Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000367

Physical Location & Seq

Genomic Coordinates Forward (+)

23939357 .. 23940141

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATTCTCAAGGATCTTTACTATGACAAGGGAGTTAAGCGCCCAACTACAGAGCATATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCATGGTGAGGACATCTTGGGCATCATGAAGACTACTTCCGAGAGAGGTAGCGGTTATGGCGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCCTACAGAGATGCAAACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

191

Amino Acids

21.17

Weight (kDa)

5.84

Isoelectric Point (pI)

57.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	7.3e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000367)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26340
fragaria_vesca	FvH4_2g38270 FvH4_4g15150 FvH4_4g15160 FvH4_4g15170 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15172 FvH4_4g15180 FvH4_4g15220 FvH4_4g15221
malus_domestica	MD13G1189100.v1.1 MD13G1189500.v1.1 MD13G1189600.v1.1 MD13G1189800.v1.1 MD13G1190100.v1.1 MD13G1190200.v1.1 MD13G1190300.v1.1 MD16G1189900.v1.1 MD16G1190000.v1.1 MD16G1190100.v1.1 MD16G1190300.v1.1
prunus_persica	Prupe.1G156300_v2.0.a1 Prupe.1G156300_v2.0.a1 Prupe.1G156400_v2.0.a1 Prupe.1G156500_v2.0.a1 Prupe.1G156600_v2.0.a1 Prupe.1G156700_v2.0.a1 Prupe.1G156800_v2.0.a1 Prupe.1G156900_v2.0.a1 Prupe.1G157000_v2.0.a1
pyrus_communis	pycom13g16350 pycom13g16370 pycom13g16380 pycom16g15990 pycom16g16010 pycom16g16020
rosa_chinensis	RchiOBHm_Chr4g0413631 RchiOBHm_Chr4g0416271 RchiOBHm_Chr4g0416631 RchiOBHm_Chr4g0416651 RchiOBHm_Chr4g0416671 RchiOBHm_Chr4g0416681 RchiOBHm_Chr4g0416691 RchiOBHm_Chr4g0416721
rosa_laevigata	RLG00000007958 RLG00000007959 RLG00000007960 RLG00000007961 RLG00000007963 RLG00000007964 RLG00000008204
rosa_multiflora	Rmu_ssc0000377.1_g000001 Rmu_ssc0000377.1_g000007 Rmu_ssc0000377.1_g000017 Rmu_ssc0000377.1_g000025 Rmu_ssc0000377.1_g000041 Rmu_ssc0000377.1_g000043
rosa_roxburghii	Rroxscaffold_5G00357580 Rroxscaffold_5G00360530 Rroxscaffold_5G00360560 Rroxscaffold_5G00360580 Rroxscaffold_5G00360590
rosa_rugosa	Rorug04G0121900 Rorug04G0143800 Rorug04G0143900 Rorug04G0144000 Rorug04G0144000 Rorug04G0144100
rosa_samantha	Rh4AG181300 Rh4AG206000 Rh4AG206100 Rh4AG206200 Rh4AG206300 Rh4AG206500 Rh4AG206700 Rh4BG180600 Rh4BG203400 Rh4BG203500 Rh4BG203600 Rh4BG203700 Rh4BG203800 Rh4BG203900 Rh4BG204000 Rh4CG192500 Rh4CG216900 Rh4CG217200 Rh4CG217500 Rh4CG217700 Rh4CG217800 Rh4DG176700 Rh4DG202900 Rh4DG203000 Rh4DG203200 Rh4DG203300 Rh4DG203900
rosa_wichuraiana	Rw4G015160 Rw4G017430 Rw4G017440 Rw4G017450 Rw4G017460 Rw4G017480 Rw4G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	504, 513
AclWI	GGATC	3 cut(s)	141, 333, 346
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	431
AhlI	ACTAGT	2 cut(s)	314, 365
AjnI	CCWGG	3 cut(s)	92, 322, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	3 cut(s)	7, 199, 538
AluI	AGCT	3 cut(s)	7, 199, 538
Alw21I	GWGCWC	1 cut(s)	540
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	141, 333, 346
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	2 cut(s)	50, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
Asp700I	GAANNNNTTC	2 cut(s)	316, 435
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	410, 470
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	262, 540
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	62, 280
BccI	CCATC	2 cut(s)	26, 374
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	94, 324, 422
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 365
BfaI	CTAG	2 cut(s)	315, 366
BfmI	CTRYAG	2 cut(s)	168, 553
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	2 cut(s)	51, 294
BlpI	GCTNAGC	1 cut(s)	539
BlsI	GCNGC	2 cut(s)	52, 295
Bme1390I	CCNGG	4 cut(s)	55, 94, 324, 422
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	4 cut(s)	102, 245, 340, 361
BmrFI	CCNGG	4 cut(s)	55, 94, 324, 422
BmsI	GCATC	2 cut(s)	483, 550
BpiI	GAAGAC	1 cut(s)	488
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu1102I	GCTNAGC	1 cut(s)	539
BpuEI	CTTGAG	3 cut(s)	113, 282, 554
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	3 cut(s)	94, 324, 422
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	37, 392
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMII	CTCAG	1 cut(s)	553
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	423, 426
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	2 cut(s)	62, 280
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	262, 306, 540
Bsp143I	GATC	5 cut(s)	112, 133, 186, 338, 415
Bsp1720I	GCTNAGC	1 cut(s)	539
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	504, 513
BspCNI	CTCAG	1 cut(s)	552
BspHI	TCATGA	1 cut(s)	477
BspLI	GGNNCC	4 cut(s)	102, 245, 340, 361
BspPI	GGATC	3 cut(s)	141, 333, 346
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	5 cut(s)	112, 133, 186, 338, 415
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	3 cut(s)	94, 324, 422
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	539, 573
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	37, 392
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	5 cut(s)	115, 136, 189, 341, 418
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	5 cut(s)	112, 133, 186, 338, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	510, 569
BstNI	CCWGG	3 cut(s)	94, 324, 422
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	4 cut(s)	53, 92, 322, 420
BstSFI	CTRYAG	2 cut(s)	168, 553
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	2 cut(s)	62, 280
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	3 cut(s)	133, 186, 338
BstYI	RGATCY	3 cut(s)	133, 186, 338
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	37, 392
CciI	TCATGA	1 cut(s)	477
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	6 cut(s)	215, 307, 451, 455, 478, 568
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	2 cut(s)	539, 573
DpnI	GATC	5 cut(s)	114, 135, 188, 340, 417
DpnII	GATC	5 cut(s)	112, 133, 186, 338, 415
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 540
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	538
EcoRII	CCWGG	3 cut(s)	92, 322, 420
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	456
EcoT38I	GRGCYC	2 cut(s)	262, 540
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
FatI	CATG	6 cut(s)	214, 306, 450, 454, 477, 567
Fnu4HI	GCNGC	2 cut(s)	51, 294
FokI	GGATG	2 cut(s)	44, 379
FriOI	GRGCYC	2 cut(s)	262, 540
Fsp4HI	GCNGC	2 cut(s)	51, 294
FspBI	CTAG	2 cut(s)	315, 366
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	2 cut(s)	51, 294
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 179
HaeII	RGCGCY	1 cut(s)	163
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	410, 470
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	1 cut(s)	493
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 478
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	1 cut(s)	446
HpyCH4V	TGCA	4 cut(s)	285, 400, 454, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	510, 569
HpyF3I	CTNAG	2 cut(s)	539, 573
Hsp92II	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	5 cut(s)	112, 133, 186, 338, 415
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	2 cut(s)	62, 280
LweI	GCATC	2 cut(s)	483, 550
MaeI	CTAG	2 cut(s)	315, 366
MalI	GATC	5 cut(s)	114, 135, 188, 340, 417
MboI	GATC	5 cut(s)	112, 133, 186, 338, 415
MboII	GAAGA	2 cut(s)	289, 493
MflI	RGATCY	3 cut(s)	133, 186, 338
MhlI	GDGCHC	3 cut(s)	262, 306, 540
MluCI	AATT	1 cut(s)	352
Mph1103I	ATGCAT	1 cut(s)	456
MroXI	GAANNNNTTC	2 cut(s)	316, 435
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	4 cut(s)	55, 94, 324, 422
MvaI	CCWGG	3 cut(s)	94, 324, 422
MwoI	GCNNNNNNNGC	2 cut(s)	510, 569
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	112, 133, 186, 338, 415
NlaIII	CATG	6 cut(s)	218, 310, 454, 458, 481, 571
NlaIV	GGNNCC	4 cut(s)	102, 245, 340, 361
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PagI	TCATGA	1 cut(s)	477
PciI	ACATGT	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	316, 435
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	52, 295
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	540
Psp6I	CCWGG	3 cut(s)	92, 322, 420
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	92, 322, 420
PspN4I	GGNNCC	4 cut(s)	102, 245, 340, 361
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	3 cut(s)	133, 186, 338
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	51, 294
Sau3AI	GATC	5 cut(s)	112, 133, 186, 338, 415
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	4 cut(s)	55, 94, 324, 422
SduI	GDGCHC	3 cut(s)	262, 306, 540
SetI	ASST	6 cut(s)	9, 98, 201, 284, 502, 540
SfaNI	GCATC	2 cut(s)	483, 550
SfcI	CTRYAG	2 cut(s)	168, 553
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	360
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 533
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 533
SpeI	ACTAGT	2 cut(s)	314, 365
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	2 cut(s)	504, 513
SspMI	CTAG	2 cut(s)	315, 366
SstI	GAGCTC	1 cut(s)	540
StyD4I	CCNGG	4 cut(s)	53, 92, 322, 420
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	2 cut(s)	50, 293
TspDTI	ATGAA	2 cut(s)	290, 494
VpaK11BI	GGWCC	1 cut(s)	360
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 435
XspI	CTAG	2 cut(s)	315, 366
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.