Rh4CG217200
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
44898077 .. 44899830
1754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG217200.1

Sequence Viewer

Length: 1278 bp
ATGTTCACATCTTCATTGTACCTCGCCGCTTTAATAGCAACATTCTTTGCATCGTACACAACCAAAACACTAGGTCGAAAGGTGACCATGTTGATAGCTGGGATTTTGTTTTTAATTGGAACAGCTTTTAATGCCGCAGCAATGAACCTTGCCATGCTCATTATTGGGAGGCTCTTACTTGGTTGTGGAGTTGGTTTTGCTAACCAGGCAATTCCACTTTTTCTTTCGGAAGTTGCACCCACAAGAATTCGTGGGGCACTTAACATACTCTTCCAGCTTAATATCACCATTGGCATTCTCGTTGCAAATCTTATCAACTATGGAACTGCCAAACTTACAACGGGATATGGTTGGAGAATATCACTGGGTTTAGCTGCGGTTCCGGCACTTCTACTAACGGTGGGGTCTCTTATTGTAGTAGACACTCCTAACAGTTTGATCGAACGAGGTAAGTTGGAGGAAGGAAAATCAATTCTTAGAAGAATCCGCGGTGTTGACAATGTTGAACCAGAATACTTGGAGATTGTTGAGGCAAATCGTACGGCAACACTAATTAAAAACCCTTTCCAAAATCTCCTAAAGCGTAGGAACAGGCCTACTCTAGTCATTGGAATGATGATGCAGATATTCCAACAATTTACAGGCATTAATGCAATCATGTTTTACGCTCCAGTTTTGTTCCAGACTTTGGGATTTAAGAGTGATGCCTCCCTTTACTCATCCGTAATAACAGGACTTGTCAATGTTCTCTCAACTGTTGTATCAGTTGTCGTTGTGGACAAAGCTGGTCGTCGAATGCTCTTGATAGAAGCTGGGATTCAAATGTTTCTTTCTCAAATGGGAGTTGCCGTAATTATGGGACTTAAAGTTAAGGATTATTCTAACAACCTCGGACATAGCTTGGGAATTCTAGTGATTATTCTCGTTTGTAGTTTTGTAGCCTCTTTCGCATGGTCTTGGGGTCCTCTAGGGTGGTTGATCCCTAGTGAGACATTCGCTGTTGAAGCTCGCTCGGCTGGCCAGAGTATTGCTGTTTTTACGAACATGCTCTTCACATTTGTTATAGCACAAGCCTTCCTTTCAATGCTTTGCCACATGAAGTCTGGCATATTCGTTTTCTTTTCAGCTTGGGTCCTTGTCATGACACTTTTTACCATCTTGTTTATTCCTGAGACCAAGAATATTCCCGTTGATGAGATGAATGAAAGAGTGTGGAAGCAACATTGGTACTGGAAGAGATTTATGGATGGCTTTGAAGATGGACCAAAGGGCAATTGA

Protein Analysis

425

Amino Acids

46.83

Weight (kDa)

9.63

Isoelectric Point (pI)

29.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 402 2e-108 Sugar (and other) transporter
MFS_1 PF07690 3 - 353 1.4e-23 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000367)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26340
fragaria_vesca FvH4_2g38270 FvH4_4g15150 FvH4_4g15160 FvH4_4g15170 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15180 FvH4_4g15220 FvH4_4g15221
malus_domestica MD13G1189100.v1.1 MD13G1189500.v1.1 MD13G1189600.v1.1 MD13G1189800.v1.1 MD13G1190100.v1.1 MD13G1190200.v1.1 MD13G1190300.v1.1 MD16G1189900.v1.1 MD16G1190000.v1.1 MD16G1190100.v1.1 MD16G1190300.v1.1
prunus_persica Prupe.1G156300_v2.0.a1 Prupe.1G156300_v2.0.a1 Prupe.1G156400_v2.0.a1 Prupe.1G156500_v2.0.a1 Prupe.1G156600_v2.0.a1 Prupe.1G156700_v2.0.a1 Prupe.1G156800_v2.0.a1 Prupe.1G156900_v2.0.a1 Prupe.1G157000_v2.0.a1
pyrus_communis pycom13g16350 pycom13g16370 pycom13g16380 pycom16g15990 pycom16g16010 pycom16g16020
rosa_chinensis RchiOBHm_Chr4g0413631 RchiOBHm_Chr4g0416271 RchiOBHm_Chr4g0416631 RchiOBHm_Chr4g0416651 RchiOBHm_Chr4g0416671 RchiOBHm_Chr4g0416681 RchiOBHm_Chr4g0416691 RchiOBHm_Chr4g0416721
rosa_laevigata RLG00000007958 RLG00000007959 RLG00000007960 RLG00000007961 RLG00000007963 RLG00000007964 RLG00000008204
rosa_multiflora Rmu_ssc0000377.1_g000001 Rmu_ssc0000377.1_g000007 Rmu_ssc0000377.1_g000017 Rmu_ssc0000377.1_g000025 Rmu_ssc0000377.1_g000041 Rmu_ssc0000377.1_g000043
rosa_roxburghii Rroxscaffold_5G00357580 Rroxscaffold_5G00360530 Rroxscaffold_5G00360560 Rroxscaffold_5G00360580 Rroxscaffold_5G00360590
rosa_rugosa Rorug04G0121900 Rorug04G0143800 Rorug04G0143900 Rorug04G0144000 Rorug04G0144000 Rorug04G0144100
rosa_samantha Rh4AG181300 Rh4AG206000 Rh4AG206100 Rh4AG206200 Rh4AG206300 Rh4AG206500 Rh4AG206700 Rh4BG180600 Rh4BG203400 Rh4BG203500 Rh4BG203600 Rh4BG203700 Rh4BG203800 Rh4BG203900 Rh4BG204000 Rh4CG192500 Rh4CG216900 Rh4CG217200 Rh4CG217500 Rh4CG217700 Rh4CG217800 Rh4DG176700 Rh4DG202900 Rh4DG203000 Rh4DG203200 Rh4DG203300 Rh4DG203900
rosa_wichuraiana Rw4G015160 Rw4G017430 Rw4G017440 Rw4G017450 Rw4G017460 Rw4G017480 Rw4G017490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 688
AccI GTMKAC 1 cut(s) 420
AccII CGCG 1 cut(s) 489
AciI CCGC 5 cut(s) 27, 135, 377, 487, 489
AclWI GGATC 1 cut(s) 973
AcoI YGGCCR 1 cut(s) 1018
AcsI RAATTY 2 cut(s) 246, 906
AfaI GTAC 4 cut(s) 20, 56, 541, 1229
AfiI CCNNNNNNNGG 1 cut(s) 688
AgsI TTSAA 5 cut(s) 506, 821, 1004, 1083, 1256
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 9 cut(s) 98, 125, 277, 374, 785, 812, 900, 1007, 1127
AluI AGCT 9 cut(s) 98, 125, 277, 374, 785, 812, 900, 1007, 1127
Alw26I GTCTC 3 cut(s) 411, 983, 1166
AlwI GGATC 1 cut(s) 973
AoxI GGCC 2 cut(s) 593, 1018
ApeKI GCWGC 2 cut(s) 137, 374
ApoI RAATTY 2 cut(s) 246, 906
AseI ATTAAT 1 cut(s) 648
AspS9I GGNCC 3 cut(s) 962, 1132, 1262
AsuHPI GGTGA 2 cut(s) 94, 277
AvaII GGWCC 3 cut(s) 962, 1132, 1262
BaeGI GKGCMC 1 cut(s) 259
BaeI ACNNNNGTAYC 2 cut(s) 744, 777
BalI TGGCCA 1 cut(s) 1020
BbvI GCAGC 2 cut(s) 149, 361
BccI CCATC 3 cut(s) 1163, 1241, 1253
BceAI ACGGC 2 cut(s) 558, 833
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 3 cut(s) 411, 983, 1166
BfaI CTAG 5 cut(s) 71, 602, 911, 968, 984
BisI GCNGC 4 cut(s) 27, 135, 138, 375
BlsI GCNGC 4 cut(s) 28, 136, 139, 376
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 3 cut(s) 962, 1132, 1262
BmgT120I GGNCC 3 cut(s) 962, 1132, 1262
BmiI GGNNCC 3 cut(s) 381, 963, 1133
BmrFI CCNGG 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 374
BmsI GCATC 3 cut(s) 59, 609, 694
BmuI ACTGGG 1 cut(s) 374
BpmI CTGGAG 1 cut(s) 654
BsaI GGTCTC 2 cut(s) 411, 1166
BsaJI CCNNGG 2 cut(s) 487, 889
BsaXI ACNNNNNCTCC 2 cut(s) 834, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 688
Bse1I ACTGG 3 cut(s) 369, 671, 1235
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 487, 889
BseGI GGATG 2 cut(s) 719, 1252
BseLI CCNNNNNNNGG 1 cut(s) 688
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 1161
BseNI ACTGG 3 cut(s) 369, 671, 1235
BseSI GKGCMC 1 cut(s) 259
BseXI GCAGC 2 cut(s) 149, 361
BseYI CCCAGC 2 cut(s) 98, 812
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 2 cut(s) 595, 1020
BsiSI CCGG 1 cut(s) 383
BsiWI CGTACG 1 cut(s) 539
BslFI GGGAC 1 cut(s) 873
BslI CCNNNNNNNGG 1 cut(s) 688
BsmAI GTCTC 3 cut(s) 411, 983, 1166
BsmFI GGGAC 1 cut(s) 873
BsmI GAATGC 2 cut(s) 294, 801
BsnI GGCC 2 cut(s) 595, 1020
Bso31I GGTCTC 2 cut(s) 411, 1166
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 438, 978
BspACI CCGC 5 cut(s) 27, 135, 377, 487, 489
BspANI GGCC 2 cut(s) 595, 1020
BspCNI CTCAG 1 cut(s) 1162
BspFNI CGCG 1 cut(s) 489
BspHI TCATGA 1 cut(s) 1140
BspLI GGNNCC 3 cut(s) 381, 963, 1133
BspPI GGATC 1 cut(s) 973
BspQI GCTCTTC 1 cut(s) 1055
BspTNI GGTCTC 2 cut(s) 411, 1166
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 3 cut(s) 369, 671, 1235
BssECI CCNNGG 2 cut(s) 487, 889
BssMI GATC 2 cut(s) 438, 978
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 3 cut(s) 400, 434, 757
Bst6I CTCTTC 3 cut(s) 275, 1055, 1229
BstC8I GCNNGC 2 cut(s) 1009, 1018
BstDEI CTNAG 2 cut(s) 476, 1170
BstDSI CCRYGG 1 cut(s) 487
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 719, 1252
BstFNI CGCG 1 cut(s) 489
BstKTI GATC 2 cut(s) 441, 981
BstMAI GTCTC 3 cut(s) 411, 983, 1166
BstMBI GATC 2 cut(s) 438, 978
BstMWI GCNNNNNNNGC 8 cut(s) 35, 131, 206, 383, 947, 1004, 1013, 1017
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 1048
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 149, 361
BsuRI GGCC 2 cut(s) 595, 1020
BtgI CCRYGG 1 cut(s) 487
BtsCI GGATG 2 cut(s) 719, 1252
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 2 cut(s) 1009, 1018
CciI TCATGA 1 cut(s) 1140
Cfr13I GGNCC 3 cut(s) 962, 1132, 1262
Cfr42I CCGCGG 1 cut(s) 490
Csp6I GTAC 4 cut(s) 19, 55, 540, 1228
CviAII CATG 7 cut(s) 88, 154, 658, 951, 1045, 1096, 1141
CviQI GTAC 4 cut(s) 19, 55, 540, 1228
DdeI CTNAG 2 cut(s) 476, 1170
DpnI GATC 2 cut(s) 440, 980
DpnII GATC 2 cut(s) 438, 978
EaeI YGGCCR 1 cut(s) 1018
Eam1104I CTCTTC 3 cut(s) 275, 1055, 1229
EarI CTCTTC 3 cut(s) 275, 1055, 1229
Eco147I AGGCCT 1 cut(s) 595
Eco31I GGTCTC 2 cut(s) 411, 1166
Eco47I GGWCC 3 cut(s) 962, 1132, 1262
Eco91I GGTNACC 1 cut(s) 82
EcoO109I RGGNCCY 2 cut(s) 962, 1132
EcoO65I GGTNACC 1 cut(s) 82
EcoRI GAATTC 2 cut(s) 246, 906
EcoRII CCWGG 1 cut(s) 204
FaeI CATG 7 cut(s) 91, 157, 661, 954, 1048, 1099, 1144
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FaqI GGGAC 1 cut(s) 873
FatI CATG 7 cut(s) 87, 153, 657, 950, 1044, 1095, 1140
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 27, 135, 138, 375
FokI GGATG 2 cut(s) 706, 1259
Fsp4HI GCNGC 4 cut(s) 27, 135, 138, 375
FspBI CTAG 5 cut(s) 71, 602, 911, 968, 984
GluI GCNGC 4 cut(s) 27, 135, 138, 375
GsaI CCCAGC 2 cut(s) 102, 816
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 2 cut(s) 595, 1020
HapII CCGG 1 cut(s) 383
Hin1II CATG 7 cut(s) 91, 157, 661, 954, 1048, 1099, 1144
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 2 cut(s) 483, 817
HpaII CCGG 1 cut(s) 383
HphI GGTGA 2 cut(s) 94, 277
Hpy166II GTNNAC 5 cut(s) 6, 57, 421, 496, 778
Hpy188I TCNGA 2 cut(s) 229, 893
Hpy188III TCNNGA 4 cut(s) 682, 802, 1141, 1169
Hpy8I GTNNAC 5 cut(s) 6, 57, 421, 496, 778
Hpy99I CGWCG 1 cut(s) 795
HpyAV CCTTC 2 cut(s) 455, 1084
HpyCH4III ACNGT 3 cut(s) 400, 434, 757
HpyCH4V TGCA 5 cut(s) 50, 236, 305, 622, 653
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 131, 206, 383, 947, 1004, 1013, 1017
HpyF3I CTNAG 2 cut(s) 476, 1170
Hsp92II CATG 7 cut(s) 91, 157, 661, 954, 1048, 1099, 1144
KspI CCGCGG 1 cut(s) 490
Kzo9I GATC 2 cut(s) 438, 978
LguI GCTCTTC 1 cut(s) 1055
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 2 cut(s) 149, 361
LweI GCATC 3 cut(s) 59, 609, 694
MaeI CTAG 5 cut(s) 71, 602, 911, 968, 984
MaeIII GTNAC 1 cut(s) 82
MalI GATC 2 cut(s) 440, 980
MboI GATC 2 cut(s) 438, 978
MboII GAAGA 6 cut(s) 3, 262, 492, 1042, 1246, 1268
MfeI CAATTG 1 cut(s) 1273
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 1020
MluCI AATT 9 cut(s) 114, 210, 246, 471, 552, 635, 852, 906, 1273
MluNI TGGCCA 1 cut(s) 1020
MmeI TCCRAC 3 cut(s) 332, 435, 655
MnlI CCTC 9 cut(s) 32, 162, 440, 451, 523, 718, 899, 952, 975
Mox20I TGGCCA 1 cut(s) 1020
MscI TGGCCA 1 cut(s) 1020
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 1020
MspA1I CMGCKG 1 cut(s) 489
MspI CCGG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 1273
Mva1269I GAATGC 2 cut(s) 294, 801
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 8 cut(s) 35, 131, 206, 383, 947, 1004, 1013, 1017
NdeII GATC 2 cut(s) 438, 978
NlaIII CATG 7 cut(s) 91, 157, 661, 954, 1048, 1099, 1144
NlaIV GGNNCC 3 cut(s) 381, 963, 1133
NmeAIII GCCGAG 1 cut(s) 992
NmuCI GTSAC 1 cut(s) 82
NspI RCATGY 1 cut(s) 1048
PagI TCATGA 1 cut(s) 1140
PceI AGGCCT 1 cut(s) 595
PciSI GCTCTTC 1 cut(s) 1055
PctI GAATGC 2 cut(s) 294, 801
PfeI GAWTC 2 cut(s) 483, 817
Pfl23II CGTACG 1 cut(s) 539
PflMI CCANNNNNTGG 1 cut(s) 688
PkrI GCNGC 4 cut(s) 28, 136, 139, 376
PpuMI RGGWCCY 2 cut(s) 962, 1132
PshBI ATTAAT 1 cut(s) 648
Psp5II RGGWCCY 2 cut(s) 962, 1132
Psp6I CCWGG 1 cut(s) 204
PspEI GGTNACC 1 cut(s) 82
PspFI CCCAGC 2 cut(s) 98, 812
PspGI CCWGG 1 cut(s) 204
PspLI CGTACG 1 cut(s) 539
PspN4I GGNNCC 3 cut(s) 381, 963, 1133
PspPI GGNCC 3 cut(s) 962, 1132, 1262
PspPPI RGGWCCY 2 cut(s) 962, 1132
RsaI GTAC 4 cut(s) 20, 56, 541, 1229
RsaNI GTAC 4 cut(s) 19, 55, 540, 1228
RseI CAYNNNNRTG 1 cut(s) 611
SacII CCGCGG 1 cut(s) 490
SapI GCTCTTC 1 cut(s) 1055
SatI GCNGC 4 cut(s) 27, 135, 138, 375
Sau3AI GATC 2 cut(s) 438, 978
Sau96I GGNCC 3 cut(s) 962, 1132, 1262
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 3 cut(s) 59, 609, 694
Sfr303I CCGCGG 1 cut(s) 490
SgrBI CCGCGG 1 cut(s) 490
SinI GGWCC 3 cut(s) 962, 1132, 1262
SmiMI CAYNNNNRTG 1 cut(s) 611
Sse9I AATT 9 cut(s) 114, 210, 246, 471, 552, 635, 852, 906, 1273
SseBI AGGCCT 1 cut(s) 595
SsiI CCGC 5 cut(s) 27, 135, 377, 487, 489
SspI AATATT 1 cut(s) 1183
SspMI CTAG 5 cut(s) 71, 602, 911, 968, 984
StuI AGGCCT 1 cut(s) 595
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 400, 434, 757
TaqI TCGA 3 cut(s) 76, 441, 793
TasI AATT 9 cut(s) 114, 210, 246, 471, 552, 635, 852, 906, 1273
TauI GCSGC 2 cut(s) 29, 137
TfiI GAWTC 2 cut(s) 483, 817
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 137, 374
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 4 cut(s) 158, 1112, 1214, 1218
TspGWI ACGGA 1 cut(s) 712
TspRI CASTG 1 cut(s) 369
Van91I CCANNNNNTGG 1 cut(s) 688
VpaK11BI GGWCC 3 cut(s) 962, 1132, 1262
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 2 cut(s) 246, 906
XceI RCATGY 1 cut(s) 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 1100
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 5 cut(s) 71, 602, 911, 968, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.