Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001831

Physical Location & Seq

Genomic Coordinates Reverse (-)

6035523 .. 6037496

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGATTTTAGCCAAGGCTGCAAGTCCGTCATCATTAACAAGTTTGAGGACCGAGCATACAATAGGGTCCGGTACACTATAGTTTCATATGTTATGCATGATAGCACAGGAAGTGCCATGTATAGCCCCTTGCAGCAAACTGTCATGAAAATGGCTGAAGCGGCATTTGGAGCCATCAACCTTGAGCAGCACTCCGGGGCTCACCCTCGGTTGGGGGTTGTCGACGACATTGTCTTCCACCTGTTTGCTCGGGCATCATTGGATGAAGCTGCTTGGCTTGCTAAGGCAGTGGCAGTGGACATTGGCAATATATTCCAAGATTGTAAGAGAAACTCATTTTTAATTATGTACTGCAGAACCAGTTCGTATGCTGCAGCACACCTTACAGGCAAGGCACTAGACACAATCGGGCGTGAGCTAGGCTACTACAAATCCAATTTCTTGGGGAGCCAATGGGCAGGATGGCCCATGCTAGACGTTCTCCAAGAAAAGGCACGTCCGTGGGTTGCCTTGTACAGCATTCCCGTATTGTCCACGGATGTTGCGGCCACTCAACTGGTTGCACGGATGGTGAACGCCCGAGGGGGTGGACTTCCAACCGTGCAAACACTAGGCCTTGTGCATGGTGAGGACTCAACAGCGACAGCTTGCATGCTCTTAGAGCCCAAACCAGTTGGAGTGGACCGGGTCCAGAACCACATCGAGATGCTTGCGGCACAAGAAGGGTTGGATGCGGAGAAGGGGTACTTCACTGATCACTCACCAGTTATGATTATTGAAAAATACATGAAACTAATTTCATCTGCAGAACAATCATGCCAAGTGGATATTGTGAACTTGCATCTTCTATTTATATTTCTCAAAAAAAAAAAAAAAAAAATCAATGTCATTTTACATCAGCCTTGTAAGTATATGGTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005790 GO:0005793 GO:0005794 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006547 GO:0006548 GO:0006725 GO:0006807 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009987 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016054 GO:0016740 GO:0016741 GO:0016742 GO:0016829 GO:0016840 GO:0016841 GO:0019439 GO:0019752 GO:0030407 GO:0030409 GO:0030412 GO:0030868 GO:0031090 GO:0031984 GO:0034641 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0052803 GO:0052805 GO:0071704 GO:0071840 GO:0071944 GO:0097425 GO:0098588 GO:0098791 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FTCD_N

Protein Analysis

308

Amino Acids

34.14

Weight (kDa)

8.14

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FTCD_N	PF07837	8 - 106	1.4e-22	Formiminotransferase domain, N-terminal subdomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830 AT2G20830
fragaria_vesca	FvH4_6g44860 FvH4_6g44860 FvH4_6g44870 FvH4_6g44870 FvH4_6g44870
malus_domestica	MD09G1092400.v1.1 MD09G1092500.v1.1 MD17G1082500.v1.1
prunus_persica	Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232600_v2.0.a1 Prupe.3G232700_v2.0.a1 Prupe.3G232700_v2.0.a1
pyrus_communis	pycom09g01780 pycom09g01790 pycom17g08050 pycom17g08060
rosa_chinensis	RchiOBHm_Chr2g0162051 RchiOBHm_Chr2g0162061
rosa_laevigata	RLG00000021319
rosa_multiflora	Rmu_co8364399.1_g000001 Rmu_sc0005601.1_g000004 Rmu_sc0005601.1_g000005 Rmu_sc0026966.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088340 Rroxscaffold_2G00088350
rosa_rugosa	Rorug02G0494300
rosa_samantha	Rh2AG560400 Rh2AG560500 Rh2BG573700 Rh2BG573800 Rh2CG544000 Rh2CG544100 Rh2DG583700 Rh2DG583800
rosa_wichuraiana	Rw2G046410 Rw2G046420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	222
AciI	CCGC	4 cut(s)	161, 545, 713, 734
AcoI	YGGCCR	1 cut(s)	546
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	5 cut(s)	74, 350, 515, 746, 918
AfiI	CCNNNNNNNGG	3 cut(s)	211, 212, 490
AgsI	TTSAA	1 cut(s)	779
AjiI	CACGTC	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
AleI	CACNNNNGTG	1 cut(s)	499
AluBI	AGCT	3 cut(s)	269, 418, 647
AluI	AGCT	3 cut(s)	269, 418, 647
Ama87I	CYCGRG	2 cut(s)	249, 579
AoxI	GGCC	3 cut(s)	464, 546, 613
ApeKI	GCWGC	6 cut(s)	18, 133, 187, 269, 371, 374
Asp700I	GAANNNNTTC	1 cut(s)	361
AspS9I	GGNCC	5 cut(s)	49, 67, 465, 682, 688
AsuC2I	CCSGG	2 cut(s)	196, 686
AsuHPI	GGTGA	4 cut(s)	194, 583, 638, 753
AvaI	CYCGRG	2 cut(s)	249, 579
AvaII	GGWCC	4 cut(s)	49, 67, 682, 688
BanII	GRGCYC	2 cut(s)	202, 666
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	6 cut(s)	5, 145, 199, 256, 358, 386
BccI	CCATC	3 cut(s)	182, 456, 562
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	2 cut(s)	196, 686
BfaI	CTAG	4 cut(s)	398, 419, 473, 611
BfmI	CTRYAG	4 cut(s)	78, 352, 372, 804
BisI	GCNGC	9 cut(s)	19, 134, 162, 188, 270, 372, 375, 546, 714
BlsI	GCNGC	9 cut(s)	20, 135, 163, 189, 271, 373, 376, 547, 715
Bme1390I	CCNGG	2 cut(s)	196, 686
Bme18I	GGWCC	4 cut(s)	49, 67, 682, 688
BmeT110I	CYCGRG	2 cut(s)	249, 579
BmgBI	CACGTC	1 cut(s)	497
BmgT120I	GGNCC	5 cut(s)	49, 67, 465, 682, 688
BmiI	GGNNCC	4 cut(s)	68, 172, 449, 689
BmrFI	CCNGG	2 cut(s)	196, 686
BmsI	GCATC	4 cut(s)	263, 696, 721, 850
BpiI	GAAGAC	1 cut(s)	226
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu10I	CCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	196, 686
BsaJI	CCNNGG	6 cut(s)	13, 195, 206, 500, 534, 580
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	728, 758
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 212, 490
Bse1I	ACTGG	4 cut(s)	360, 561, 671, 764
BseDI	CCNNGG	6 cut(s)	13, 195, 206, 500, 534, 580
BseGI	GGATG	5 cut(s)	268, 467, 544, 573, 736
BseLI	CCNNNNNNNGG	3 cut(s)	211, 212, 490
BseNI	ACTGG	4 cut(s)	360, 561, 671, 764
BseXI	GCAGC	6 cut(s)	5, 145, 199, 256, 358, 386
BshFI	GGCC	3 cut(s)	466, 548, 615
BsiHKCI	CYCGRG	2 cut(s)	249, 579
BsiSI	CCGG	3 cut(s)	70, 195, 685
BslI	CCNNNNNNNGG	3 cut(s)	211, 212, 490
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	3 cut(s)	466, 548, 615
BsoBI	CYCGRG	2 cut(s)	249, 579
Bsp1286I	GDGCHC	2 cut(s)	202, 666
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	754
BspACI	CCGC	4 cut(s)	161, 545, 713, 734
BspANI	GGCC	3 cut(s)	466, 548, 615
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	4 cut(s)	68, 172, 449, 689
BspMAI	CTGCAG	3 cut(s)	356, 376, 808
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	4 cut(s)	360, 561, 671, 764
BssECI	CCNNGG	6 cut(s)	13, 195, 206, 500, 534, 580
BssMI	GATC	1 cut(s)	754
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	3 cut(s)	142, 601, 921
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	4 cut(s)	279, 649, 653, 711
BstDEI	CTNAG	2 cut(s)	282, 658
BstDSI	CCRYGG	2 cut(s)	500, 534
BstF5I	GGATG	5 cut(s)	268, 467, 544, 573, 736
BstKTI	GATC	1 cut(s)	757
BstMBI	GATC	1 cut(s)	754
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 161, 170, 278, 661
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	2 cut(s)	194, 684
BstSFI	CTRYAG	4 cut(s)	78, 352, 372, 804
BstV1I	GCAGC	6 cut(s)	5, 145, 199, 256, 358, 386
BstV2I	GAAGAC	1 cut(s)	226
BstXI	CCANNNNNNTGG	2 cut(s)	442, 556
BsuRI	GGCC	3 cut(s)	466, 548, 615
BtgI	CCRYGG	2 cut(s)	500, 534
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	5 cut(s)	268, 467, 544, 573, 736
BtsI	GCAGTG	2 cut(s)	294, 300
BtsIMutI	CAGTG	3 cut(s)	294, 300, 750
Cac8I	GCNNGC	4 cut(s)	279, 649, 653, 711
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	5 cut(s)	49, 67, 465, 682, 688
Csp6I	GTAC	5 cut(s)	73, 349, 514, 745, 917
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	8 cut(s)	98, 118, 145, 469, 623, 652, 787, 816
CviQI	GTAC	5 cut(s)	73, 349, 514, 745, 917
DdeI	CTNAG	2 cut(s)	282, 658
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	13
Eco147I	AGGCCT	1 cut(s)	615
Eco24I	GRGCYC	2 cut(s)	202, 666
Eco47I	GGWCC	4 cut(s)	49, 67, 682, 688
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	2 cut(s)	249, 579
EcoT14I	CCWWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	99
EcoT38I	GRGCYC	2 cut(s)	202, 666
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	8 cut(s)	101, 121, 148, 472, 626, 655, 790, 819
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FatI	CATG	8 cut(s)	97, 117, 144, 468, 622, 651, 786, 815
FauNDI	CATATG	1 cut(s)	88
FbaI	TGATCA	1 cut(s)	754
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	9 cut(s)	19, 134, 162, 188, 270, 372, 375, 546, 714
FokI	GGATG	5 cut(s)	275, 474, 551, 580, 743
FriOI	GRGCYC	2 cut(s)	202, 666
Fsp4HI	GCNGC	9 cut(s)	19, 134, 162, 188, 270, 372, 375, 546, 714
FspBI	CTAG	4 cut(s)	398, 419, 473, 611
GluI	GCNGC	9 cut(s)	19, 134, 162, 188, 270, 372, 375, 546, 714
HaeIII	GGCC	3 cut(s)	466, 548, 615
HapII	CCGG	3 cut(s)	70, 195, 685
Hin1II	CATG	8 cut(s)	101, 121, 148, 472, 626, 655, 790, 819
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	632
HpaII	CCGG	3 cut(s)	70, 195, 685
HphI	GGTGA	4 cut(s)	194, 583, 638, 753
Hpy166II	GTNNAC	8 cut(s)	75, 223, 298, 534, 574, 590, 682, 835
Hpy188III	TCNNGA	3 cut(s)	145, 691, 703
Hpy8I	GTNNAC	8 cut(s)	75, 223, 298, 534, 574, 590, 682, 835
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	716, 733
HpyCH4III	ACNGT	3 cut(s)	142, 601, 921
HpyCH4IV	ACGT	2 cut(s)	477, 496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 161, 170, 278, 661
HpyF3I	CTNAG	2 cut(s)	282, 658
HpySE526I	ACGT	2 cut(s)	477, 496
Hsp92II	CATG	8 cut(s)	101, 121, 148, 472, 626, 655, 790, 819
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	1 cut(s)	754
LmnI	GCTCC	2 cut(s)	170, 447
Lsp1109I	GCAGC	6 cut(s)	5, 145, 199, 256, 358, 386
LweI	GCATC	4 cut(s)	263, 696, 721, 850
MaeI	CTAG	4 cut(s)	398, 419, 473, 611
MaeII	ACGT	2 cut(s)	477, 496
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MboII	GAAGA	2 cut(s)	226, 836
MhlI	GDGCHC	2 cut(s)	202, 666
MluCI	AATT	3 cut(s)	342, 436, 795
MlyI	GAGTC	1 cut(s)	626
MmeI	TCCRAC	3 cut(s)	620, 655, 708
MnlI	CCTC	4 cut(s)	40, 216, 575, 622
Mph1103I	ATGCAT	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	361
MseI	TTAA	2 cut(s)	36, 341
MslI	CAYNNNNRTG	3 cut(s)	149, 499, 704
MspI	CCGG	3 cut(s)	70, 195, 685
MspR9I	CCNGG	2 cut(s)	196, 686
Mva1269I	GAATGC	1 cut(s)	519
MwoI	GCNNNNNNNGC	5 cut(s)	18, 161, 170, 278, 661
NciI	CCSGG	2 cut(s)	196, 686
NdeI	CATATG	1 cut(s)	88
NdeII	GATC	1 cut(s)	754
NlaIII	CATG	8 cut(s)	101, 121, 148, 472, 626, 655, 790, 819
NlaIV	GGNNCC	4 cut(s)	68, 172, 449, 689
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	1 cut(s)	655
OliI	CACNNNNGTG	1 cut(s)	499
PaeI	GCATGC	1 cut(s)	655
PagI	TCATGA	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	615
PctI	GAATGC	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	361
PflFI	GACNNNGTC	2 cut(s)	230, 686
PkrI	GCNGC	9 cut(s)	20, 135, 163, 189, 271, 373, 376, 547, 715
PleI	GAGTC	1 cut(s)	626
PpsI	GAGTC	1 cut(s)	626
PspN4I	GGNNCC	4 cut(s)	68, 172, 449, 689
PspPI	GGNCC	5 cut(s)	49, 67, 465, 682, 688
PstI	CTGCAG	3 cut(s)	356, 376, 808
PsyI	GACNNNGTC	2 cut(s)	230, 686
RsaI	GTAC	5 cut(s)	74, 350, 515, 746, 918
RsaNI	GTAC	5 cut(s)	73, 349, 514, 745, 917
RseI	CAYNNNNRTG	3 cut(s)	149, 499, 704
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	2 cut(s)	36, 341
SatI	GCNGC	9 cut(s)	19, 134, 162, 188, 270, 372, 375, 546, 714
Sau3AI	GATC	1 cut(s)	754
Sau96I	GGNCC	5 cut(s)	49, 67, 465, 682, 688
SchI	GAGTC	1 cut(s)	626
ScrFI	CCNGG	2 cut(s)	196, 686
SduI	GDGCHC	2 cut(s)	202, 666
SetI	ASST	8 cut(s)	183, 243, 271, 384, 420, 480, 499, 649
SfaNI	GCATC	4 cut(s)	263, 696, 721, 850
SfcI	CTRYAG	4 cut(s)	78, 352, 372, 804
SinI	GGWCC	4 cut(s)	49, 67, 682, 688
SmiMI	CAYNNNNRTG	3 cut(s)	149, 499, 704
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SphI	GCATGC	1 cut(s)	655
Sse9I	AATT	3 cut(s)	342, 436, 795
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	4 cut(s)	161, 545, 713, 734
SspMI	CTAG	4 cut(s)	398, 419, 473, 611
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	194, 684
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	3 cut(s)	142, 601, 921
TaiI	ACGT	2 cut(s)	480, 499
TaqI	TCGA	2 cut(s)	222, 702
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	342, 436, 795
TatI	WGTACW	2 cut(s)	348, 513
TauI	GCSGC	3 cut(s)	164, 548, 716
Tru1I	TTAA	2 cut(s)	36, 341
Tru9I	TTAA	2 cut(s)	36, 341
TscAI	CASTG	3 cut(s)	294, 300, 757
TseI	GCWGC	6 cut(s)	18, 133, 187, 269, 371, 374
TspDTI	ATGAA	5 cut(s)	75, 161, 279, 789, 803
TspGWI	ACGGA	4 cut(s)	16, 489, 551, 580
TspRI	CASTG	3 cut(s)	294, 300, 757
Tth111I	GACNNNGTC	2 cut(s)	230, 686
VpaK11BI	GGWCC	4 cut(s)	49, 67, 682, 688
XceI	RCATGY	1 cut(s)	655
XmiI	GTMKAC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	4 cut(s)	398, 419, 473, 611
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.