Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000367

Physical Location & Seq

Genomic Coordinates Forward (+)

41070901 .. 41072513

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAACCTTGCCATGCTCATTATTGGGAGGCTCTTACTTGGTTGTGGAGTTGGTTTTGCTAACCAGGCAATTCCACTTTTCTTTCGGAAGTTGCACCCACAAGAATTCGTGGGGCACTTAACATACTCTTCCAGCTTAATATCACCATTGGCATTCTCGTTGCAAATCTTATCAACTATGGAACTGCCAACTGGGGTTCCAGCACTTCTACTAACGGTGGGGTCTCTTATTGTAGTAGACACTCCTAACAGTTTGATCGAACGAGGTAAGTTGGAGGAAGGAAAATCAATTCTTAGAAGAATCCGCGGTGTTGACAATGTTGAACCAGAATACTTGGAGATTGTTGAGGCAAATCGTACGGCAACACTAATTAAAAACCCTTTCCACAATCTCCTAAAGCGTAGGAACAGGCCTACTCTAGTCATTGGAATGATGATGCAGATATTCCAACAATTTACTGGCATTAATGCAATCATGTTTTACGCTCCAGTTTTGTTCCAGACTTTGGGATTTAAGAGTGATGCCTCCCTTTACTCATCCGTAATAACAGGACTTGTCAATGTTCTCTCAACCGTTGTATCAGTTGTCGTTGTGGACAAAGCTGGTCGTCGAATGCTCTTGATAGAAGCTGGGATTCAAATGTTTCTTTCTCAAATGGGAGTTGCCGTAATTATGGGACTTAAAGTTAAGGGTTATTCTAACAACCTCGGACATAGTTTGGGAATTCTAGTGATTATTCTCGTTTGTAGTTTTGTAGCCTCTTTCGCATGGTCTTGGGGTCCTCTAGGGTGGTTGATCCCTAGTGAGACATTCGCTGTTGAAGCTCGCTCGGCTGGCCAGAGTATTGCTGTTTTTACGAACATGCTCTTCACATTTATTATAGCACAAGCCTTCCTTTCAATGCTTTGCCACATGAAGTCTGGCATATTCGTTTTCTTTTCAGCTTGGGTCCTTGTCGTGACACTTTTTACCATCTTGTTTATTCCTGAGACCAAGAATACTCCCATTGATGAGATGAATGAAAGAGTGTGGAAGCAACATTGGTACTGGAAGAGATTTATGGATGGCTTTGAAGATGGACCAAAGGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

364

Amino Acids

40.49

Weight (kDa)

9.26

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 341	8.5e-72	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26340
fragaria_vesca	FvH4_2g38270 FvH4_4g15150 FvH4_4g15160 FvH4_4g15170 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15180 FvH4_4g15220 FvH4_4g15221
malus_domestica	MD13G1189100.v1.1 MD13G1189500.v1.1 MD13G1189600.v1.1 MD13G1189800.v1.1 MD13G1190100.v1.1 MD13G1190200.v1.1 MD13G1190300.v1.1 MD16G1189900.v1.1 MD16G1190000.v1.1 MD16G1190100.v1.1 MD16G1190300.v1.1
prunus_persica	Prupe.1G156300_v2.0.a1 Prupe.1G156300_v2.0.a1 Prupe.1G156400_v2.0.a1 Prupe.1G156500_v2.0.a1 Prupe.1G156600_v2.0.a1 Prupe.1G156700_v2.0.a1 Prupe.1G156800_v2.0.a1 Prupe.1G156900_v2.0.a1 Prupe.1G157000_v2.0.a1
pyrus_communis	pycom13g16350 pycom13g16370 pycom13g16380 pycom16g15990 pycom16g16010 pycom16g16020
rosa_chinensis	RchiOBHm_Chr4g0413631 RchiOBHm_Chr4g0416271 RchiOBHm_Chr4g0416631 RchiOBHm_Chr4g0416651 RchiOBHm_Chr4g0416671 RchiOBHm_Chr4g0416681 RchiOBHm_Chr4g0416691 RchiOBHm_Chr4g0416721
rosa_laevigata	RLG00000007958 RLG00000007959 RLG00000007960 RLG00000007961 RLG00000007963 RLG00000007964 RLG00000008204
rosa_multiflora	Rmu_ssc0000377.1_g000001 Rmu_ssc0000377.1_g000007 Rmu_ssc0000377.1_g000017 Rmu_ssc0000377.1_g000025 Rmu_ssc0000377.1_g000041 Rmu_ssc0000377.1_g000043
rosa_roxburghii	Rroxscaffold_5G00357580 Rroxscaffold_5G00360530 Rroxscaffold_5G00360560 Rroxscaffold_5G00360580 Rroxscaffold_5G00360590
rosa_rugosa	Rorug04G0121900 Rorug04G0143800 Rorug04G0143900 Rorug04G0144000 Rorug04G0144000 Rorug04G0144100
rosa_samantha	Rh4AG181300 Rh4AG206000 Rh4AG206100 Rh4AG206200 Rh4AG206300 Rh4AG206500 Rh4AG206700 Rh4BG180600 Rh4BG203400 Rh4BG203500 Rh4BG203600 Rh4BG203700 Rh4BG203800 Rh4BG203900 Rh4BG204000 Rh4CG192500 Rh4CG216900 Rh4CG217200 Rh4CG217500 Rh4CG217700 Rh4CG217800 Rh4DG176700 Rh4DG202900 Rh4DG203000 Rh4DG203200 Rh4DG203300 Rh4DG203900
rosa_wichuraiana	Rw4G015160 Rw4G017430 Rw4G017440 Rw4G017450 Rw4G017460 Rw4G017480 Rw4G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	306
AciI	CCGC	2 cut(s)	304, 306
AclWI	GGATC	1 cut(s)	790
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	2 cut(s)	104, 723
AfaI	GTAC	2 cut(s)	358, 1046
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	323, 638, 821, 900, 1073
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	5 cut(s)	135, 602, 629, 824, 944
AluI	AGCT	5 cut(s)	135, 602, 629, 824, 944
Alw26I	GTCTC	3 cut(s)	228, 800, 983
AlwI	GGATC	1 cut(s)	790
AoxI	GGCC	2 cut(s)	410, 835
ApoI	RAATTY	2 cut(s)	104, 723
AseI	ATTAAT	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	779, 949, 1079
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	3 cut(s)	779, 949, 1079
BaeGI	GKGCMC	1 cut(s)	117
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BalI	TGGCCA	1 cut(s)	837
BccI	CCATC	3 cut(s)	980, 1058, 1070
BceAI	ACGGC	2 cut(s)	375, 650
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	3 cut(s)	228, 800, 983
BfaI	CTAG	4 cut(s)	419, 728, 785, 801
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	3 cut(s)	779, 949, 1079
BmgT120I	GGNCC	3 cut(s)	779, 949, 1079
BmiI	GGNNCC	3 cut(s)	198, 780, 950
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	426, 511
BmuI	ACTGGG	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	471
BsaI	GGTCTC	2 cut(s)	228, 983
BsaJI	CCNNGG	2 cut(s)	304, 706
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse1I	ACTGG	4 cut(s)	196, 463, 488, 1052
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	304, 706
BseGI	GGATG	2 cut(s)	536, 1069
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseMII	CTCAG	1 cut(s)	978
BseNI	ACTGG	4 cut(s)	196, 463, 488, 1052
BseSI	GKGCMC	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	412, 837
BsiWI	CGTACG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	3 cut(s)	228, 800, 983
BsmFI	GGGAC	1 cut(s)	690
BsmI	GAATGC	2 cut(s)	152, 618
BsnI	GGCC	2 cut(s)	412, 837
Bso31I	GGTCTC	2 cut(s)	228, 983
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	255, 795
BspACI	CCGC	2 cut(s)	304, 306
BspANI	GGCC	2 cut(s)	412, 837
BspCNI	CTCAG	1 cut(s)	979
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	3 cut(s)	198, 780, 950
BspPI	GGATC	1 cut(s)	790
BspQI	GCTCTTC	1 cut(s)	872
BspTNI	GGTCTC	2 cut(s)	228, 983
BsrI	ACTGG	4 cut(s)	196, 463, 488, 1052
BssECI	CCNNGG	2 cut(s)	304, 706
BssMI	GATC	2 cut(s)	255, 795
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	217, 251, 574
Bst6I	CTCTTC	3 cut(s)	133, 872, 1046
BstC8I	GCNNGC	2 cut(s)	826, 835
BstDEI	CTNAG	2 cut(s)	293, 987
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	536, 1069
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	2 cut(s)	258, 798
BstMAI	GTCTC	3 cut(s)	228, 800, 983
BstMBI	GATC	2 cut(s)	255, 795
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 764, 821, 830, 834
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	865
BstSCI	CCNGG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	412, 837
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	536, 1069
Cac8I	GCNNGC	2 cut(s)	826, 835
Cfr13I	GGNCC	3 cut(s)	779, 949, 1079
Cfr42I	CCGCGG	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	357, 1045
CviAII	CATG	5 cut(s)	13, 475, 768, 862, 913
CviQI	GTAC	2 cut(s)	357, 1045
DdeI	CTNAG	2 cut(s)	293, 987
DpnI	GATC	2 cut(s)	257, 797
DpnII	GATC	2 cut(s)	255, 795
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	3 cut(s)	133, 872, 1046
EarI	CTCTTC	3 cut(s)	133, 872, 1046
Eco147I	AGGCCT	1 cut(s)	412
Eco31I	GGTCTC	2 cut(s)	228, 983
Eco47I	GGWCC	3 cut(s)	779, 949, 1079
EcoO109I	RGGNCCY	2 cut(s)	779, 949
EcoRI	GAATTC	2 cut(s)	104, 723
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	5 cut(s)	16, 478, 771, 865, 916
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	5 cut(s)	12, 474, 767, 861, 912
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	2 cut(s)	523, 1076
FspBI	CTAG	4 cut(s)	419, 728, 785, 801
GsaI	CCCAGC	1 cut(s)	633
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	412, 837
Hin1II	CATG	5 cut(s)	16, 478, 771, 865, 916
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	2 cut(s)	300, 634
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	3 cut(s)	238, 313, 595
Hpy188I	TCNGA	2 cut(s)	87, 710
Hpy188III	TCNNGA	4 cut(s)	499, 619, 958, 986
Hpy8I	GTNNAC	3 cut(s)	238, 313, 595
Hpy99I	CGWCG	1 cut(s)	612
HpyAV	CCTTC	2 cut(s)	272, 901
HpyCH4III	ACNGT	3 cut(s)	217, 251, 574
HpyCH4V	TGCA	4 cut(s)	94, 163, 439, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 764, 821, 830, 834
HpyF3I	CTNAG	2 cut(s)	293, 987
Hsp92II	CATG	5 cut(s)	16, 478, 771, 865, 916
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	255, 795
LguI	GCTCTTC	1 cut(s)	872
LmnI	GCTCC	1 cut(s)	490
LweI	GCATC	2 cut(s)	426, 511
MaeI	CTAG	4 cut(s)	419, 728, 785, 801
MaeIII	GTNAC	1 cut(s)	958
MalI	GATC	2 cut(s)	257, 797
MboI	GATC	2 cut(s)	255, 795
MboII	GAAGA	5 cut(s)	120, 309, 859, 1063, 1085
MfeI	CAATTG	1 cut(s)	1090
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	837
MluCI	AATT	8 cut(s)	69, 104, 288, 369, 452, 669, 723, 1090
MluNI	TGGCCA	1 cut(s)	837
MmeI	TCCRAC	2 cut(s)	252, 472
MnlI	CCTC	8 cut(s)	21, 257, 268, 340, 535, 716, 769, 792
Mox20I	TGGCCA	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	837
MseI	TTAA	7 cut(s)	119, 137, 372, 465, 513, 681, 687
MslI	CAYNNNNRTG	1 cut(s)	428
Msp20I	TGGCCA	1 cut(s)	837
MspA1I	CMGCKG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	1090
Mva1269I	GAATGC	2 cut(s)	152, 618
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	5 cut(s)	65, 764, 821, 830, 834
NdeII	GATC	2 cut(s)	255, 795
NlaIII	CATG	5 cut(s)	16, 478, 771, 865, 916
NlaIV	GGNNCC	3 cut(s)	198, 780, 950
NmeAIII	GCCGAG	1 cut(s)	809
NmuCI	GTSAC	1 cut(s)	958
NspI	RCATGY	1 cut(s)	865
PceI	AGGCCT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	872
PctI	GAATGC	2 cut(s)	152, 618
PfeI	GAWTC	2 cut(s)	300, 634
Pfl23II	CGTACG	1 cut(s)	356
PflMI	CCANNNNNTGG	1 cut(s)	505
PpuMI	RGGWCCY	2 cut(s)	779, 949
PshBI	ATTAAT	1 cut(s)	465
Psp5II	RGGWCCY	2 cut(s)	779, 949
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	629
PspGI	CCWGG	1 cut(s)	63
PspLI	CGTACG	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	198, 780, 950
PspPI	GGNCC	3 cut(s)	779, 949, 1079
PspPPI	RGGWCCY	2 cut(s)	779, 949
RsaI	GTAC	2 cut(s)	358, 1046
RsaNI	GTAC	2 cut(s)	357, 1045
RseI	CAYNNNNRTG	1 cut(s)	428
SacII	CCGCGG	1 cut(s)	307
SapI	GCTCTTC	1 cut(s)	872
SaqAI	TTAA	7 cut(s)	119, 137, 372, 465, 513, 681, 687
Sau3AI	GATC	2 cut(s)	255, 795
Sau96I	GGNCC	3 cut(s)	779, 949, 1079
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	8 cut(s)	9, 137, 268, 604, 631, 708, 826, 946
SfaNI	GCATC	2 cut(s)	426, 511
Sfr303I	CCGCGG	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	307
SinI	GGWCC	3 cut(s)	779, 949, 1079
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	8 cut(s)	69, 104, 288, 369, 452, 669, 723, 1090
SseBI	AGGCCT	1 cut(s)	412
SsiI	CCGC	2 cut(s)	304, 306
SspMI	CTAG	4 cut(s)	419, 728, 785, 801
StuI	AGGCCT	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	217, 251, 574
TaqI	TCGA	2 cut(s)	258, 610
TasI	AATT	8 cut(s)	69, 104, 288, 369, 452, 669, 723, 1090
TfiI	GAWTC	2 cut(s)	300, 634
Tru1I	TTAA	7 cut(s)	119, 137, 372, 465, 513, 681, 687
Tru9I	TTAA	7 cut(s)	119, 137, 372, 465, 513, 681, 687
TseFI	GTSAC	1 cut(s)	958
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	4 cut(s)	17, 929, 1031, 1035
TspGWI	ACGGA	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	3 cut(s)	779, 949, 1079
VspI	ATTAAT	1 cut(s)	465
XapI	RAATTY	2 cut(s)	104, 723
XceI	RCATGY	1 cut(s)	865
XcmI	CCANNNNNNNNNTGG	2 cut(s)	455, 917
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	4 cut(s)	419, 728, 785, 801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.