631 RchiOBHm_Chr4g0416651 RchiOBHm_Chr4g0416671 RchiOBHm_Chr4g0416681 RchiOBHm_Chr4g0416691 RchiOBHm_Chr4g0416721
rosa_laevigata RLG00000007958 RLG00000007959 RLG00000007960 RLG00000007961 RLG00000007963 RLG00000007964 RLG00000008204
rosa_multiflora Rmu_ssc0000377.1_g000001 Rmu_ssc0000377.1_g000007 Rmu_ssc0000377.1_g000017 Rmu_ssc0000377.1_g000025 Rmu_ssc0000377.1_g000041 Rmu_ssc0000377.1_g000043
rosa_roxburghii Rroxscaffold_5G00357580 Rroxscaffold_5G00360530 Rroxscaffold_5G00360560 Rroxscaffold_5G00360580 Rroxscaffold_5G00360590
rosa_rugosa Rorug04G0121900 Rorug04G0143800 Rorug04G0143900 Rorug04G0144000 Rorug04G0144000 Rorug04G0144100
rosa_samantha Rh4AG181300 Rh4AG206000 Rh4AG206100 Rh4AG206200 Rh4AG206300 Rh4AG206500 Rh4AG206700 Rh4BG180600 Rh4BG203400 Rh4BG203500 Rh4BG203600 Rh4BG203700 Rh4BG203800 Rh4BG203900 Rh4BG204000 Rh4CG192500 Rh4CG216900 Rh4CG217200 Rh4CG217500 Rh4CG217700 Rh4CG217800 Rh4DG176700 Rh4DG202900 Rh4DG203000 Rh4DG203200 Rh4DG203300 Rh4DG203900
rosa_wichuraiana Rw4G015160 Rw4G017430 Rw4G017440 Rw4G017450 Rw4G017460 Rw4G017480 Rw4G017490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 157, 323
AciI CCGC 3 cut(s) 85, 186, 313
AclWI GGATC 2 cut(s) 65, 249
AcsI RAATTY 4 cut(s) 22, 151, 227, 536
AcuI CTGAAG 1 cut(s) 375
AfiI CCNNNNNNNGG 2 cut(s) 186, 270
AgsI TTSAA 3 cut(s) 80, 151, 536
AhdI GACNNNNNGTC 1 cut(s) 340
AluBI AGCT 2 cut(s) 239, 512
AluI AGCT 2 cut(s) 239, 512
AlwI GGATC 2 cut(s) 65, 249
AoxI GGCC 2 cut(s) 93, 278
ApoI RAATTY 4 cut(s) 22, 151, 227, 536
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 284
BanI GGYRCC 2 cut(s) 157, 323
BanII GRGCYC 1 cut(s) 14
BauI CACGAG 1 cut(s) 122
BccI CCATC 3 cut(s) 84, 303, 443
BceAI ACGGC 2 cut(s) 223, 311
BciVI GTATCC 1 cut(s) 394
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 5 cut(s) 44, 53, 240, 357, 525
BfuI GTATCC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 105
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 4 cut(s) 11, 159, 325, 505
BmrFI CCNGG 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 265, 297
BpmI CTGGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 180, 327
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 270
BseDI CCNNGG 2 cut(s) 180, 327
BseGI GGATG 2 cut(s) 95, 433
BseLI CCNNNNNNNGG 2 cut(s) 186, 270
BseMII CTCAG 3 cut(s) 249, 357, 452
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 2 cut(s) 95, 280
BshNI GGYRCC 2 cut(s) 157, 323
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 186, 270
BsmI GAATGC 1 cut(s) 210
BsnI GGCC 2 cut(s) 95, 280
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 2 cut(s) 57, 254
Bsp19I CCATGG 1 cut(s) 180
BspACI CCGC 3 cut(s) 85, 186, 313
BspANI GGCC 2 cut(s) 95, 280
BspCNI CTCAG 3 cut(s) 248, 358, 451
BspLI GGNNCC 4 cut(s) 11, 159, 325, 505
BspPI GGATC 2 cut(s) 65, 249
BspT107I GGYRCC 2 cut(s) 157, 323
BssECI CCNNGG 2 cut(s) 180, 327
BssMI GATC 2 cut(s) 57, 254
BssSI CACGAG 1 cut(s) 122
BssT1I CCWWGG 1 cut(s) 180
Bst2BI CACGAG 1 cut(s) 122
Bst4CI ACNGT 4 cut(s) 64, 287, 338, 479
Bst6I CTCTTC 2 cut(s) 138, 173
BstDEI CTNAG 5 cut(s) 175, 235, 366, 438, 498
BstDSI CCRYGG 2 cut(s) 180, 327
BstF5I GGATG 2 cut(s) 95, 433
BstKTI GATC 2 cut(s) 60, 257
BstMBI GATC 2 cut(s) 57, 254
BstSCI CCNGG 1 cut(s) 103
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 95, 280
BtgI CCRYGG 2 cut(s) 180, 327
BtsCI GGATG 2 cut(s) 95, 433
BtsIMutI CAGTG 2 cut(s) 69, 283
Cfr13I GGNCC 1 cut(s) 93
CviAII CATG 2 cut(s) 97, 181
DdeI CTNAG 5 cut(s) 175, 235, 366, 438, 498
DpnI GATC 2 cut(s) 59, 256
DpnII GATC 2 cut(s) 57, 254
DriI GACNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 138, 173
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 2 cut(s) 138, 173
Eco130I CCWWGG 1 cut(s) 180
Eco147I AGGCCT 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 14
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 2 cut(s) 100, 184
FaiI YATR 6 cut(s) 98, 182, 399, 401, 445, 447
FatI CATG 2 cut(s) 96, 180
FauI CCCGC 2 cut(s) 78, 179
FauNDI CATATG 1 cut(s) 445
FokI GGATG 2 cut(s) 102, 420
FriOI GRGCYC 1 cut(s) 14
FspBI CTAG 5 cut(s) 44, 53, 240, 357, 525
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 28
HaeIII GGCC 2 cut(s) 95, 280
HapII CCGG 1 cut(s) 104
Hin1II CATG 2 cut(s) 100, 184
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 3 cut(s) 29, 233, 430
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 334, 466
Hpy188III TCNNGA 4 cut(s) 7, 252, 357, 488
Hpy8I GTNNAC 2 cut(s) 334, 466
HpyCH4III ACNGT 4 cut(s) 64, 287, 338, 479
HpyF3I CTNAG 5 cut(s) 175, 235, 366, 438, 498
Hsp92II CATG 2 cut(s) 100, 184
Kzo9I GATC 2 cut(s) 57, 254
LmnI GCTCC 2 cut(s) 9, 503
LpnPI CCDG 6 cut(s) 117, 236, 273, 303, 356, 473
MaeI CTAG 5 cut(s) 44, 53, 240, 357, 525
MaeIII GTNAC 3 cut(s) 99, 127, 517
MalI GATC 2 cut(s) 59, 256
MboI GATC 2 cut(s) 57, 254
MboII GAAGA 3 cut(s) 125, 160, 296
MfeI CAATTG 2 cut(s) 75, 345
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 8 cut(s) 22, 75, 112, 151, 162, 227, 345, 536
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 118, 147, 182, 291, 418, 447
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 2 cut(s) 75, 345
Mva1269I GAATGC 1 cut(s) 210
NciI CCSGG 1 cut(s) 105
NcoI CCATGG 1 cut(s) 180
NdeI CATATG 1 cut(s) 445
NdeII GATC 2 cut(s) 57, 254
NlaIII CATG 2 cut(s) 100, 184
NlaIV GGNNCC 4 cut(s) 11, 159, 325, 505
PceI AGGCCT 1 cut(s) 280
PctI GAATGC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 29, 430
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 11, 159, 325, 505
PspPI GGNCC 1 cut(s) 93
Sau3AI GATC 2 cut(s) 57, 254
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 49, 129, 241, 322, 514
Sse9I AATT 8 cut(s) 22, 75, 112, 151, 162, 227, 345, 536
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 3 cut(s) 85, 186, 313
SspMI CTAG 5 cut(s) 44, 53, 240, 357, 525
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 4 cut(s) 64, 287, 338, 479
TaqI TCGA 1 cut(s) 231
TasI AATT 8 cut(s) 22, 75, 112, 151, 162, 227, 345, 536
TfiI GAWTC 2 cut(s) 29, 430
TscAI CASTG 2 cut(s) 69, 290
TspDTI ATGAA 3 cut(s) 237, 416, 422
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 2 cut(s) 69, 290
XapI RAATTY 4 cut(s) 22, 151, 227, 536
XbaI TCTAGA 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 2 cut(s) 267, 317
XspI CTAG 5 cut(s) 44, 53, 240, 357, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.